Rw2G017050

Aldehyde dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000503
Physical Location & Seq
Forward (+)
20786954 .. 20796806
9853 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G017050.1

Sequence Viewer

Length: 3162 bp
ATGGAAACTGAAAGTCAAATTGAGCTTACTATACGGAACAATATGCTTCCTCCACAAGCTGGAACATTTCAAGATCGTGAAGATCTCATCCAATATGTTCGTGATTTTGGTGCTAGTCAAGGATATGTGGTGACCATCAAGAAGTCAAGGAAAGACAGGAGAGTGATTTTAGGTTGTGATAGGGGAGGTGTTTATCGTAATAGGCGTAAAATCGATGAAAGCAAACGCAAAAGGAAGGCAAATTCACGCCTTATAAACTGTCCCTTTGAAGCCATTGGGAAAAGGGAAGATGATTTGTGGGTACTCACAATAAAGAATGGGGAGCATAATCATGAAGCATTAAAGGACATGTCAGAGCATCCTTATAGTCGTCGCTTTACTGAGGAAGAGGTCAGGCAAATCAAGCAAATGACCGAAGCTGGTATAAAACCACGTCAAGTTCTTAAGGCTCTCAAGCAAATGAATCCTGAACTGCAGTCAACACCAAGGCATTTGTATAACCTCAAAGCAAAGATCCGTCAAGGAACTCTATCAGAGAAAAGTTTCAAGACATGGAGACCTGACAGGTCCGCTTTGGTGAATACAAGTTCTGCTCCCAGTGGGGGGTCATTGATGCAAAGTAACCATCCGTTGAAGGTTCCTAATTTCATAGGAGGAAAATTCGTTGAATCACAAGGGTGTTCAATCATTGAAGTAGTAAATCCTGCAACACAAGAGATTGTTTCTCATGTTCCTTTAACTACCTATGAAGAGTTCAAAGCTGCAGTTAGTTCAGCCAAGCAAGCTTTTCCTTCATGGAAGAACACACCTATTACTACACGTCAAAGAATCCTGTTTAAGCTTCAGGAGCTCATCCGCAGAGATATTGATAAACTTGCCATGAATATCACCTTAGAGCAGGGTAAGACGTTGAAGGGTGCTGAGAGTGATGTGCTCCGTGGTATAGAGGTGGTCGAACATGCTTGTGGGATGGCAACTCTACAGATGGGTGAGTTTGTTCCTAATGCATCTTATGGTATTGATACATACAGCATTAGGGAACCACTTGGTGTTTGTGCCGGGATATGCCCCTTCAACTTTCCCTCAATGATTCCATTATGGATGTTCCCAGTTGCAGTTACATGTGGCAATACATTTGTTCTTAAGCCATGTGAAAAAAATCCAGGAGTTTCGATGATACTTGCAGCACTTGCTAAGGAGGCTGGTTTGCCCGATGGTGTGTTAAATATAGTCCATGGCACTCACGACATTGTTAATTATATCTGTGATGATGATGATATAAAGGCTGTTTCACTTGTTGGCTCGAGTACAGCTGGAATGCACATACATGCAAAGGCAGTTGCTAGGGGAAAGCGTGTTCAGTCCAATATAGGAGGAAAAAATCATGCCATCATCATGCCTGATGCTAGCATGGATGCAACCTTGAATGCTCTGGTCACGGCTGGTTTTGGTGCTGCAGGTCAGAGGTGTATGGCTCTTAATACAGCTGTTTTTGTTGGAAACTCAATAACATGGGAGCGTGAACTAGTGGAACGTGCCAAAGCCCTGAAAGTCAATGTGGGAACAGATCCCAGTGCAGACATTGGTCCAGTTATTACCAAAGAGGTGAAGGATTGCATATGCAGATTAGTCCAGAGCAGTGTCGAAAGCGGTGCTAGACTCGTTCTTGATGGGAGAAATGTTATGGTTCGAGGCTATGAGAATGGAAATTTTGTTGGTCCTACTATCTTATGTGATGTTACAACCAATATGGATTGTTTTAAGGAAGAAATTTTTGGACCGGTTCTTCTGTGCATGCAGGCTGCCAGCCTAGAAGAAGCGATCACAATTATAAACAGAAACAGGTGTGGGCATGGAGCATCCATCTTCACAACATCTGGCATTGCTGCAAGGAAGTTCCAGAATGAAGTTGAGGCTGGGCTGGTTGGGATCAATGTTCCTGTTCCGGTTCCGTTGCCACTGTCCTCGTTTAACGGATCTAAGGCATCTTTTGGCAGCGATCTGAATATCTCTGGTAAGGCAGGAGTGCAATTTTACACCCAGATCAAAGCGGTTGCACAACAGTGGAAGGATTTACCTAGCTTAGAATCATCATTAGCCTTGCGTCCATCATATGAGACAAATATGGCAAGCAGAGGTGTCTCTTCTTCTTTGCCTTCAACATCTGAGAGAGATTCACCTAGCCATAGAATATCAGGAGCCACAAACTCAGAATCTGAGAGTGATTCACCAAGCGAGTTGCCAAGTCGTGGAGCTCCGTTGTCCCTCCCTTCCACATCTGAGGCAGCTCTTCCAACCCAAGGAGCCTCATCTATGTCTCCAACAGCATATAGGGATTTTACTAGTCAGGGCCTGTCCCTTGTCCTGCCAGCAACATCCGAGAGAGATCTGTCCGGTGTGGATATGTCACTAGCCATGCCTCGAGCAACAGAAAGAGATATACCAAAACAAGGTTTGACATTGACAACTTCACAATCATCAGAGAGAATGTATATGCCTCAAACTTCTCATTGGATGGAAACCTCAAGACCAACATCTCAAAGGACTGAAAATATTTCACCAAGTTCTGAAAGGCATCTTGCCTCAACATCTCAGAGGAATGACAAGAATGGCAACACGTCACTGTCATCTCAAAGGACTGGTACTTCAATGGCATTGACTTCCGAGAGCGTCTATGCCCCTGCCTCTCATGACAATATGGCTCCAATATCACTCCGAAGTGATGGTATGACTGGAACATCTCACAGGACGGATCCCACTCTACGTCCAACCTCTGAGAGAGCATACATGCTGGGAGTAACTCACCGGAATGACAATATGGGTCAAACATTTCAAAGGCCCGACACCATGTTTTCAACATCTGAGAGGATGTACATGCCCGCAAAATCTCATCAGCATGACCATATGGGTTCAACATCTCGGAGAACTGATATTCCTATGCATTCAACTTCAGAGCGGATGTTCATGTCCACAGCATCTCAAAGGAATGAGGAGTTGGCTGTTGCTTCTCAACCTGCCTCCGAGAGATTATATTTGTCTCCATTAGTTCCGAGAAATGCTGGTACGCCTCAGAAGATGTTTCCCCAAAACTCTCTAATTTTGAGTGAGGAGTTTCCCTCCCAAGGAGCATCACTGACTTTACCCACATCTCAGAGGATATAG

Protein Analysis

1053

Amino Acids

115.21

Weight (kDa)

8.67

Isoelectric Point (pI)

53.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldedh PF00171 221 - 685 1.5e-134 Aldehyde dehydrogenase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000503)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14170
fragaria_vesca FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_2g11390 FvH4_2g11390 FvH4_2g11390 FvH4_2g11390 FvH4_2g11410 FvH4_2g11410
malus_domestica MD09G1234200.v1.1 MD15G1309700.v1.1
prunus_persica Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.8G073100_v2.0.a1 Prupe.8G073100_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1
pyrus_communis pycom09g15250 pycom15g27380
rosa_chinensis RchiOBHm_Chr2g0110691 RchiOBHm_Chr2g0137621 RchiOBHm_Chr6g0270041 RchiOBHm_Chr6g0270061 RchiOBHm_Chr6g0270141
rosa_laevigata RLG00000013815 RLG00000013819 RLG00000017831 RLG00000019609
rosa_multiflora Rmu_co8442727.1_g000001 Rmu_sc0000389.1_g000042 Rmu_sc0000918.1_g000033 Rmu_sc0003043.1_g000019 Rmu_sc0004376.1_g000013
rosa_roxburghii Rroxscaffold_2G00133030 Rroxscaffold_5G00350410 Rroxscaffold_5G00350420 Rroxscaffold_5G00350430 Rroxscaffold_6G00398360 Rroxscaffold_7G00198140 Rroxscaffold_7G00198180
rosa_rugosa Rorug02G0168700 Rorug02G0168800 Rorug02G0168800 Rorug02G0338300 Rorug06G0052100 Rorug06G0052200 Rorug06G0052800 Rorug06G0052900
rosa_samantha Rh2AG221000 Rh2AG387100 Rh2AG387200 Rh2AG547100 Rh2BG231100 Rh2BG504800 Rh2CG223400 Rh2CG374500 Rh2DG227200 Rh2DG410100 Rh2DG516200 Rh5CG251300 Rh6AG171200 Rh6AG171700 Rh6BG175700 Rh6BG176100 Rh6CG170500 Rh6CG171200 Rh6CG216400 Rh6DG162700 Rh6DG163000
rosa_wichuraiana Rw2G017050 Rw6G014700 Rw6G014740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 254, 1832
Acc36I ACCTGC 2 cut(s) 1448, 3022
AccB7I CCANNNNNTGG 2 cut(s) 59, 2249
AccBSI CCGCTC 1 cut(s) 2956
AciI CCGC 6 cut(s) 570, 856, 1650, 2051, 2880, 2956
AclWI GGATC 6 cut(s) 508, 1562, 1937, 1984, 2747, 2760
AcsI RAATTY 4 cut(s) 241, 659, 1708, 1770
AcuI CTGAAG 2 cut(s) 827, 2934
AdeI CACNNNGTG 1 cut(s) 1049
AfaI GTAC 5 cut(s) 303, 1309, 2644, 2873, 3064
AfiI CCNNNNNNNGG 7 cut(s) 59, 602, 603, 2249, 2300, 2450, 3122
AflII CTTAAG 2 cut(s) 443, 1142
AflIII ACRYGT 4 cut(s) 348, 818, 1121, 2616
AgeI ACCGGT 1 cut(s) 1780
AhlI ACTAGT 2 cut(s) 1525, 2342
AjiI CACGTC 3 cut(s) 434, 821, 2619
AjnI CCWGG 1 cut(s) 1162
AjuI GAANNNNNNNTTGG 4 cut(s) 1758, 1790, 2978, 3010
AleI CACNNNNGTG 2 cut(s) 676, 2062
AloI GAACNNNNNNTCC 4 cut(s) 1341, 1373, 2917, 2949
Alw21I GWGCWC 3 cut(s) 852, 936, 2257
Alw26I GTCTC 5 cut(s) 550, 2111, 2146, 2322, 3042
AlwI GGATC 6 cut(s) 508, 1562, 1937, 1984, 2747, 2760
AlwNI CAGNNNCTG 2 cut(s) 2216, 2353
Ama87I CYCGRG 2 cut(s) 1303, 2421
AoxI GGCC 2 cut(s) 2350, 2837
ApeKI GCWGC 7 cut(s) 761, 1184, 1454, 1802, 1886, 1995, 2285
ApoI RAATTY 4 cut(s) 241, 659, 1708, 1770
AsiGI ACCGGT 1 cut(s) 1780
Asp700I GAANNNNTTC 1 cut(s) 542
AspS9I GGNCC 6 cut(s) 567, 1586, 1718, 1778, 2350, 2838
AsuC2I CCSGG 1 cut(s) 1060
AsuHPI GGTGA 9 cut(s) 142, 589, 880, 1001, 1618, 2169, 2220, 2550, 2795
AsuNHI GCTAGC 1 cut(s) 1406
AvaI CYCGRG 2 cut(s) 1303, 2421
AvaII GGWCC 4 cut(s) 567, 1586, 1718, 1778
BamHI GGATCC 1 cut(s) 2752
BanII GRGCYC 2 cut(s) 852, 2257
Bbv12I GWGCWC 3 cut(s) 852, 936, 2257
BbvI GCAGC 7 cut(s) 748, 1196, 1441, 1789, 1873, 2007, 2297
BceAI ACGGC 1 cut(s) 1455
BcgI CGANNNNNNTGC 2 cut(s) 1634, 1668
BciT130I CCWGG 1 cut(s) 1164
BcnI CCSGG 1 cut(s) 1060
BcoDI GTCTC 5 cut(s) 550, 2111, 2146, 2322, 3042
BcuI ACTAGT 2 cut(s) 1525, 2342
BfmI CTRYAG 4 cut(s) 473, 762, 980, 1455
BfrI CTTAAG 2 cut(s) 443, 1142
BfuAI ACCTGC 2 cut(s) 1448, 3022
BglII AGATCT 2 cut(s) 82, 2386
BisI GCNGC 7 cut(s) 762, 1185, 1455, 1803, 1887, 1996, 2286
BlsI GCNGC 7 cut(s) 763, 1186, 1456, 1804, 1888, 1997, 2287
Bme1390I CCNGG 2 cut(s) 1060, 1164
Bme18I GGWCC 4 cut(s) 567, 1586, 1718, 1778
BmeT110I CYCGRG 2 cut(s) 1303, 2421
BmgBI CACGTC 3 cut(s) 434, 821, 2619
BmgT120I GGNCC 6 cut(s) 567, 1586, 1718, 1778, 2350, 2838
BmiI GGNNCC 7 cut(s) 639, 1041, 1950, 2200, 2305, 2703, 2754
BmrFI CCNGG 2 cut(s) 1060, 1164
BmrI ACTGGG 3 cut(s) 591, 1103, 1566
BmtI GCTAGC 1 cut(s) 1410
BmuI ACTGGG 3 cut(s) 591, 1103, 1566
BoxI GACNNNNGTC 1 cut(s) 1584
BplI GAGNNNNNCTC 2 cut(s) 3101, 3133
Bpu10I CCTNAGC 1 cut(s) 1194
BpuEI CTTGAG 2 cut(s) 437, 2509
BpuMI CCSGG 1 cut(s) 1060
Bsa29I ATCGAT 1 cut(s) 213
BsaI GGTCTC 1 cut(s) 550
BsaJI CCNNGG 5 cut(s) 485, 937, 1234, 2299, 3121
BsaWI WCCGGW 4 cut(s) 1780, 1945, 2393, 2805
Bsc4I CCNNNNNNNGG 7 cut(s) 59, 602, 603, 2249, 2300, 2450, 3122
Bse118I RCCGGY 1 cut(s) 1780
Bse1I ACTGG 6 cut(s) 597, 1109, 1572, 1589, 2644, 2737
Bse3DI GCAATG 1 cut(s) 1881
BseBI CCWGG 1 cut(s) 1164
BseCI ATCGAT 1 cut(s) 213
BseDI CCNNGG 5 cut(s) 485, 937, 1234, 2299, 3121
BseLI CCNNNNNNNGG 7 cut(s) 59, 602, 603, 2249, 2300, 2450, 3122
BseMI GCAATG 1 cut(s) 1881
BseNI ACTGG 6 cut(s) 597, 1109, 1572, 1589, 2644, 2737
BseRI GAGGAG 2 cut(s) 3005, 3122
BseXI GCAGC 7 cut(s) 748, 1196, 1441, 1789, 1873, 2007, 2297
BseYI CCCAGC 2 cut(s) 1916, 2791
BsgI GTGCAG 1 cut(s) 1596
BshFI GGCC 2 cut(s) 2352, 2839
BshTI ACCGGT 1 cut(s) 1780
BshVI ATCGAT 1 cut(s) 213
BsiHKAI GWGCWC 3 cut(s) 852, 936, 2257
BsiHKCI CYCGRG 2 cut(s) 1303, 2421
BsiSI CCGG 5 cut(s) 1059, 1781, 1946, 2394, 2806
BslFI GGGAC 3 cut(s) 246, 2248, 2341
BslI CCNNNNNNNGG 7 cut(s) 59, 602, 603, 2249, 2300, 2450, 3122
BsmAI GTCTC 5 cut(s) 550, 2111, 2146, 2322, 3042
BsmFI GGGAC 3 cut(s) 246, 2248, 2341
BsmI GAATGC 3 cut(s) 1323, 1432, 2941
BsnI GGCC 2 cut(s) 2352, 2839
Bso31I GGTCTC 1 cut(s) 550
BsoBI CYCGRG 2 cut(s) 1303, 2421
Bsp1286I GDGCHC 3 cut(s) 852, 936, 2257
Bsp1407I TGTACA 1 cut(s) 2871
Bsp19I CCATGG 1 cut(s) 1234
BspACI CCGC 6 cut(s) 570, 856, 1650, 2051, 2880, 2956
BspANI GGCC 2 cut(s) 2352, 2839
BspDI ATCGAT 1 cut(s) 213
BspHI TCATGA 2 cut(s) 331, 2689
BspLI GGNNCC 7 cut(s) 639, 1041, 1950, 2200, 2305, 2703, 2754
BspMAI CTGCAG 3 cut(s) 477, 766, 1459
BspMI ACCTGC 2 cut(s) 1448, 3022
BspOI GCTAGC 1 cut(s) 1410
BspPI GGATC 6 cut(s) 508, 1562, 1937, 1984, 2747, 2760
BspQI GCTCTTC 1 cut(s) 2295
BspTI CTTAAG 2 cut(s) 443, 1142
BspTNI GGTCTC 1 cut(s) 550
BsrBI CCGCTC 1 cut(s) 2956
BsrDI GCAATG 1 cut(s) 1881
BsrFI RCCGGY 1 cut(s) 1780
BsrGI TGTACA 1 cut(s) 2871
BsrI ACTGG 6 cut(s) 597, 1109, 1572, 1589, 2644, 2737
BssAI RCCGGY 1 cut(s) 1780
BssECI CCNNGG 5 cut(s) 485, 937, 1234, 2299, 3121
BssT1I CCWWGG 4 cut(s) 485, 1234, 2299, 3121
Bst2UI CCWGG 1 cut(s) 1164
Bst4CI ACNGT 4 cut(s) 260, 1962, 2064, 2625
Bst6I CTCTTC 4 cut(s) 381, 744, 2149, 2295
BstAFI CTTAAG 2 cut(s) 443, 1142
BstAPI GCANNNNNTGC 1 cut(s) 1190
BstAUI TGTACA 1 cut(s) 2871
BstC8I GCNNGC 8 cut(s) 783, 1408, 1796, 1800, 1807, 2131, 2370, 2880
BstDSI CCRYGG 2 cut(s) 937, 1234
BstEII GGTNACC 1 cut(s) 130
BstMAI GTCTC 5 cut(s) 550, 2111, 2146, 2322, 3042
BstMWI GCNNNNNNNGC 5 cut(s) 403, 782, 847, 1190, 1199
BstNI CCWGG 1 cut(s) 1164
BstNSI RCATGY 7 cut(s) 352, 962, 1125, 1331, 1798, 2791, 2878
BstPAI GACNNNNGTC 1 cut(s) 1584
BstPI GGTNACC 1 cut(s) 130
BstSCI CCNGG 2 cut(s) 1058, 1162
BstSFI CTRYAG 4 cut(s) 473, 762, 980, 1455
BstV1I GCAGC 7 cut(s) 748, 1196, 1441, 1789, 1873, 2007, 2297
BstX2I RGATCY 6 cut(s) 82, 513, 1567, 1976, 2386, 2752
BstYI RGATCY 6 cut(s) 82, 513, 1567, 1976, 2386, 2752
Bsu15I ATCGAT 1 cut(s) 213
BsuRI GGCC 2 cut(s) 2352, 2839
BsuTUI ATCGAT 1 cut(s) 213
BtgI CCRYGG 2 cut(s) 937, 1234
BtrI CACGTC 3 cut(s) 434, 821, 2619
BtsI GCAGTG 1 cut(s) 1645
BtsIMutI CAGTG 7 cut(s) 604, 1579, 1645, 1958, 2069, 2621, 3131
BveI ACCTGC 2 cut(s) 1448, 3022
Cac8I GCNNGC 8 cut(s) 783, 1408, 1796, 1800, 1807, 2131, 2370, 2880
CaiI CAGNNNCTG 2 cut(s) 2216, 2353
CciI TCATGA 2 cut(s) 331, 2689
Cfr10I RCCGGY 1 cut(s) 1780
Cfr13I GGNCC 6 cut(s) 567, 1586, 1718, 1778, 2350, 2838
ClaI ATCGAT 1 cut(s) 213
CseI GACGC 2 cut(s) 2093, 2659
Csp6I GTAC 5 cut(s) 302, 1308, 2643, 2872, 3063
CspAI ACCGGT 1 cut(s) 1780
CviQI GTAC 5 cut(s) 302, 1308, 2643, 2872, 3063
DraIII CACNNNGTG 1 cut(s) 1049
Eam1104I CTCTTC 4 cut(s) 381, 744, 2149, 2295
EarI CTCTTC 4 cut(s) 381, 744, 2149, 2295
Ecl136II GAGCTC 2 cut(s) 850, 2255
Eco130I CCWWGG 4 cut(s) 485, 1234, 2299, 3121
Eco24I GRGCYC 2 cut(s) 852, 2257
Eco31I GGTCTC 1 cut(s) 550
Eco47I GGWCC 4 cut(s) 567, 1586, 1718, 1778
Eco53kI GAGCTC 2 cut(s) 850, 2255
Eco57I CTGAAG 2 cut(s) 827, 2934
Eco88I CYCGRG 2 cut(s) 1303, 2421
Eco91I GGTNACC 1 cut(s) 130
EcoICRI GAGCTC 2 cut(s) 850, 2255
EcoO109I RGGNCCY 1 cut(s) 2350
EcoO65I GGTNACC 1 cut(s) 130
EcoRII CCWGG 1 cut(s) 1162
EcoT14I CCWWGG 4 cut(s) 485, 1234, 2299, 3121
EcoT22I ATGCAT 2 cut(s) 1009, 2943
EcoT38I GRGCYC 2 cut(s) 852, 2257
ErhI CCWWGG 4 cut(s) 485, 1234, 2299, 3121
FaqI GGGAC 3 cut(s) 246, 2248, 2341
FauI CCCGC 1 cut(s) 2887
FauNDI CATATG 3 cut(s) 1619, 2113, 2904
Fnu4HI GCNGC 7 cut(s) 762, 1185, 1455, 1803, 1887, 1996, 2286
FriOI GRGCYC 2 cut(s) 852, 2257
Fsp4HI GCNGC 7 cut(s) 762, 1185, 1455, 1803, 1887, 1996, 2286
GluI GCNGC 7 cut(s) 762, 1185, 1455, 1803, 1887, 1996, 2286
GsaI CCCAGC 2 cut(s) 1920, 2795
HaeIII GGCC 2 cut(s) 2352, 2839
HapII CCGG 5 cut(s) 1059, 1781, 1946, 2394, 2806
HgaI GACGC 2 cut(s) 2093, 2659
HincII GTYRAC 1 cut(s) 480
HindII GTYRAC 1 cut(s) 480
HindIII AAGCTT 2 cut(s) 783, 839
HinfI GANTC 9 cut(s) 463, 668, 828, 1090, 1659, 2087, 2174, 2213, 2225
HpaII CCGG 5 cut(s) 1059, 1781, 1946, 2394, 2806
HphI GGTGA 9 cut(s) 142, 589, 880, 1001, 1618, 2169, 2220, 2550, 2795
Hpy166II GTNNAC 3 cut(s) 480, 1523, 2970
Hpy8I GTNNAC 3 cut(s) 480, 1523, 2970
Hpy99I CGWCG 1 cut(s) 375
HpyAV CCTTC 9 cut(s) 229, 628, 801, 907, 1081, 1603, 2062, 2166, 2280
HpyCH4III ACNGT 4 cut(s) 260, 1962, 2064, 2625
HpyCH4IV ACGT 6 cut(s) 433, 820, 908, 1534, 2618, 2764
HpyF10VI GCNNNNNNNGC 5 cut(s) 403, 782, 847, 1190, 1199
HpySE526I ACGT 6 cut(s) 433, 820, 908, 1534, 2618, 2764
LguI GCTCTTC 1 cut(s) 2295
Lsp1109I GCAGC 7 cut(s) 748, 1196, 1441, 1789, 1873, 2007, 2297
MaeII ACGT 6 cut(s) 433, 820, 908, 1534, 2618, 2764
MaeIII GTNAC 8 cut(s) 130, 620, 1117, 1435, 1738, 2406, 2619, 2797
MbiI CCGCTC 1 cut(s) 2956
MflI RGATCY 6 cut(s) 82, 513, 1567, 1976, 2386, 2752
MhlI GDGCHC 3 cut(s) 852, 936, 2257
MlyI GAGTC 1 cut(s) 1653
MmeI TCCRAC 4 cut(s) 1477, 2318, 2345, 2792
Mph1103I ATGCAT 2 cut(s) 1009, 2943
MroXI GAANNNNTTC 1 cut(s) 542
MslI CAYNNNNRTG 8 cut(s) 330, 676, 963, 1326, 1394, 2062, 2808, 2895
MspA1I CMGCKG 2 cut(s) 1313, 1487
MspCI CTTAAG 2 cut(s) 443, 1142
MspI CCGG 5 cut(s) 1059, 1781, 1946, 2394, 2806
MspR9I CCNGG 2 cut(s) 1060, 1164
Mva1269I GAATGC 3 cut(s) 1323, 1432, 2941
MvaI CCWGG 1 cut(s) 1164
MwoI GCNNNNNNNGC 5 cut(s) 403, 782, 847, 1190, 1199
NciI CCSGG 1 cut(s) 1060
NcoI CCATGG 1 cut(s) 1234
NdeI CATATG 3 cut(s) 1619, 2113, 2904
NheI GCTAGC 1 cut(s) 1406
NlaIV GGNNCC 7 cut(s) 639, 1041, 1950, 2200, 2305, 2703, 2754
NmuCI GTSAC 4 cut(s) 130, 1435, 2406, 2619
NsiI ATGCAT 2 cut(s) 1009, 2943
NspI RCATGY 7 cut(s) 352, 962, 1125, 1331, 1798, 2791, 2878
OliI CACNNNNGTG 2 cut(s) 676, 2062
PaeI GCATGC 1 cut(s) 1798
PaeR7I CTCGAG 2 cut(s) 1303, 2421
PagI TCATGA 2 cut(s) 331, 2689
PciI ACATGT 2 cut(s) 348, 1121
PciSI GCTCTTC 1 cut(s) 2295
PcsI WCGNNNNNNNCGW 1 cut(s) 202
PctI GAATGC 3 cut(s) 1323, 1432, 2941
PdmI GAANNNNTTC 1 cut(s) 542
PfeI GAWTC 8 cut(s) 463, 668, 828, 1090, 2087, 2174, 2213, 2225
PflMI CCANNNNNTGG 2 cut(s) 59, 2249
PfoI TCCNGGA 1 cut(s) 1162
PinAI ACCGGT 1 cut(s) 1780
PkrI GCNGC 7 cut(s) 763, 1186, 1456, 1804, 1888, 1997, 2287
PleI GAGTC 1 cut(s) 1653
PpsI GAGTC 1 cut(s) 1653
PscI ACATGT 2 cut(s) 348, 1121
PshAI GACNNNNGTC 1 cut(s) 1584
PsiI TTATAA 2 cut(s) 254, 1832
Psp124BI GAGCTC 2 cut(s) 852, 2257
Psp6I CCWGG 1 cut(s) 1162
PspEI GGTNACC 1 cut(s) 130
PspFI CCCAGC 2 cut(s) 1916, 2791
PspGI CCWGG 1 cut(s) 1162
PspN4I GGNNCC 7 cut(s) 639, 1041, 1950, 2200, 2305, 2703, 2754
PspPI GGNCC 6 cut(s) 567, 1586, 1718, 1778, 2350, 2838
PspXI VCTCGAGB 2 cut(s) 1303, 2421
PstI CTGCAG 3 cut(s) 477, 766, 1459
PstNI CAGNNNCTG 2 cut(s) 2216, 2353
PsuI RGATCY 6 cut(s) 82, 513, 1567, 1976, 2386, 2752
PvuII CAGCTG 2 cut(s) 1313, 1487
RsaI GTAC 5 cut(s) 303, 1309, 2644, 2873, 3064
RsaNI GTAC 5 cut(s) 302, 1308, 2643, 2872, 3063
RseI CAYNNNNRTG 8 cut(s) 330, 676, 963, 1326, 1394, 2062, 2808, 2895
SacI GAGCTC 2 cut(s) 852, 2257
SapI GCTCTTC 1 cut(s) 2295
SatI GCNGC 7 cut(s) 762, 1185, 1455, 1803, 1887, 1996, 2286
Sau96I GGNCC 6 cut(s) 567, 1586, 1718, 1778, 2350, 2838
SchI GAGTC 1 cut(s) 1653
ScrFI CCNGG 2 cut(s) 1060, 1164
SduI GDGCHC 3 cut(s) 852, 936, 2257
SfcI CTRYAG 4 cut(s) 473, 762, 980, 1455
Sfr274I CTCGAG 2 cut(s) 1303, 2421
SinI GGWCC 4 cut(s) 567, 1586, 1718, 1778
SlaI CTCGAG 2 cut(s) 1303, 2421
SmiMI CAYNNNNRTG 8 cut(s) 330, 676, 963, 1326, 1394, 2062, 2808, 2895
SmlI CTYRAG 6 cut(s) 443, 452, 1142, 1303, 2421, 2524
SmoI CTYRAG 6 cut(s) 443, 452, 1142, 1303, 2421, 2524
SpeI ACTAGT 2 cut(s) 1525, 2342
SphI GCATGC 1 cut(s) 1798
SsiI CCGC 6 cut(s) 570, 856, 1650, 2051, 2880, 2956
SspI AATATT 1 cut(s) 2554
SstI GAGCTC 2 cut(s) 852, 2257
StyD4I CCNGG 2 cut(s) 1058, 1162
StyI CCWWGG 4 cut(s) 485, 1234, 2299, 3121
TaaI ACNGT 4 cut(s) 260, 1962, 2064, 2625
TaiI ACGT 6 cut(s) 436, 823, 911, 1537, 2621, 2767
TaqI TCGA 7 cut(s) 213, 954, 1172, 1304, 1644, 1690, 2422
TaqII GACCGA 1 cut(s) 428
TatI WGTACW 2 cut(s) 1307, 2871
TfiI GAWTC 8 cut(s) 463, 668, 828, 1090, 2087, 2174, 2213, 2225
TscAI CASTG 7 cut(s) 604, 1579, 1645, 1965, 2069, 2628, 3138
TseFI GTSAC 4 cut(s) 130, 1435, 2406, 2619
TseI GCWGC 7 cut(s) 761, 1184, 1454, 1802, 1886, 1995, 2285
Tsp45I GTSAC 4 cut(s) 130, 1435, 2406, 2619
TspDTI ATGAA 9 cut(s) 231, 348, 476, 637, 762, 783, 896, 1920, 2953
TspGWI ACGGA 8 cut(s) 49, 506, 618, 926, 1941, 1989, 2247, 2765
TspRI CASTG 7 cut(s) 604, 1579, 1645, 1965, 2069, 2628, 3138
Van91I CCANNNNNTGG 2 cut(s) 59, 2249
Vha464I CTTAAG 2 cut(s) 443, 1142
VpaK11BI GGWCC 4 cut(s) 567, 1586, 1718, 1778
XapI RAATTY 4 cut(s) 241, 659, 1708, 1770
XceI RCATGY 7 cut(s) 352, 962, 1125, 1331, 1798, 2791, 2878
XhoI CTCGAG 2 cut(s) 1303, 2421
XmnI GAANNNNTTC 1 cut(s) 542
Zsp2I ATGCAT 2 cut(s) 1009, 2943
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.