RLG00000019609
HSP70 Family

Belongs to the heat shock protein 70 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000503
Physical Location & Seq
Reverse (-)
54212745 .. 54214439
1695 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019609

Sequence Viewer

Length: 489 bp
ATGGCCACCGCAGCATTGCTCCGTTCACTATGCTGTCGTGATGTTGCAACCGCCTCCCTCTCTGCCTACCGCTCTTTGAATAGCACTGTCAAGTCCCCGCTTCAGGGTCACCACTGGGTAAGCTTGGCAAGACCTTTTAGTTGCATACCTGTTTGGAATGATGTGAAGGGGATTGACTCGGTCACCACCAGCTCATCTGTGGCTGAGATGGAGAAAAAGCTGGGGTTTCTAGAAAGGAAAGCTCATTTTGAAATCAGAAAACATACGGAGATAGTCGTATCGAACATTCGGATGATAAAGAGGTGCAAGACCAAGATTCCCGGCGAGATTGTTAAAAGAATTGAGGATGAGGTTTTAGATCTGAGAAAAGCAAGTAGAGGGAAGAGTGTTTTTAGGGAACCAAAATCCAAGATGGACGAGAACTTGGCATGTCAAAATGACTCTGTTGTATGGGGATCACATGGGGATAAGTTTATACTACTAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03018 ko04212 ko05152 map03018 map04212 map05152
Pfam Domains
Protein Families
HSP70

Protein Analysis

163

Amino Acids

18.21

Weight (kDa)

9.42

Isoelectric Point (pI)

45.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000503)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14170
fragaria_vesca FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_2g11390 FvH4_2g11390 FvH4_2g11390 FvH4_2g11390 FvH4_2g11410 FvH4_2g11410
malus_domestica MD09G1234200.v1.1 MD15G1309700.v1.1
prunus_persica Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.8G073100_v2.0.a1 Prupe.8G073100_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1
pyrus_communis pycom09g15250 pycom15g27380
rosa_chinensis RchiOBHm_Chr2g0110691 RchiOBHm_Chr2g0137621 RchiOBHm_Chr6g0270041 RchiOBHm_Chr6g0270061 RchiOBHm_Chr6g0270141
rosa_laevigata RLG00000013815 RLG00000013819 RLG00000017831 RLG00000019609
rosa_multiflora Rmu_co8442727.1_g000001 Rmu_sc0000389.1_g000042 Rmu_sc0000918.1_g000033 Rmu_sc0003043.1_g000019 Rmu_sc0004376.1_g000013
rosa_roxburghii Rroxscaffold_2G00133030 Rroxscaffold_5G00350410 Rroxscaffold_5G00350420 Rroxscaffold_5G00350430 Rroxscaffold_6G00398360 Rroxscaffold_7G00198140 Rroxscaffold_7G00198180
rosa_rugosa Rorug02G0168700 Rorug02G0168800 Rorug02G0168800 Rorug02G0338300 Rorug06G0052100 Rorug06G0052200 Rorug06G0052800 Rorug06G0052900
rosa_samantha Rh2AG221000 Rh2AG387100 Rh2AG387200 Rh2AG547100 Rh2BG231100 Rh2BG504800 Rh2CG223400 Rh2CG374500 Rh2DG227200 Rh2DG410100 Rh2DG516200 Rh5CG251300 Rh6AG171200 Rh6AG171700 Rh6BG175700 Rh6BG176100 Rh6CG170500 Rh6CG171200 Rh6CG216400 Rh6DG162700 Rh6DG163000
rosa_wichuraiana Rw2G017050 Rw6G014700 Rw6G014740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 72
AciI CCGC 4 cut(s) 9, 51, 70, 98
AclWI GGATC 1 cut(s) 463
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 86
AfiI CCNNNNNNNGG 2 cut(s) 103, 104
AgsI TTSAA 2 cut(s) 79, 251
AluBI AGCT 4 cut(s) 123, 192, 220, 242
AluI AGCT 4 cut(s) 123, 192, 220, 242
AlwI GGATC 1 cut(s) 463
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 11
AsuC2I CCSGG 1 cut(s) 321
AsuHPI GGTGA 2 cut(s) 101, 175
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 1 cut(s) 23
BccI CCATC 2 cut(s) 202, 406
BcnI CCSGG 1 cut(s) 321
BfaI CTAG 2 cut(s) 230, 482
BglII AGATCT 1 cut(s) 358
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
Bme1390I CCNGG 1 cut(s) 321
BmiI GGNNCC 1 cut(s) 399
BmrFI CCNGG 1 cut(s) 321
BmrI ACTGGG 1 cut(s) 124
BmuI ACTGGG 1 cut(s) 124
BpuMI CCSGG 1 cut(s) 321
Bsc4I CCNNNNNNNGG 2 cut(s) 103, 104
Bse1I ACTGG 1 cut(s) 119
Bse3DI GCAATG 1 cut(s) 14
BseGI GGATG 2 cut(s) 297, 352
BseLI CCNNNNNNNGG 2 cut(s) 103, 104
BseMI GCAATG 1 cut(s) 14
BseMII CTCAG 2 cut(s) 195, 353
BseNI ACTGG 1 cut(s) 119
BseXI GCAGC 1 cut(s) 23
BseYI CCCAGC 1 cut(s) 220
BshFI GGCC 1 cut(s) 5
BsiSI CCGG 1 cut(s) 321
BslFI GGGAC 1 cut(s) 79
BslI CCNNNNNNNGG 2 cut(s) 103, 104
BsmFI GGGAC 1 cut(s) 79
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 2 cut(s) 358, 455
BspACI CCGC 4 cut(s) 9, 51, 70, 98
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 196, 354
BspLI GGNNCC 1 cut(s) 399
BspPI GGATC 1 cut(s) 463
BsrBI CCGCTC 1 cut(s) 72
BsrDI GCAATG 1 cut(s) 14
BsrI ACTGG 1 cut(s) 119
BssMI GATC 2 cut(s) 358, 455
Bst4CI ACNGT 1 cut(s) 88
Bst6I CTCTTC 1 cut(s) 377
BstDEI CTNAG 2 cut(s) 204, 362
BstEII GGTNACC 2 cut(s) 107, 181
BstF5I GGATG 2 cut(s) 297, 352
BstKTI GATC 2 cut(s) 361, 458
BstMBI GATC 2 cut(s) 358, 455
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstNSI RCATGY 1 cut(s) 432
BstPI GGTNACC 2 cut(s) 107, 181
BstSCI CCNGG 1 cut(s) 319
BstV1I GCAGC 1 cut(s) 23
BstX2I RGATCY 1 cut(s) 358
BstYI RGATCY 1 cut(s) 358
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 2 cut(s) 297, 352
BtsIMutI CAGTG 2 cut(s) 84, 112
CviAII CATG 2 cut(s) 429, 461
CviJI RGCY 6 cut(s) 5, 123, 192, 203, 220, 242
CviKI_1 RGCY 6 cut(s) 5, 123, 192, 203, 220, 242
DdeI CTNAG 2 cut(s) 204, 362
DpnI GATC 2 cut(s) 360, 457
DpnII GATC 2 cut(s) 358, 455
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 377
EarI CTCTTC 1 cut(s) 377
Eco57I CTGAAG 1 cut(s) 86
Eco91I GGTNACC 2 cut(s) 107, 181
EcoO65I GGTNACC 2 cut(s) 107, 181
FaeI CATG 2 cut(s) 432, 464
FaiI YATR 7 cut(s) 31, 146, 264, 430, 451, 462, 476
FaqI GGGAC 1 cut(s) 79
FatI CATG 2 cut(s) 428, 460
FauI CCCGC 1 cut(s) 105
Fnu4HI GCNGC 1 cut(s) 12
FokI GGATG 2 cut(s) 304, 359
Fsp4HI GCNGC 1 cut(s) 12
FspBI CTAG 2 cut(s) 230, 482
GluI GCNGC 1 cut(s) 12
GsaI CCCAGC 1 cut(s) 224
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 321
Hin1II CATG 2 cut(s) 432, 464
HindIII AAGCTT 1 cut(s) 121
HinfI GANTC 3 cut(s) 176, 316, 440
HpaII CCGG 1 cut(s) 321
HphI GGTGA 2 cut(s) 101, 175
Hpy166II GTNNAC 1 cut(s) 26
Hpy188I TCNGA 3 cut(s) 257, 291, 363
Hpy188III TCNNGA 2 cut(s) 38, 230
Hpy8I GTNNAC 1 cut(s) 26
HpyAV CCTTC 1 cut(s) 160
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4V TGCA 3 cut(s) 47, 144, 306
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 2 cut(s) 204, 362
Hsp92II CATG 2 cut(s) 432, 464
Kzo9I GATC 2 cut(s) 358, 455
LmnI GCTCC 1 cut(s) 24
LpnPI CCDG 6 cut(s) 89, 100, 162, 202, 206, 334
Lsp1109I GCAGC 1 cut(s) 23
MaeI CTAG 2 cut(s) 230, 482
MaeIII GTNAC 2 cut(s) 107, 181
MalI GATC 2 cut(s) 360, 457
MbiI CCGCTC 1 cut(s) 72
MboI GATC 2 cut(s) 358, 455
MboII GAAGA 1 cut(s) 394
MflI RGATCY 1 cut(s) 358
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 339
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 170, 434
MnlI CCTC 6 cut(s) 64, 68, 294, 337, 343, 371
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 333
MslI CAYNNNNRTG 1 cut(s) 290
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 321
MspR9I CCNGG 1 cut(s) 321
MwoI GCNNNNNNNGC 1 cut(s) 11
NciI CCSGG 1 cut(s) 321
NdeII GATC 2 cut(s) 358, 455
NlaIII CATG 2 cut(s) 432, 464
NlaIV GGNNCC 1 cut(s) 399
NmuCI GTSAC 2 cut(s) 107, 181
NspI RCATGY 1 cut(s) 432
PfeI GAWTC 1 cut(s) 316
PflFI GACNNNGTC 1 cut(s) 179
PkrI GCNGC 1 cut(s) 13
PleI GAGTC 2 cut(s) 170, 434
PpsI GAGTC 2 cut(s) 170, 434
PspEI GGTNACC 2 cut(s) 107, 181
PspFI CCCAGC 1 cut(s) 220
PspN4I GGNNCC 1 cut(s) 399
PsuI RGATCY 1 cut(s) 358
PsyI GACNNNGTC 1 cut(s) 179
RseI CAYNNNNRTG 1 cut(s) 290
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 2 cut(s) 358, 455
SchI GAGTC 2 cut(s) 170, 434
ScrFI CCNGG 1 cut(s) 321
SetI ASST 8 cut(s) 125, 136, 151, 194, 222, 244, 305, 354
SmiMI CAYNNNNRTG 1 cut(s) 290
Sse9I AATT 1 cut(s) 339
SsiI CCGC 4 cut(s) 9, 51, 70, 98
SspMI CTAG 2 cut(s) 230, 482
StyD4I CCNGG 1 cut(s) 319
TaaI ACNGT 1 cut(s) 88
TaqI TCGA 1 cut(s) 281
TaqII GACCGA 1 cut(s) 169
TasI AATT 1 cut(s) 339
TfiI GAWTC 1 cut(s) 316
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TscAI CASTG 2 cut(s) 91, 119
TseFI GTSAC 2 cut(s) 107, 181
TseI GCWGC 1 cut(s) 11
Tsp45I GTSAC 2 cut(s) 107, 181
TspGWI ACGGA 2 cut(s) 11, 281
TspRI CASTG 2 cut(s) 91, 119
Tth111I GACNNNGTC 1 cut(s) 179
XbaI TCTAGA 1 cut(s) 229
XceI RCATGY 1 cut(s) 432
XcmI CCANNNNNNNNNTGG 1 cut(s) 196
XspI CTAG 2 cut(s) 230, 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.