Rh2AG547100

Cyclin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000503
Physical Location & Seq
Reverse (-)
77588668 .. 77621079
32412 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG547100.1

Sequence Viewer

Length: 999 bp
ATGTTATCCGCCGGTGAGTTCACCAATCACCTTAGCCGGCCGGAGCCGAGCATTCCAAGAGTGCTGACCATACTATCTTTTGTACTAGAGAAGTTGGTGGCTCGAAATAATGGTCTAGTAGACGACCTGACCCAACCACTGGATGCTCTGAGCTGTGGCTCGGCTGCAATCGGGAAGAGATTGAACCCGTTTCACGGCGTGAGGGCTCCGAGTATAAGCATACCTAAGTACTTGGAGAGGCTGTACAAGTACACAGATTGTAGCCCTTCATGTTTTGTGGTAGCATATGTGTATATAGACAGACTGGTGCATAAACACCCTGACTCGCTTGTGTTGTCCTTGAATGTACATAGGTTGCTGGTTACAAGCGTCATGGTTGCTTCTAAGATGCTAGATGATGTGCATTATAACAATGCATTTTATGCCAAGGTTGGGGGAGTAAGCAATGCTGAACTGAACAGACTAGAAGTGGAGTTTCTTTTCCTGCTGGATTTTGGAGTCACATCAAATATGGGGGCTAAGAAACATGTAATTGTGATGCCTGATGCAAGTCCTGATGCCACTTTGAATGGTTTAGTTGCCGCTGGCTTTGGTGCTGCAGGACAAAGGTGCATGGCACTCAGCACAGTTGTTTTTGTTGGAGGTTCAAAGTCATGTGCTGGAACAGAACCTGATGCTGACATTGGCCCTGTAATTAGCGAGCAAGCAAAGGAACGGATATGCAAATTAATCCAATCTGGTTTTGAAAGTGGTGCTAGGCTATTGCTTGATGGGAGAAATATAGTGGTCCCAGGATATGAGCATGGAAATTTTATTGGTCCGACCATCTTATCAAATGTCACGGCTGACATGGAGTGCTACAAGGAAGAAATTTTTGGTCCAGTTCTTCCTGCTTTAATTTTCAGGCGTGTTATACATGTTGAAGGTTTTCCTTCTAGCGTAGAAAACAACCCCGGCCCTCTCTCTTCTGTTTCAAATACTTGGCAAGAGAGGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin

Protein Analysis

332

Amino Acids

35.97

Weight (kDa)

6.0

Isoelectric Point (pI)

37.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin PF08613 22 - 166 1.1e-39 Cyclin
Cyclin_N PF00134 75 - 166 3e-09 Cyclin, N-terminal domain
Aldedh PF00171 167 - 302 8.1e-29 Aldehyde dehydrogenase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000503)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14170
fragaria_vesca FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_2g11390 FvH4_2g11390 FvH4_2g11390 FvH4_2g11390 FvH4_2g11410 FvH4_2g11410
malus_domestica MD09G1234200.v1.1 MD15G1309700.v1.1
prunus_persica Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.8G073100_v2.0.a1 Prupe.8G073100_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1
pyrus_communis pycom09g15250 pycom15g27380
rosa_chinensis RchiOBHm_Chr2g0110691 RchiOBHm_Chr2g0137621 RchiOBHm_Chr6g0270041 RchiOBHm_Chr6g0270061 RchiOBHm_Chr6g0270141
rosa_laevigata RLG00000013815 RLG00000013819 RLG00000017831 RLG00000019609
rosa_multiflora Rmu_co8442727.1_g000001 Rmu_sc0000389.1_g000042 Rmu_sc0000918.1_g000033 Rmu_sc0003043.1_g000019 Rmu_sc0004376.1_g000013
rosa_roxburghii Rroxscaffold_2G00133030 Rroxscaffold_5G00350410 Rroxscaffold_5G00350420 Rroxscaffold_5G00350430 Rroxscaffold_6G00398360 Rroxscaffold_7G00198140 Rroxscaffold_7G00198180
rosa_rugosa Rorug02G0168700 Rorug02G0168800 Rorug02G0168800 Rorug02G0338300 Rorug06G0052100 Rorug06G0052200 Rorug06G0052800 Rorug06G0052900
rosa_samantha Rh2AG221000 Rh2AG387100 Rh2AG387200 Rh2AG547100 Rh2BG231100 Rh2BG504800 Rh2CG223400 Rh2CG374500 Rh2DG227200 Rh2DG410100 Rh2DG516200 Rh5CG251300 Rh6AG171200 Rh6AG171700 Rh6BG175700 Rh6BG176100 Rh6CG170500 Rh6CG171200 Rh6CG216400 Rh6DG162700 Rh6DG163000
rosa_wichuraiana Rw2G017050 Rw6G014700 Rw6G014740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 408
AccB7I CCANNNNNTGG 1 cut(s) 139
AccI GTMKAC 1 cut(s) 120
AciI CCGC 2 cut(s) 9, 582
AcoI YGGCCR 1 cut(s) 38
AcsI RAATTY 2 cut(s) 808, 870
AdeI CACNNNGTG 1 cut(s) 199
AfaI GTAC 5 cut(s) 84, 230, 245, 251, 348
AfiI CCNNNNNNNGG 3 cut(s) 139, 194, 432
AflIII ACRYGT 2 cut(s) 526, 916
AgsI TTSAA 7 cut(s) 184, 343, 568, 648, 746, 923, 975
AjnI CCWGG 1 cut(s) 790
AjuI GAANNNNNNNTTGG 2 cut(s) 858, 890
AluBI AGCT 1 cut(s) 153
AluI AGCT 1 cut(s) 153
AlwNI CAGNNNCTG 1 cut(s) 671
AoxI GGCC 3 cut(s) 38, 685, 955
ApeKI GCWGC 2 cut(s) 164, 596
ApoI RAATTY 2 cut(s) 808, 870
ArsI GACNNNNNNTTYG 2 cut(s) 97, 129
AseI ATTAAT 1 cut(s) 728
Asp700I GAANNNNTTC 1 cut(s) 927
AspS9I GGNCC 5 cut(s) 686, 787, 818, 878, 956
AsuC2I CCSGG 1 cut(s) 954
AsuHPI GGTGA 3 cut(s) 13, 20, 26
AvaII GGWCC 3 cut(s) 787, 818, 878
BanII GRGCYC 1 cut(s) 208
BbvI GCAGC 2 cut(s) 151, 583
BccI CCATC 2 cut(s) 764, 833
BceAI ACGGC 2 cut(s) 211, 858
BciT130I CCWGG 1 cut(s) 792
BcnI CCSGG 1 cut(s) 954
BfaI CTAG 7 cut(s) 86, 116, 392, 464, 756, 936, 997
BfmI CTRYAG 1 cut(s) 597
BisI GCNGC 3 cut(s) 165, 582, 597
BlsI GCNGC 3 cut(s) 166, 583, 598
BmcAI AGTACT 1 cut(s) 230
Bme1390I CCNGG 2 cut(s) 792, 954
Bme18I GGWCC 3 cut(s) 787, 818, 878
BmgT120I GGNCC 5 cut(s) 686, 787, 818, 878, 956
BmiI GGNNCC 3 cut(s) 45, 207, 789
BmrFI CCNGG 2 cut(s) 792, 954
BmsI GCATC 6 cut(s) 133, 378, 528, 535, 547, 664
Bpu10I CCTNAGC 1 cut(s) 32
BpuMI CCSGG 1 cut(s) 954
BsaJI CCNNGG 3 cut(s) 426, 790, 952
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
Bsc4I CCNNNNNNNGG 3 cut(s) 139, 194, 432
Bse118I RCCGGY 2 cut(s) 11, 36
Bse1I ACTGG 3 cut(s) 144, 309, 881
Bse3DI GCAATG 1 cut(s) 451
BseBI CCWGG 1 cut(s) 792
BseDI CCNNGG 3 cut(s) 426, 790, 952
BseGI GGATG 1 cut(s) 148
BseLI CCNNNNNNNGG 3 cut(s) 139, 194, 432
BseMI GCAATG 1 cut(s) 451
BseMII CTCAG 2 cut(s) 140, 634
BseNI ACTGG 3 cut(s) 144, 309, 881
BseX3I CGGCCG 1 cut(s) 38
BseXI GCAGC 2 cut(s) 151, 583
Bsh1285I CGRYCG 1 cut(s) 41
BshFI GGCC 3 cut(s) 40, 687, 957
BsiEI CGRYCG 1 cut(s) 41
BsiSI CCGG 4 cut(s) 12, 37, 41, 954
BslFI GGGAC 1 cut(s) 773
BslI CCNNNNNNNGG 3 cut(s) 139, 194, 432
BsmFI GGGAC 1 cut(s) 773
BsmI GAATGC 1 cut(s) 51
BsnI GGCC 3 cut(s) 40, 687, 957
Bsp1286I GDGCHC 1 cut(s) 208
Bsp1407I TGTACA 2 cut(s) 243, 346
BspACI CCGC 2 cut(s) 9, 582
BspANI GGCC 3 cut(s) 40, 687, 957
BspCNI CTCAG 2 cut(s) 141, 633
BspLI GGNNCC 3 cut(s) 45, 207, 789
BspMAI CTGCAG 1 cut(s) 601
BsrDI GCAATG 1 cut(s) 451
BsrFI RCCGGY 2 cut(s) 11, 36
BsrGI TGTACA 2 cut(s) 243, 346
BsrI ACTGG 3 cut(s) 144, 309, 881
BssAI RCCGGY 2 cut(s) 11, 36
BssECI CCNNGG 3 cut(s) 426, 790, 952
BssT1I CCWWGG 1 cut(s) 426
Bst2UI CCWGG 1 cut(s) 792
Bst4CI ACNGT 1 cut(s) 628
Bst6I CTCTTC 2 cut(s) 170, 970
BstAPI GCANNNNNTGC 1 cut(s) 422
BstAUI TGTACA 2 cut(s) 243, 346
BstC8I GCNNGC 4 cut(s) 38, 586, 701, 705
BstDEI CTNAG 6 cut(s) 32, 149, 225, 384, 519, 620
BstF5I GGATG 1 cut(s) 148
BstMCI CGRYCG 1 cut(s) 41
BstMWI GCNNNNNNNGC 1 cut(s) 422
BstNI CCWGG 1 cut(s) 792
BstNSI RCATGY 2 cut(s) 530, 920
BstSCI CCNGG 2 cut(s) 790, 952
BstSFI CTRYAG 1 cut(s) 597
BstV1I GCAGC 2 cut(s) 151, 583
BstZI CGGCCG 1 cut(s) 38
BsuRI GGCC 3 cut(s) 40, 687, 957
BtsCI GGATG 1 cut(s) 148
BtsIMutI CAGTG 1 cut(s) 137
Cac8I GCNNGC 4 cut(s) 38, 586, 701, 705
CaiI CAGNNNCTG 1 cut(s) 671
Cfr10I RCCGGY 2 cut(s) 11, 36
Cfr13I GGNCC 5 cut(s) 686, 787, 818, 878, 956
CseI GACGC 1 cut(s) 358
Csp6I GTAC 5 cut(s) 83, 229, 244, 250, 347
CviAII CATG 8 cut(s) 270, 373, 527, 613, 654, 803, 850, 917
CviQI GTAC 5 cut(s) 83, 229, 244, 250, 347
DdeI CTNAG 6 cut(s) 32, 149, 225, 384, 519, 620
DraIII CACNNNGTG 1 cut(s) 199
EaeI YGGCCR 1 cut(s) 38
EagI CGGCCG 1 cut(s) 38
Eam1104I CTCTTC 2 cut(s) 170, 970
EarI CTCTTC 2 cut(s) 170, 970
EclXI CGGCCG 1 cut(s) 38
Eco130I CCWWGG 1 cut(s) 426
Eco24I GRGCYC 1 cut(s) 208
Eco47I GGWCC 3 cut(s) 787, 818, 878
Eco52I CGGCCG 1 cut(s) 38
EcoRII CCWGG 1 cut(s) 790
EcoT14I CCWWGG 1 cut(s) 426
EcoT22I ATGCAT 1 cut(s) 418
EcoT38I GRGCYC 1 cut(s) 208
ErhI CCWWGG 1 cut(s) 426
FaeI CATG 8 cut(s) 273, 376, 530, 616, 657, 806, 853, 920
FaqI GGGAC 1 cut(s) 773
FatI CATG 8 cut(s) 269, 372, 526, 612, 653, 802, 849, 916
FauNDI CATATG 1 cut(s) 286
FblI GTMKAC 1 cut(s) 120
Fnu4HI GCNGC 3 cut(s) 165, 582, 597
FokI GGATG 1 cut(s) 155
FriOI GRGCYC 1 cut(s) 208
Fsp4HI GCNGC 3 cut(s) 165, 582, 597
FspBI CTAG 7 cut(s) 86, 116, 392, 464, 756, 936, 997
GluI GCNGC 3 cut(s) 165, 582, 597
HaeIII GGCC 3 cut(s) 40, 687, 957
HapII CCGG 4 cut(s) 12, 37, 41, 954
HgaI GACGC 1 cut(s) 358
Hin1II CATG 8 cut(s) 273, 376, 530, 616, 657, 806, 853, 920
HinfI GANTC 2 cut(s) 323, 498
HpaII CCGG 4 cut(s) 12, 37, 41, 954
HphI GGTGA 3 cut(s) 13, 20, 26
Hpy166II GTNNAC 3 cut(s) 21, 121, 252
Hpy188I TCNGA 3 cut(s) 150, 210, 822
Hpy188III TCNNGA 2 cut(s) 172, 554
Hpy8I GTNNAC 3 cut(s) 21, 121, 252
HpyAV CCTTC 3 cut(s) 276, 917, 942
HpyCH4III ACNGT 1 cut(s) 628
HpyCH4V TGCA 8 cut(s) 167, 310, 403, 416, 548, 599, 612, 723
HpyF10VI GCNNNNNNNGC 1 cut(s) 422
HpyF3I CTNAG 6 cut(s) 32, 149, 225, 384, 519, 620
Hsp92II CATG 8 cut(s) 273, 376, 530, 616, 657, 806, 853, 920
KroI GCCGGC 1 cut(s) 36
KroNI GCCGGC 1 cut(s) 38
LmnI GCTCC 2 cut(s) 43, 211
Lsp1109I GCAGC 2 cut(s) 151, 583
LweI GCATC 6 cut(s) 133, 378, 528, 535, 547, 664
MaeI CTAG 7 cut(s) 86, 116, 392, 464, 756, 936, 997
MaeIII GTNAC 3 cut(s) 361, 499, 838
MboII GAAGA 4 cut(s) 187, 878, 878, 957
MhlI GDGCHC 1 cut(s) 208
MluCI AATT 6 cut(s) 531, 693, 725, 808, 870, 897
MlyI GAGTC 2 cut(s) 317, 507
MmeI TCCRAC 2 cut(s) 619, 845
MnlI CCTC 5 cut(s) 195, 231, 635, 969, 984
Mph1103I ATGCAT 1 cut(s) 418
MroNI GCCGGC 1 cut(s) 36
MroXI GAANNNNTTC 1 cut(s) 927
MseI TTAA 2 cut(s) 728, 896
MspA1I CMGCKG 1 cut(s) 584
MspI CCGG 4 cut(s) 12, 37, 41, 954
MspR9I CCNGG 2 cut(s) 792, 954
Mva1269I GAATGC 1 cut(s) 51
MvaI CCWGG 1 cut(s) 792
MwoI GCNNNNNNNGC 1 cut(s) 422
NaeI GCCGGC 1 cut(s) 38
NciI CCSGG 1 cut(s) 954
NdeI CATATG 1 cut(s) 286
NgoMIV GCCGGC 1 cut(s) 36
NlaIII CATG 8 cut(s) 273, 376, 530, 616, 657, 806, 853, 920
NlaIV GGNNCC 3 cut(s) 45, 207, 789
NmeAIII GCCGAG 2 cut(s) 72, 140
NmuCI GTSAC 2 cut(s) 499, 838
NsiI ATGCAT 1 cut(s) 418
NspI RCATGY 2 cut(s) 530, 920
PciI ACATGT 2 cut(s) 526, 916
PctI GAATGC 1 cut(s) 51
PdiI GCCGGC 1 cut(s) 38
PdmI GAANNNNTTC 1 cut(s) 927
PflMI CCANNNNNTGG 1 cut(s) 139
PkrI GCNGC 3 cut(s) 166, 583, 598
PleI GAGTC 2 cut(s) 317, 506
PpsI GAGTC 2 cut(s) 317, 506
PscI ACATGT 2 cut(s) 526, 916
PshBI ATTAAT 1 cut(s) 728
PsiI TTATAA 1 cut(s) 408
Psp6I CCWGG 1 cut(s) 790
PspGI CCWGG 1 cut(s) 790
PspN4I GGNNCC 3 cut(s) 45, 207, 789
PspPI GGNCC 5 cut(s) 686, 787, 818, 878, 956
PstI CTGCAG 1 cut(s) 601
PstNI CAGNNNCTG 1 cut(s) 671
RsaI GTAC 5 cut(s) 84, 230, 245, 251, 348
RsaNI GTAC 5 cut(s) 83, 229, 244, 250, 347
SaqAI TTAA 2 cut(s) 728, 896
SatI GCNGC 3 cut(s) 165, 582, 597
Sau96I GGNCC 5 cut(s) 686, 787, 818, 878, 956
ScaI AGTACT 1 cut(s) 230
SchI GAGTC 2 cut(s) 317, 507
ScrFI CCNGG 2 cut(s) 792, 954
SduI GDGCHC 1 cut(s) 208
SfaNI GCATC 6 cut(s) 133, 378, 528, 535, 547, 664
SfcI CTRYAG 1 cut(s) 597
SgrAI CRCCGGYG 1 cut(s) 11
SinI GGWCC 3 cut(s) 787, 818, 878
Sse9I AATT 6 cut(s) 531, 693, 725, 808, 870, 897
SsiI CCGC 2 cut(s) 9, 582
SspMI CTAG 7 cut(s) 86, 116, 392, 464, 756, 936, 997
StyD4I CCNGG 2 cut(s) 790, 952
StyI CCWWGG 1 cut(s) 426
TaaI ACNGT 1 cut(s) 628
TaqI TCGA 1 cut(s) 103
TasI AATT 6 cut(s) 531, 693, 725, 808, 870, 897
TatI WGTACW 5 cut(s) 82, 228, 243, 249, 346
TauI GCSGC 1 cut(s) 584
Tru1I TTAA 2 cut(s) 728, 896
Tru9I TTAA 2 cut(s) 728, 896
TscAI CASTG 1 cut(s) 144
TseFI GTSAC 2 cut(s) 499, 838
TseI GCWGC 2 cut(s) 164, 596
Tsp45I GTSAC 2 cut(s) 499, 838
TspDTI ATGAA 1 cut(s) 258
TspGWI ACGGA 1 cut(s) 730
TspRI CASTG 1 cut(s) 144
Van91I CCANNNNNTGG 1 cut(s) 139
VpaK11BI GGWCC 3 cut(s) 787, 818, 878
VspI ATTAAT 1 cut(s) 728
XapI RAATTY 2 cut(s) 808, 870
XceI RCATGY 2 cut(s) 530, 920
XmiI GTMKAC 1 cut(s) 120
XmnI GAANNNNTTC 1 cut(s) 927
XspI CTAG 7 cut(s) 86, 116, 392, 464, 756, 936, 997
ZrmI AGTACT 1 cut(s) 230
Zsp2I ATGCAT 1 cut(s) 418
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.