Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000503

Physical Location & Seq

Genomic Coordinates Forward (+)

55397553 .. 55401789

Gene Structure 4237 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ50835

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGGGGGCTAAGAACCATGTAATTGTGATGCCTGATGCAAGTCCTGATGCCACTTTGAATGGTTTAGTTGCCGCTGGTTTTGGTGCTGCAGGACAAAGGTGCATGGCACTCAGCACAGTTGTTTTTGTTGGAGGTTCCAAGTCATGGGAGAACAAACTAGTGGAATGTGGCAAATATCTAAGTCAGTGCTGGAACAGAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006979 GO:0008150 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00562 ko00640 ko01100 ko01200 map00280 map00410 map00562 map00640 map01100 map01200

Pfam Domains

Protein Families

Aldedh

Protein Analysis

67

Amino Acids

7.05

Weight (kDa)

8.59

Isoelectric Point (pI)

36.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldedh	PF00171	1 - 42	1.2e-08	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0000503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14170
fragaria_vesca	FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_2g11390 FvH4_2g11390 FvH4_2g11390 FvH4_2g11390 FvH4_2g11410 FvH4_2g11410
malus_domestica	MD09G1234200.v1.1 MD15G1309700.v1.1
prunus_persica	Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.8G073100_v2.0.a1 Prupe.8G073100_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1
pyrus_communis	pycom09g15250 pycom15g27380
rosa_chinensis	RchiOBHm_Chr2g0110691 RchiOBHm_Chr2g0137621 RchiOBHm_Chr6g0270041 RchiOBHm_Chr6g0270061 RchiOBHm_Chr6g0270141
rosa_laevigata	RLG00000013815 RLG00000013819 RLG00000017831 RLG00000019609
rosa_multiflora	Rmu_co8442727.1_g000001 Rmu_sc0000389.1_g000042 Rmu_sc0000918.1_g000033 Rmu_sc0003043.1_g000019 Rmu_sc0004376.1_g000013
rosa_roxburghii	Rroxscaffold_2G00133030 Rroxscaffold_5G00350410 Rroxscaffold_5G00350420 Rroxscaffold_5G00350430 Rroxscaffold_6G00398360 Rroxscaffold_7G00198140 Rroxscaffold_7G00198180
rosa_rugosa	Rorug02G0168700 Rorug02G0168800 Rorug02G0168800 Rorug02G0338300 Rorug06G0052100 Rorug06G0052200 Rorug06G0052800 Rorug06G0052900
rosa_samantha	Rh2AG221000 Rh2AG387100 Rh2AG387200 Rh2AG547100 Rh2BG231100 Rh2BG504800 Rh2CG223400 Rh2CG374500 Rh2DG227200 Rh2DG410100 Rh2DG516200 Rh5CG251300 Rh6AG171200 Rh6AG171700 Rh6BG175700 Rh6BG176100 Rh6CG170500 Rh6CG171200 Rh6CG216400 Rh6DG162700 Rh6DG163000
rosa_wichuraiana	Rw2G017050 Rw6G014700 Rw6G014740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	144
AciI	CCGC	1 cut(s)	72
AfiI	CCNNNNNNNGG	1 cut(s)	144
AgsI	TTSAA	1 cut(s)	58
AhlI	ACTAGT	1 cut(s)	157
AlwNI	CAGNNNCTG	1 cut(s)	201
ApeKI	GCWGC	1 cut(s)	86
BbvI	GCAGC	1 cut(s)	73
BcuI	ACTAGT	1 cut(s)	157
BfaI	CTAG	1 cut(s)	158
BfmI	CTRYAG	1 cut(s)	87
BisI	GCNGC	2 cut(s)	72, 87
BlsI	GCNGC	2 cut(s)	73, 88
BmiI	GGNNCC	1 cut(s)	136
BmsI	GCATC	3 cut(s)	18, 25, 37
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMII	CTCAG	1 cut(s)	124
BseXI	GCAGC	1 cut(s)	73
BslI	CCNNNNNNNGG	1 cut(s)	144
BspACI	CCGC	1 cut(s)	72
BspCNI	CTCAG	1 cut(s)	123
BspLI	GGNNCC	1 cut(s)	136
BspMAI	CTGCAG	1 cut(s)	91
Bst4CI	ACNGT	1 cut(s)	118
BstDEI	CTNAG	3 cut(s)	9, 110, 179
BstSFI	CTRYAG	1 cut(s)	87
BstV1I	GCAGC	1 cut(s)	73
BtsIMutI	CAGTG	1 cut(s)	191
CaiI	CAGNNNCTG	1 cut(s)	201
CviAII	CATG	3 cut(s)	17, 103, 144
CviJI	RGCY	1 cut(s)	8
CviKI_1	RGCY	1 cut(s)	8
DdeI	CTNAG	3 cut(s)	9, 110, 179
FaeI	CATG	3 cut(s)	20, 106, 147
FaiI	YATR	3 cut(s)	18, 104, 145
FatI	CATG	3 cut(s)	16, 102, 143
Fnu4HI	GCNGC	2 cut(s)	72, 87
Fsp4HI	GCNGC	2 cut(s)	72, 87
FspBI	CTAG	1 cut(s)	158
GluI	GCNGC	2 cut(s)	72, 87
Hin1II	CATG	3 cut(s)	20, 106, 147
Hpy188III	TCNNGA	1 cut(s)	44
HpyCH4III	ACNGT	1 cut(s)	118
HpyCH4V	TGCA	3 cut(s)	38, 89, 102
HpyF3I	CTNAG	3 cut(s)	9, 110, 179
Hsp92II	CATG	3 cut(s)	20, 106, 147
LpnPI	CCDG	5 cut(s)	45, 57, 60, 75, 175
Lsp1109I	GCAGC	1 cut(s)	73
LweI	GCATC	3 cut(s)	18, 25, 37
MaeI	CTAG	1 cut(s)	158
MluCI	AATT	1 cut(s)	21
MmeI	TCCRAC	1 cut(s)	109
MnlI	CCTC	1 cut(s)	125
MspA1I	CMGCKG	1 cut(s)	74
NlaIII	CATG	3 cut(s)	20, 106, 147
NlaIV	GGNNCC	1 cut(s)	136
PflMI	CCANNNNNTGG	1 cut(s)	144
PkrI	GCNGC	2 cut(s)	73, 88
PspN4I	GGNNCC	1 cut(s)	136
PstI	CTGCAG	1 cut(s)	91
PstNI	CAGNNNCTG	1 cut(s)	201
SatI	GCNGC	2 cut(s)	72, 87
SetI	ASST	3 cut(s)	101, 136, 203
SfaNI	GCATC	3 cut(s)	18, 25, 37
SfcI	CTRYAG	1 cut(s)	87
SpeI	ACTAGT	1 cut(s)	157
Sse9I	AATT	1 cut(s)	21
SsiI	CCGC	1 cut(s)	72
SspMI	CTAG	1 cut(s)	158
TaaI	ACNGT	1 cut(s)	118
TasI	AATT	1 cut(s)	21
TauI	GCSGC	1 cut(s)	74
TscAI	CASTG	1 cut(s)	191
TseI	GCWGC	1 cut(s)	86
TspRI	CASTG	1 cut(s)	191
Van91I	CCANNNNNTGG	1 cut(s)	144
XspI	CTAG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.