Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0000503

Physical Location & Seq

Genomic Coordinates Reverse (-)

50823341 .. 50830527

Gene Structure 7187 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG374500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGCCACCGCAGCATTGCTCCGTTCGCTATGCTGTCGTGATGTTGCAACCGCCTCCCTCTCTGCCTACCGCTCTTCGGCGAGACACGCGAATCCCTTGTACTATCTTCTCTCAACCCAGGCTGGCATGCACATATTTTCAAGAGCATCAGCTAAAGGGAAACACGTTCAGTCAAATATGGGGGCTAAGAACCATGCAATTGTGATGCCTGATGCAAGTCCTGATGCCACTTTGAATGGTTTAGTTGCCGCTGGTTTTGGTGCTGCAGGACAAAGTGCTGGAACAGAACCTGATGCTGACATTGGCCCTGTAATTAGCGAGCAAGCAAAGGAACGGATATGCAAATTAATCCAATCTGGTGTTGAAAGTGGTGCTAGGCTATTGCTTGATGGGAGAAATATAGTGGTCCCAGGATATGAGCATGGAAATTTAATTGGTCCGACCATCTTATCAAATGTCACGGCTGACATGGAGTGCTACAAGTTTAGTAGTGATGATGAGCAGGGTGGCGGGTACTTTGGAGGTGAAGCTTCTTGGGATCAGTCTGGCTCAGACATCCCCATTATGAACAAGATCTTAGAGGAGCACAGAGACAAGATTCCAAGTGACTTGGCTAGAGAAGTTGAGGCTGCAATTACAGATTTGCAGAAGGCAACGGAAGGGGGTAATGCTGATGAGATTAATGCGAAGCTTGACGATGCCAGCAAAGCTGTCTCAAAGATTGGGGAGCACATGTACCGGGGCCCTGATTCTGATGATGACTCTGTTGGTGACCATGATCCCGCTGGTTGTCTCAATGATGGGGAATACCATGAAGGCGAGGCTTCTAAAAATGATCCTGAAGCTTTTGGCGGTGGCTCTAACACGCATGGTGGCGGCTTTGATAATTTTGACAATCACTATGACACGTGTGGTGGTGATGATTACTCGTGTGGTGGTGGTGATTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006979 GO:0008150 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00562 ko00640 ko01100 ko01200 map00280 map00410 map00562 map00640 map01100 map01200

Pfam Domains

Protein Families

Aldedh

Protein Analysis

316

Amino Acids

33.14

Weight (kDa)

4.57

Isoelectric Point (pI)

41.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldedh	PF00171	38 - 92	1.3e-08	Aldehyde dehydrogenase family
Aldedh	PF00171	95 - 161	2.6e-13	Aldehyde dehydrogenase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14170
fragaria_vesca	FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_2g11390 FvH4_2g11390 FvH4_2g11390 FvH4_2g11390 FvH4_2g11410 FvH4_2g11410
malus_domestica	MD09G1234200.v1.1 MD15G1309700.v1.1
prunus_persica	Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.8G073100_v2.0.a1 Prupe.8G073100_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1
pyrus_communis	pycom09g15250 pycom15g27380
rosa_chinensis	RchiOBHm_Chr2g0110691 RchiOBHm_Chr2g0137621 RchiOBHm_Chr6g0270041 RchiOBHm_Chr6g0270061 RchiOBHm_Chr6g0270141
rosa_laevigata	RLG00000013815 RLG00000013819 RLG00000017831 RLG00000019609
rosa_multiflora	Rmu_co8442727.1_g000001 Rmu_sc0000389.1_g000042 Rmu_sc0000918.1_g000033 Rmu_sc0003043.1_g000019 Rmu_sc0004376.1_g000013
rosa_roxburghii	Rroxscaffold_2G00133030 Rroxscaffold_5G00350410 Rroxscaffold_5G00350420 Rroxscaffold_5G00350430 Rroxscaffold_6G00398360 Rroxscaffold_7G00198140 Rroxscaffold_7G00198180
rosa_rugosa	Rorug02G0168700 Rorug02G0168800 Rorug02G0168800 Rorug02G0338300 Rorug06G0052100 Rorug06G0052200 Rorug06G0052800 Rorug06G0052900
rosa_samantha	Rh2AG221000 Rh2AG387100 Rh2AG387200 Rh2AG547100 Rh2BG231100 Rh2BG504800 Rh2CG223400 Rh2CG374500 Rh2DG227200 Rh2DG410100 Rh2DG516200 Rh5CG251300 Rh6AG171200 Rh6AG171700 Rh6BG175700 Rh6BG176100 Rh6CG170500 Rh6CG171200 Rh6CG216400 Rh6DG162700 Rh6DG163000
rosa_wichuraiana	Rw2G017050 Rw6G014700 Rw6G014740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	72
AccII	CGCG	1 cut(s)	89
AciI	CCGC	8 cut(s)	9, 51, 70, 249, 510, 783, 852, 876
AclWI	GGATC	3 cut(s)	546, 773, 830
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	427
AcuI	CTGAAG	1 cut(s)	861
AcvI	CACGTG	1 cut(s)	909
AfaI	GTAC	3 cut(s)	101, 515, 737
AfiI	CCNNNNNNNGG	1 cut(s)	76
AflIII	ACRYGT	4 cut(s)	163, 732, 906, 908
AgsI	TTSAA	3 cut(s)	141, 235, 365
AjnI	CCWGG	2 cut(s)	117, 409
AluBI	AGCT	5 cut(s)	152, 530, 691, 710, 845
AluI	AGCT	5 cut(s)	152, 530, 691, 710, 845
Alw21I	GWGCWC	2 cut(s)	588, 732
Alw26I	GTCTC	4 cut(s)	76, 585, 718, 797
AlwI	GGATC	3 cut(s)	546, 773, 830
AlwNI	CAGNNNCTG	1 cut(s)	290
AoxI	GGCC	3 cut(s)	3, 304, 742
ApaI	GGGCCC	1 cut(s)	746
ApeKI	GCWGC	3 cut(s)	11, 263, 629
ApoI	RAATTY	1 cut(s)	427
AseI	ATTAAT	2 cut(s)	347, 681
AspS9I	GGNCC	5 cut(s)	305, 406, 437, 742, 743
AsuC2I	CCSGG	1 cut(s)	740
AsuHPI	GGTGA	3 cut(s)	536, 782, 929
AvaII	GGWCC	2 cut(s)	406, 437
BaeGI	GKGCMC	1 cut(s)	746
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	746
BauI	CACGAG	1 cut(s)	928
BbrPI	CACGTG	1 cut(s)	909
Bbv12I	GWGCWC	2 cut(s)	588, 732
BbvI	GCAGC	3 cut(s)	23, 250, 616
BccI	CCATC	3 cut(s)	383, 452, 794
BceAI	ACGGC	1 cut(s)	477
BciT130I	CCWGG	2 cut(s)	119, 411
BcnI	CCSGG	1 cut(s)	740
BcoDI	GTCTC	4 cut(s)	76, 585, 718, 797
BfaI	CTAG	2 cut(s)	375, 615
BfmI	CTRYAG	1 cut(s)	264
BglII	AGATCT	1 cut(s)	573
BisI	GCNGC	5 cut(s)	12, 249, 264, 630, 877
BlsI	GCNGC	5 cut(s)	13, 250, 265, 631, 878
Bme1390I	CCNGG	3 cut(s)	119, 411, 740
Bme18I	GGWCC	2 cut(s)	406, 437
BmgT120I	GGNCC	5 cut(s)	305, 406, 437, 742, 743
BmiI	GGNNCC	3 cut(s)	408, 743, 744
BmrFI	CCNGG	3 cut(s)	119, 411, 740
BmsI	GCATC	6 cut(s)	155, 195, 202, 214, 283, 688
BpuMI	CCSGG	1 cut(s)	740
BsaAI	YACGTR	1 cut(s)	909
BsaJI	CCNNGG	3 cut(s)	117, 409, 739
BsaXI	ACNNNNNCTCC	2 cut(s)	719, 749
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse3DI	GCAATG	1 cut(s)	14
BseBI	CCWGG	2 cut(s)	119, 411
BseDI	CCNNGG	3 cut(s)	117, 409, 739
BseGI	GGATG	1 cut(s)	555
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMI	GCAATG	1 cut(s)	14
BseMII	CTCAG	1 cut(s)	564
BseRI	GAGGAG	1 cut(s)	596
BseSI	GKGCMC	1 cut(s)	746
BseXI	GCAGC	3 cut(s)	23, 250, 616
Bsh1236I	CGCG	1 cut(s)	89
BshFI	GGCC	3 cut(s)	5, 306, 744
BsiHKAI	GWGCWC	2 cut(s)	588, 732
BsiSI	CCGG	1 cut(s)	739
BslFI	GGGAC	1 cut(s)	392
BslI	CCNNNNNNNGG	1 cut(s)	76
BsmAI	GTCTC	4 cut(s)	76, 585, 718, 797
BsmFI	GGGAC	1 cut(s)	392
BsnI	GGCC	3 cut(s)	5, 306, 744
Bsp120I	GGGCCC	1 cut(s)	742
Bsp1286I	GDGCHC	3 cut(s)	588, 732, 746
Bsp143I	GATC	4 cut(s)	538, 573, 778, 835
BspACI	CCGC	8 cut(s)	9, 51, 70, 249, 510, 783, 852, 876
BspANI	GGCC	3 cut(s)	5, 306, 744
BspCNI	CTCAG	1 cut(s)	563
BspFNI	CGCG	1 cut(s)	89
BspLI	GGNNCC	3 cut(s)	408, 743, 744
BspMAI	CTGCAG	1 cut(s)	268
BspPI	GGATC	3 cut(s)	546, 773, 830
BspQI	GCTCTTC	1 cut(s)	79
BsrBI	CCGCTC	1 cut(s)	72
BsrDI	GCAATG	1 cut(s)	14
BssECI	CCNNGG	3 cut(s)	117, 409, 739
BssMI	GATC	4 cut(s)	538, 573, 778, 835
BssSI	CACGAG	1 cut(s)	928
Bst2BI	CACGAG	1 cut(s)	928
Bst2UI	CCWGG	2 cut(s)	119, 411
Bst6I	CTCTTC	1 cut(s)	79
BstBAI	YACGTR	1 cut(s)	909
BstC8I	GCNNGC	5 cut(s)	124, 128, 320, 324, 703
BstDEI	CTNAG	3 cut(s)	186, 550, 577
BstEII	GGTNACC	1 cut(s)	770
BstF5I	GGATG	1 cut(s)	555
BstFNI	CGCG	1 cut(s)	89
BstKTI	GATC	4 cut(s)	541, 576, 781, 838
BstMAI	GTCTC	4 cut(s)	76, 585, 718, 797
BstMBI	GATC	4 cut(s)	538, 573, 778, 835
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 25, 86, 707
BstNI	CCWGG	2 cut(s)	119, 411
BstNSI	RCATGY	2 cut(s)	130, 736
BstPI	GGTNACC	1 cut(s)	770
BstSCI	CCNGG	3 cut(s)	117, 409, 738
BstSFI	CTRYAG	1 cut(s)	264
BstSLI	GKGCMC	1 cut(s)	746
BstUI	CGCG	1 cut(s)	89
BstV1I	GCAGC	3 cut(s)	23, 250, 616
BstX2I	RGATCY	1 cut(s)	573
BstYI	RGATCY	1 cut(s)	573
BsuRI	GGCC	3 cut(s)	5, 306, 744
BtsCI	GGATG	1 cut(s)	555
Cac8I	GCNNGC	5 cut(s)	124, 128, 320, 324, 703
CaiI	CAGNNNCTG	1 cut(s)	290
Cfr13I	GGNCC	5 cut(s)	305, 406, 437, 742, 743
Csp6I	GTAC	3 cut(s)	100, 514, 736
CviAII	CATG	8 cut(s)	127, 194, 422, 469, 733, 776, 812, 869
CviQI	GTAC	3 cut(s)	100, 514, 736
DdeI	CTNAG	3 cut(s)	186, 550, 577
DpnI	GATC	4 cut(s)	540, 575, 780, 837
DpnII	GATC	4 cut(s)	538, 573, 778, 835
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	79
EarI	CTCTTC	1 cut(s)	79
Eco24I	GRGCYC	1 cut(s)	746
Eco47I	GGWCC	2 cut(s)	406, 437
Eco57I	CTGAAG	1 cut(s)	861
Eco72I	CACGTG	1 cut(s)	909
Eco91I	GGTNACC	1 cut(s)	770
EcoO109I	RGGNCCY	2 cut(s)	742, 743
EcoO65I	GGTNACC	1 cut(s)	770
EcoRII	CCWGG	2 cut(s)	117, 409
EcoT38I	GRGCYC	1 cut(s)	746
FaeI	CATG	8 cut(s)	130, 197, 425, 472, 736, 779, 815, 872
FaqI	GGGAC	1 cut(s)	392
FatI	CATG	8 cut(s)	126, 193, 421, 468, 732, 775, 811, 868
FauI	CCCGC	2 cut(s)	503, 790
Fnu4HI	GCNGC	5 cut(s)	12, 249, 264, 630, 877
FokI	GGATG	1 cut(s)	542
FriOI	GRGCYC	1 cut(s)	746
Fsp4HI	GCNGC	5 cut(s)	12, 249, 264, 630, 877
FspBI	CTAG	2 cut(s)	375, 615
GluI	GCNGC	5 cut(s)	12, 249, 264, 630, 877
HaeIII	GGCC	3 cut(s)	5, 306, 744
HapII	CCGG	1 cut(s)	739
Hin1II	CATG	8 cut(s)	130, 197, 425, 472, 736, 779, 815, 872
HindIII	AAGCTT	3 cut(s)	528, 689, 843
HinfI	GANTC	4 cut(s)	91, 598, 749, 761
HpaII	CCGG	1 cut(s)	739
HphI	GGTGA	3 cut(s)	536, 782, 929
Hpy188I	TCNGA	3 cut(s)	441, 553, 754
Hpy188III	TCNNGA	4 cut(s)	38, 141, 221, 839
HpyAV	CCTTC	3 cut(s)	643, 653, 809
HpyCH4IV	ACGT	2 cut(s)	165, 908
HpyCH4V	TGCA	8 cut(s)	47, 130, 197, 215, 266, 342, 632, 646
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 25, 86, 707
HpyF3I	CTNAG	3 cut(s)	186, 550, 577
HpySE526I	ACGT	2 cut(s)	165, 908
Hsp92II	CATG	8 cut(s)	130, 197, 425, 472, 736, 779, 815, 872
Kzo9I	GATC	4 cut(s)	538, 573, 778, 835
LguI	GCTCTTC	1 cut(s)	79
LmnI	GCTCC	3 cut(s)	24, 583, 727
Lsp1109I	GCAGC	3 cut(s)	23, 250, 616
LweI	GCATC	6 cut(s)	155, 195, 202, 214, 283, 688
MaeI	CTAG	2 cut(s)	375, 615
MaeII	ACGT	2 cut(s)	165, 908
MaeIII	GTNAC	3 cut(s)	457, 605, 770
MalI	GATC	4 cut(s)	540, 575, 780, 837
MbiI	CCGCTC	1 cut(s)	72
MboI	GATC	4 cut(s)	538, 573, 778, 835
MboII	GAAGA	2 cut(s)	66, 98
MfeI	CAATTG	1 cut(s)	198
MflI	RGATCY	1 cut(s)	573
MhlI	GDGCHC	3 cut(s)	588, 732, 746
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	7 cut(s)	198, 312, 344, 427, 432, 633, 886
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	755
MmeI	TCCRAC	1 cut(s)	464
MnlI	CCTC	6 cut(s)	64, 68, 515, 574, 619, 814
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	347, 431, 681
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	251, 785
MspI	CCGG	1 cut(s)	739
MspR9I	CCNGG	3 cut(s)	119, 411, 740
MunI	CAATTG	1 cut(s)	198
MvaI	CCWGG	2 cut(s)	119, 411
MvnI	CGCG	1 cut(s)	89
MwoI	GCNNNNNNNGC	4 cut(s)	11, 25, 86, 707
NciI	CCSGG	1 cut(s)	740
NdeII	GATC	4 cut(s)	538, 573, 778, 835
NlaIII	CATG	8 cut(s)	130, 197, 425, 472, 736, 779, 815, 872
NlaIV	GGNNCC	3 cut(s)	408, 743, 744
NmuCI	GTSAC	3 cut(s)	457, 605, 770
NspI	RCATGY	2 cut(s)	130, 736
PaeI	GCATGC	1 cut(s)	130
PciI	ACATGT	1 cut(s)	732
PciSI	GCTCTTC	1 cut(s)	79
PfeI	GAWTC	3 cut(s)	91, 598, 749
PkrI	GCNGC	5 cut(s)	13, 250, 265, 631, 878
PleI	GAGTC	1 cut(s)	755
PmaCI	CACGTG	1 cut(s)	909
PmlI	CACGTG	1 cut(s)	909
PpsI	GAGTC	1 cut(s)	755
Ppu21I	YACGTR	1 cut(s)	909
PscI	ACATGT	1 cut(s)	732
PshBI	ATTAAT	2 cut(s)	347, 681
Psp6I	CCWGG	2 cut(s)	117, 409
PspCI	CACGTG	1 cut(s)	909
PspEI	GGTNACC	1 cut(s)	770
PspGI	CCWGG	2 cut(s)	117, 409
PspN4I	GGNNCC	3 cut(s)	408, 743, 744
PspOMI	GGGCCC	1 cut(s)	742
PspPI	GGNCC	5 cut(s)	305, 406, 437, 742, 743
PstI	CTGCAG	1 cut(s)	268
PstNI	CAGNNNCTG	1 cut(s)	290
PsuI	RGATCY	1 cut(s)	573
RsaI	GTAC	3 cut(s)	101, 515, 737
RsaNI	GTAC	3 cut(s)	100, 514, 736
SapI	GCTCTTC	1 cut(s)	79
SaqAI	TTAA	3 cut(s)	347, 431, 681
SatI	GCNGC	5 cut(s)	12, 249, 264, 630, 877
Sau3AI	GATC	4 cut(s)	538, 573, 778, 835
Sau96I	GGNCC	5 cut(s)	305, 406, 437, 742, 743
SchI	GAGTC	1 cut(s)	755
ScrFI	CCNGG	3 cut(s)	119, 411, 740
SduI	GDGCHC	3 cut(s)	588, 732, 746
SetI	ASST	9 cut(s)	154, 168, 292, 526, 532, 693, 712, 847, 911
SfaNI	GCATC	6 cut(s)	155, 195, 202, 214, 283, 688
SfcI	CTRYAG	1 cut(s)	264
SinI	GGWCC	2 cut(s)	406, 437
SphI	GCATGC	1 cut(s)	130
Sse9I	AATT	7 cut(s)	198, 312, 344, 427, 432, 633, 886
SsiI	CCGC	8 cut(s)	9, 51, 70, 249, 510, 783, 852, 876
SspMI	CTAG	2 cut(s)	375, 615
StyD4I	CCNGG	3 cut(s)	117, 409, 738
TaiI	ACGT	2 cut(s)	168, 911
TasI	AATT	7 cut(s)	198, 312, 344, 427, 432, 633, 886
TatI	WGTACW	1 cut(s)	99
TauI	GCSGC	2 cut(s)	251, 879
TfiI	GAWTC	3 cut(s)	91, 598, 749
Tru1I	TTAA	3 cut(s)	347, 431, 681
Tru9I	TTAA	3 cut(s)	347, 431, 681
TseFI	GTSAC	3 cut(s)	457, 605, 770
TseI	GCWGC	3 cut(s)	11, 263, 629
Tsp45I	GTSAC	3 cut(s)	457, 605, 770
TspDTI	ATGAA	2 cut(s)	581, 828
TspGWI	ACGGA	3 cut(s)	11, 349, 671
VpaK11BI	GGWCC	2 cut(s)	406, 437
VspI	ATTAAT	2 cut(s)	347, 681
XapI	RAATTY	1 cut(s)	427
XceI	RCATGY	2 cut(s)	130, 736
XcmI	CCANNNNNNNNNTGG	1 cut(s)	782
XspI	CTAG	2 cut(s)	375, 615

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.