Rroxscaffold_5G00350430

Aldehyde dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000503
Physical Location & Seq
Forward (+)
24383673 .. 24389098
5426 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00350430.1

Sequence Viewer

Length: 240 bp
ATGGAGGCCGGCTTGCCAAGTGGGGTGTTAAATATTGTTCATGGCACCGATGAAACTTTTGATGCTATTTGTGATGATGATGACATTAAAGCCATCTCATTTGTTGGAACAAAAGCAGCAGGTGCTTACATTTATTCCCGAGCATCGGCTAAGGGGAAACGTATTCAGCGAGTAACGATGGCATTCATACAAATCAGATTTAGAAGCAGAATTATCAGCATTCAGCAACATGAAGATTGA

Protein Analysis

79

Amino Acids

8.72

Weight (kDa)

6.71

Isoelectric Point (pI)

35.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldedh PF00171 2 - 56 2.9e-12 Aldehyde dehydrogenase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000503)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14170
fragaria_vesca FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_2g11390 FvH4_2g11390 FvH4_2g11390 FvH4_2g11390 FvH4_2g11410 FvH4_2g11410
malus_domestica MD09G1234200.v1.1 MD15G1309700.v1.1
prunus_persica Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.8G073100_v2.0.a1 Prupe.8G073100_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1
pyrus_communis pycom09g15250 pycom15g27380
rosa_chinensis RchiOBHm_Chr2g0110691 RchiOBHm_Chr2g0137621 RchiOBHm_Chr6g0270041 RchiOBHm_Chr6g0270061 RchiOBHm_Chr6g0270141
rosa_laevigata RLG00000013815 RLG00000013819 RLG00000017831 RLG00000019609
rosa_multiflora Rmu_co8442727.1_g000001 Rmu_sc0000389.1_g000042 Rmu_sc0000918.1_g000033 Rmu_sc0003043.1_g000019 Rmu_sc0004376.1_g000013
rosa_roxburghii Rroxscaffold_2G00133030 Rroxscaffold_5G00350410 Rroxscaffold_5G00350420 Rroxscaffold_5G00350430 Rroxscaffold_6G00398360 Rroxscaffold_7G00198140 Rroxscaffold_7G00198180
rosa_rugosa Rorug02G0168700 Rorug02G0168800 Rorug02G0168800 Rorug02G0338300 Rorug06G0052100 Rorug06G0052200 Rorug06G0052800 Rorug06G0052900
rosa_samantha Rh2AG221000 Rh2AG387100 Rh2AG387200 Rh2AG547100 Rh2BG231100 Rh2BG504800 Rh2CG223400 Rh2CG374500 Rh2DG227200 Rh2DG410100 Rh2DG516200 Rh5CG251300 Rh6AG171200 Rh6AG171700 Rh6BG175700 Rh6BG176100 Rh6CG170500 Rh6CG171200 Rh6CG216400 Rh6DG162700 Rh6DG163000
rosa_wichuraiana Rw2G017050 Rw6G014700 Rw6G014740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 110
Acc36I ACCTGC 1 cut(s) 110
AccB1I GGYRCC 1 cut(s) 44
AfiI CCNNNNNNNGG 1 cut(s) 145
Ama87I CYCGRG 1 cut(s) 138
AoxI GGCC 1 cut(s) 6
ApeKI GCWGC 1 cut(s) 116
AvaI CYCGRG 1 cut(s) 138
BanI GGYRCC 1 cut(s) 44
BbvI GCAGC 1 cut(s) 128
BccI CCATC 2 cut(s) 101, 172
BfuAI ACCTGC 1 cut(s) 110
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
BmeT110I CYCGRG 1 cut(s) 138
BmiI GGNNCC 1 cut(s) 46
BmsI GCATC 2 cut(s) 52, 152
Bpu10I CCTNAGC 1 cut(s) 150
Bsc4I CCNNNNNNNGG 1 cut(s) 145
Bse118I RCCGGY 1 cut(s) 8
BseLI CCNNNNNNNGG 1 cut(s) 145
BseXI GCAGC 1 cut(s) 128
BshFI GGCC 1 cut(s) 8
BshNI GGYRCC 1 cut(s) 44
BsiHKCI CYCGRG 1 cut(s) 138
BsiSI CCGG 1 cut(s) 9
BslI CCNNNNNNNGG 1 cut(s) 145
BsmI GAATGC 2 cut(s) 182, 219
BsnI GGCC 1 cut(s) 8
BsoBI CYCGRG 1 cut(s) 138
BspANI GGCC 1 cut(s) 8
BspLI GGNNCC 1 cut(s) 46
BspMI ACCTGC 1 cut(s) 110
BspT107I GGYRCC 1 cut(s) 44
BsrFI RCCGGY 1 cut(s) 8
BssAI RCCGGY 1 cut(s) 8
BstAPI GCANNNNNTGC 1 cut(s) 122
BstC8I GCNNGC 2 cut(s) 10, 14
BstDEI CTNAG 1 cut(s) 150
BstMWI GCNNNNNNNGC 1 cut(s) 122
BstV1I GCAGC 1 cut(s) 128
BsuRI GGCC 1 cut(s) 8
BveI ACCTGC 1 cut(s) 110
Cac8I GCNNGC 2 cut(s) 10, 14
Cfr10I RCCGGY 1 cut(s) 8
CviAII CATG 2 cut(s) 41, 230
CviJI RGCY 4 cut(s) 8, 12, 92, 149
CviKI_1 RGCY 4 cut(s) 8, 12, 92, 149
DdeI CTNAG 1 cut(s) 150
Eco88I CYCGRG 1 cut(s) 138
FaeI CATG 2 cut(s) 44, 233
FaiI YATR 3 cut(s) 42, 188, 231
FatI CATG 2 cut(s) 40, 229
Fnu4HI GCNGC 1 cut(s) 117
Fsp4HI GCNGC 1 cut(s) 117
GluI GCNGC 1 cut(s) 117
HaeIII GGCC 1 cut(s) 8
HapII CCGG 1 cut(s) 9
Hin1II CATG 2 cut(s) 44, 233
HpaII CCGG 1 cut(s) 9
Hpy188I TCNGA 1 cut(s) 197
Hpy188III TCNNGA 1 cut(s) 138
HpyCH4IV ACGT 1 cut(s) 160
HpyF10VI GCNNNNNNNGC 1 cut(s) 122
HpyF3I CTNAG 1 cut(s) 150
HpySE526I ACGT 1 cut(s) 160
Hsp92II CATG 2 cut(s) 44, 233
KroI GCCGGC 1 cut(s) 8
KroNI GCCGGC 1 cut(s) 10
LpnPI CCDG 2 cut(s) 22, 105
Lsp1109I GCAGC 1 cut(s) 128
LweI GCATC 2 cut(s) 52, 152
MaeII ACGT 1 cut(s) 160
MaeIII GTNAC 1 cut(s) 172
MluCI AATT 1 cut(s) 210
MmeI TCCRAC 1 cut(s) 85
MroNI GCCGGC 1 cut(s) 8
MseI TTAA 2 cut(s) 29, 87
MspI CCGG 1 cut(s) 9
Mva1269I GAATGC 2 cut(s) 182, 219
MwoI GCNNNNNNNGC 1 cut(s) 122
NaeI GCCGGC 1 cut(s) 10
NgoMIV GCCGGC 1 cut(s) 8
NlaIII CATG 2 cut(s) 44, 233
NlaIV GGNNCC 1 cut(s) 46
PaqCI CACCTGC 1 cut(s) 110
PcsI WCGNNNNNNNCGW 1 cut(s) 166
PctI GAATGC 2 cut(s) 182, 219
PdiI GCCGGC 1 cut(s) 10
PkrI GCNGC 1 cut(s) 118
PspN4I GGNNCC 1 cut(s) 46
SaqAI TTAA 2 cut(s) 29, 87
SatI GCNGC 1 cut(s) 117
SetI ASST 2 cut(s) 124, 163
SfaNI GCATC 2 cut(s) 52, 152
SgeI CNNG 8 cut(s) 21, 25, 30, 53, 132, 150, 152, 182
Sse9I AATT 1 cut(s) 210
SspI AATATT 1 cut(s) 34
TaiI ACGT 1 cut(s) 163
TasI AATT 1 cut(s) 210
Tru1I TTAA 2 cut(s) 29, 87
Tru9I TTAA 2 cut(s) 29, 87
TseI GCWGC 1 cut(s) 116
TspDTI ATGAA 3 cut(s) 29, 66, 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.