Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8442727.1

Orthogroup ID

OG0000503

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1369

Gene Structure 1369 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8442727.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 341 bp

atgatacttgcagcacttgctaaggaggctggtttgcccgatggtgtgttaaatatagtccatggcactcacgacattgttaattatatctgtgatgatgatgatataaaggctgtttcacttgttggctcgagtacagctggaatgcacatacatgcaaaggcagttgctaggggaaagcgtgttcagtccaatataggaggaaaaaatcatgccatcatcatgcctgatgctagcatggatgcaaccttgaatgctctggtcacggctggttttggtgctgcaggacagaggtgtatggctcttaatacagctgtttttgttggaaactcaataacatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006979 GO:0008150 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00562 ko00640 ko01100 ko01200 map00280 map00410 map00562 map00640 map01100 map01200

Pfam Domains

Protein Families

Aldedh

Protein Analysis

113

Amino Acids

11.55

Weight (kDa)

6.48

Isoelectric Point (pI)

38.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14170
fragaria_vesca	FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_2g11390 FvH4_2g11390 FvH4_2g11390 FvH4_2g11390 FvH4_2g11410 FvH4_2g11410
malus_domestica	MD09G1234200.v1.1 MD15G1309700.v1.1
prunus_persica	Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.8G073100_v2.0.a1 Prupe.8G073100_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1
pyrus_communis	pycom09g15250 pycom15g27380
rosa_chinensis	RchiOBHm_Chr2g0110691 RchiOBHm_Chr2g0137621 RchiOBHm_Chr6g0270041 RchiOBHm_Chr6g0270061 RchiOBHm_Chr6g0270141
rosa_laevigata	RLG00000013815 RLG00000013819 RLG00000017831 RLG00000019609
rosa_multiflora	Rmu_co8442727.1_g000001 Rmu_sc0000389.1_g000042 Rmu_sc0000918.1_g000033 Rmu_sc0003043.1_g000019 Rmu_sc0004376.1_g000013
rosa_roxburghii	Rroxscaffold_2G00133030 Rroxscaffold_5G00350410 Rroxscaffold_5G00350420 Rroxscaffold_5G00350430 Rroxscaffold_6G00398360 Rroxscaffold_7G00198140 Rroxscaffold_7G00198180
rosa_rugosa	Rorug02G0168700 Rorug02G0168800 Rorug02G0168800 Rorug02G0338300 Rorug06G0052100 Rorug06G0052200 Rorug06G0052800 Rorug06G0052900
rosa_samantha	Rh2AG221000 Rh2AG387100 Rh2AG387200 Rh2AG547100 Rh2BG231100 Rh2BG504800 Rh2CG223400 Rh2CG374500 Rh2DG227200 Rh2DG410100 Rh2DG516200 Rh5CG251300 Rh6AG171200 Rh6AG171700 Rh6BG175700 Rh6BG176100 Rh6CG170500 Rh6CG171200 Rh6CG216400 Rh6DG162700 Rh6DG163000
rosa_wichuraiana	Rw2G017050 Rw6G014700 Rw6G014740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	136
AgsI	TTSAA	1 cut(s)	253
AloI	GAACNNNNNNTCC	2 cut(s)	168, 200
AluBI	AGCT	2 cut(s)	140, 314
AluI	AGCT	2 cut(s)	140, 314
Ama87I	CYCGRG	1 cut(s)	130
ApeKI	GCWGC	2 cut(s)	11, 281
AsuNHI	GCTAGC	1 cut(s)	233
AvaI	CYCGRG	1 cut(s)	130
BbvI	GCAGC	2 cut(s)	23, 268
BccI	CCATC	2 cut(s)	35, 224
BceAI	ACGGC	1 cut(s)	282
BfaI	CTAG	2 cut(s)	171, 234
BfmI	CTRYAG	1 cut(s)	282
BisI	GCNGC	2 cut(s)	12, 282
BlsI	GCNGC	2 cut(s)	13, 283
BmeT110I	CYCGRG	1 cut(s)	130
BmsI	GCATC	2 cut(s)	220, 232
BmtI	GCTAGC	1 cut(s)	237
Bpu10I	CCTNAGC	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	61
BseDI	CCNNGG	1 cut(s)	61
BseGI	GGATG	1 cut(s)	247
BseXI	GCAGC	2 cut(s)	23, 268
BsiHKCI	CYCGRG	1 cut(s)	130
BsmI	GAATGC	2 cut(s)	150, 259
BsoBI	CYCGRG	1 cut(s)	130
Bsp19I	CCATGG	1 cut(s)	61
BspMAI	CTGCAG	1 cut(s)	286
BspOI	GCTAGC	1 cut(s)	237
BssECI	CCNNGG	1 cut(s)	61
BssT1I	CCWWGG	1 cut(s)	61
BstAPI	GCANNNNNTGC	1 cut(s)	17
BstC8I	GCNNGC	1 cut(s)	235
BstDEI	CTNAG	1 cut(s)	21
BstDSI	CCRYGG	1 cut(s)	61
BstF5I	GGATG	1 cut(s)	247
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 26
BstNSI	RCATGY	1 cut(s)	158
BstSFI	CTRYAG	1 cut(s)	282
BstV1I	GCAGC	2 cut(s)	23, 268
BtgI	CCRYGG	1 cut(s)	61
BtsCI	GGATG	1 cut(s)	247
Cac8I	GCNNGC	1 cut(s)	235
Csp6I	GTAC	1 cut(s)	135
CviAII	CATG	6 cut(s)	62, 155, 212, 223, 238, 339
CviJI	RGCY	7 cut(s)	29, 113, 129, 140, 269, 302, 314
CviKI_1	RGCY	7 cut(s)	29, 113, 129, 140, 269, 302, 314
CviQI	GTAC	1 cut(s)	135
DdeI	CTNAG	1 cut(s)	21
Eco130I	CCWWGG	1 cut(s)	61
Eco88I	CYCGRG	1 cut(s)	130
EcoT14I	CCWWGG	1 cut(s)	61
ErhI	CCWWGG	1 cut(s)	61
FaeI	CATG	5 cut(s)	65, 158, 215, 226, 241
FatI	CATG	5 cut(s)	61, 154, 211, 222, 237
Fnu4HI	GCNGC	2 cut(s)	12, 282
FokI	GGATG	1 cut(s)	254
Fsp4HI	GCNGC	2 cut(s)	12, 282
FspBI	CTAG	2 cut(s)	171, 234
GluI	GCNGC	2 cut(s)	12, 282
Hin1II	CATG	5 cut(s)	65, 158, 215, 226, 241
Hpy188III	TCNNGA	1 cut(s)	71
HpyCH4V	TGCA	5 cut(s)	11, 148, 158, 245, 284
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 26
HpyF3I	CTNAG	1 cut(s)	21
Hsp92II	CATG	5 cut(s)	65, 158, 215, 226, 241
LpnPI	CCDG	6 cut(s)	15, 126, 240, 245, 255, 270
Lsp1109I	GCAGC	2 cut(s)	23, 268
LweI	GCATC	2 cut(s)	220, 232
MaeI	CTAG	2 cut(s)	171, 234
MaeIII	GTNAC	1 cut(s)	262
MluCI	AATT	1 cut(s)	82
MmeI	TCCRAC	1 cut(s)	304
MnlI	CCTC	3 cut(s)	19, 194, 285
MseI	TTAA	3 cut(s)	50, 81, 306
MslI	CAYNNNNRTG	2 cut(s)	153, 221
MspA1I	CMGCKG	2 cut(s)	140, 314
Mva1269I	GAATGC	2 cut(s)	150, 259
MwoI	GCNNNNNNNGC	2 cut(s)	17, 26
NcoI	CCATGG	1 cut(s)	61
NheI	GCTAGC	1 cut(s)	233
NlaIII	CATG	5 cut(s)	65, 158, 215, 226, 241
NmuCI	GTSAC	1 cut(s)	262
NspI	RCATGY	1 cut(s)	158
PaeR7I	CTCGAG	1 cut(s)	130
PctI	GAATGC	2 cut(s)	150, 259
PkrI	GCNGC	2 cut(s)	13, 283
PspXI	VCTCGAGB	1 cut(s)	130
PstI	CTGCAG	1 cut(s)	286
PvuII	CAGCTG	2 cut(s)	140, 314
RsaI	GTAC	1 cut(s)	136
RsaNI	GTAC	1 cut(s)	135
RseI	CAYNNNNRTG	2 cut(s)	153, 221
SaqAI	TTAA	3 cut(s)	50, 81, 306
SatI	GCNGC	2 cut(s)	12, 282
SetI	ASST	4 cut(s)	142, 251, 296, 316
SfaNI	GCATC	2 cut(s)	220, 232
SfcI	CTRYAG	1 cut(s)	282
Sfr274I	CTCGAG	1 cut(s)	130
SlaI	CTCGAG	1 cut(s)	130
SmiMI	CAYNNNNRTG	2 cut(s)	153, 221
SmlI	CTYRAG	1 cut(s)	130
SmoI	CTYRAG	1 cut(s)	130
Sse9I	AATT	1 cut(s)	82
SspMI	CTAG	2 cut(s)	171, 234
StyI	CCWWGG	1 cut(s)	61
TaqI	TCGA	1 cut(s)	131
TasI	AATT	1 cut(s)	82
TatI	WGTACW	1 cut(s)	134
Tru1I	TTAA	3 cut(s)	50, 81, 306
Tru9I	TTAA	3 cut(s)	50, 81, 306
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	2 cut(s)	11, 281
Tsp45I	GTSAC	1 cut(s)	262
XceI	RCATGY	1 cut(s)	158
XhoI	CTCGAG	1 cut(s)	130
XspI	CTAG	2 cut(s)	171, 234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.