Rh2AG387100
HSP70 Family

Belongs to the heat shock protein 70 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000503
Physical Location & Seq
Reverse (-)
57846072 .. 57846743
672 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG387100.1

Sequence Viewer

Length: 576 bp
ATGGTCATATGGAACATTCGGATGATAAAGAGGTACAAAACCAAGATTCCCGGCGAGACTGTTAAAAGAATTGAGGATGAGGCTTTAGATTTGAGAAAAGCAAATCAGTTTAGTAGTGATGATGAGCAGGGTGGCGGGTACTTTGGAGGTGAAGCTTCTTGGGATCAGTCTGGCTCAGACATCCCCATTATGAACAAGATCTTAGAGGAGCACAGAGACAAGATTCCAAGTGACTTGGCTAGAGAAGTTGAGGCTGCAATTACAGATTTGCAGAAGGCAACGGAAGGGGGTAATGCTGATGAGATTAATGCGAAGCTTGACGATGCCAGCAAAGCTGTCTCAAAGATTGGGGAGCACATGTACCGGGGCCCTGATTCTGATGATGACTCTGTTGGTGACCATGATCCCGCTGGTTGTCTCAATGATGGGGAATACCATGAAGGCGAGGCTTCTAAAAATGATCCTGAAGCTTTTGGCGGTGGCTCTAACACGCATGGTGGCGGCTTTGATAATTTTGACAATCACTATGACACGTGTGGTGGTGATGATTACTCGTGTGGTGGTGGTGATTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03018 ko04212 ko05152 map03018 map04212 map05152
Pfam Domains
Protein Families
HSP70

Protein Analysis

191

Amino Acids

20.71

Weight (kDa)

4.38

Isoelectric Point (pI)

40.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000503)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14170
fragaria_vesca FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_2g11390 FvH4_2g11390 FvH4_2g11390 FvH4_2g11390 FvH4_2g11410 FvH4_2g11410
malus_domestica MD09G1234200.v1.1 MD15G1309700.v1.1
prunus_persica Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.8G073100_v2.0.a1 Prupe.8G073100_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1
pyrus_communis pycom09g15250 pycom15g27380
rosa_chinensis RchiOBHm_Chr2g0110691 RchiOBHm_Chr2g0137621 RchiOBHm_Chr6g0270041 RchiOBHm_Chr6g0270061 RchiOBHm_Chr6g0270141
rosa_laevigata RLG00000013815 RLG00000013819 RLG00000017831 RLG00000019609
rosa_multiflora Rmu_co8442727.1_g000001 Rmu_sc0000389.1_g000042 Rmu_sc0000918.1_g000033 Rmu_sc0003043.1_g000019 Rmu_sc0004376.1_g000013
rosa_roxburghii Rroxscaffold_2G00133030 Rroxscaffold_5G00350410 Rroxscaffold_5G00350420 Rroxscaffold_5G00350430 Rroxscaffold_6G00398360 Rroxscaffold_7G00198140 Rroxscaffold_7G00198180
rosa_rugosa Rorug02G0168700 Rorug02G0168800 Rorug02G0168800 Rorug02G0338300 Rorug06G0052100 Rorug06G0052200 Rorug06G0052800 Rorug06G0052900
rosa_samantha Rh2AG221000 Rh2AG387100 Rh2AG387200 Rh2AG547100 Rh2BG231100 Rh2BG504800 Rh2CG223400 Rh2CG374500 Rh2DG227200 Rh2DG410100 Rh2DG516200 Rh5CG251300 Rh6AG171200 Rh6AG171700 Rh6BG175700 Rh6BG176100 Rh6CG170500 Rh6CG171200 Rh6CG216400 Rh6DG162700 Rh6DG163000
rosa_wichuraiana Rw2G017050 Rw6G014700 Rw6G014740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 135, 408, 477, 501
AclWI GGATC 3 cut(s) 171, 398, 455
AcuI CTGAAG 1 cut(s) 486
AcvI CACGTG 1 cut(s) 534
AfaI GTAC 3 cut(s) 35, 140, 362
AflIII ACRYGT 3 cut(s) 357, 531, 533
AluBI AGCT 4 cut(s) 155, 316, 335, 470
AluI AGCT 4 cut(s) 155, 316, 335, 470
Alw21I GWGCWC 2 cut(s) 213, 357
Alw26I GTCTC 4 cut(s) 50, 210, 343, 422
AlwI GGATC 3 cut(s) 171, 398, 455
AoxI GGCC 1 cut(s) 367
ApaI GGGCCC 1 cut(s) 371
ApeKI GCWGC 1 cut(s) 254
AseI ATTAAT 1 cut(s) 306
AspS9I GGNCC 2 cut(s) 367, 368
AsuC2I CCSGG 2 cut(s) 51, 365
AsuHPI GGTGA 3 cut(s) 161, 407, 554
BaeGI GKGCMC 1 cut(s) 371
BanII GRGCYC 1 cut(s) 371
BauI CACGAG 1 cut(s) 553
BbrPI CACGTG 1 cut(s) 534
Bbv12I GWGCWC 2 cut(s) 213, 357
BbvI GCAGC 1 cut(s) 241
BccI CCATC 1 cut(s) 419
BcnI CCSGG 2 cut(s) 51, 365
BcoDI GTCTC 4 cut(s) 50, 210, 343, 422
BfaI CTAG 1 cut(s) 240
BglII AGATCT 1 cut(s) 198
BisI GCNGC 2 cut(s) 255, 502
BlsI GCNGC 2 cut(s) 256, 503
Bme1390I CCNGG 2 cut(s) 51, 365
BmgT120I GGNCC 2 cut(s) 367, 368
BmiI GGNNCC 2 cut(s) 368, 369
BmrFI CCNGG 2 cut(s) 51, 365
BmsI GCATC 1 cut(s) 313
BpuMI CCSGG 2 cut(s) 51, 365
BsaAI YACGTR 1 cut(s) 534
BsaJI CCNNGG 1 cut(s) 364
BsaXI ACNNNNNCTCC 2 cut(s) 344, 374
BseDI CCNNGG 1 cut(s) 364
BseGI GGATG 3 cut(s) 27, 82, 180
BseMII CTCAG 1 cut(s) 189
BseRI GAGGAG 1 cut(s) 221
BseSI GKGCMC 1 cut(s) 371
BseXI GCAGC 1 cut(s) 241
BshFI GGCC 1 cut(s) 369
BsiHKAI GWGCWC 2 cut(s) 213, 357
BsiSI CCGG 2 cut(s) 51, 364
BsmAI GTCTC 4 cut(s) 50, 210, 343, 422
BsnI GGCC 1 cut(s) 369
Bsp120I GGGCCC 1 cut(s) 367
Bsp1286I GDGCHC 3 cut(s) 213, 357, 371
Bsp143I GATC 4 cut(s) 163, 198, 403, 460
BspACI CCGC 4 cut(s) 135, 408, 477, 501
BspANI GGCC 1 cut(s) 369
BspCNI CTCAG 1 cut(s) 188
BspLI GGNNCC 2 cut(s) 368, 369
BspPI GGATC 3 cut(s) 171, 398, 455
BssECI CCNNGG 1 cut(s) 364
BssMI GATC 4 cut(s) 163, 198, 403, 460
BssSI CACGAG 1 cut(s) 553
Bst2BI CACGAG 1 cut(s) 553
Bst4CI ACNGT 1 cut(s) 61
BstBAI YACGTR 1 cut(s) 534
BstC8I GCNNGC 1 cut(s) 328
BstDEI CTNAG 2 cut(s) 175, 202
BstEII GGTNACC 1 cut(s) 395
BstF5I GGATG 3 cut(s) 27, 82, 180
BstKTI GATC 4 cut(s) 166, 201, 406, 463
BstMAI GTCTC 4 cut(s) 50, 210, 343, 422
BstMBI GATC 4 cut(s) 163, 198, 403, 460
BstMWI GCNNNNNNNGC 1 cut(s) 332
BstNSI RCATGY 1 cut(s) 361
BstPI GGTNACC 1 cut(s) 395
BstSCI CCNGG 2 cut(s) 49, 363
BstSLI GKGCMC 1 cut(s) 371
BstV1I GCAGC 1 cut(s) 241
BstX2I RGATCY 1 cut(s) 198
BstYI RGATCY 1 cut(s) 198
BsuRI GGCC 1 cut(s) 369
BtsCI GGATG 3 cut(s) 27, 82, 180
Cac8I GCNNGC 1 cut(s) 328
Cfr13I GGNCC 2 cut(s) 367, 368
Csp6I GTAC 3 cut(s) 34, 139, 361
CviAII CATG 4 cut(s) 358, 401, 437, 494
CviQI GTAC 3 cut(s) 34, 139, 361
DdeI CTNAG 2 cut(s) 175, 202
DpnI GATC 4 cut(s) 165, 200, 405, 462
DpnII GATC 4 cut(s) 163, 198, 403, 460
Eco24I GRGCYC 1 cut(s) 371
Eco57I CTGAAG 1 cut(s) 486
Eco72I CACGTG 1 cut(s) 534
Eco91I GGTNACC 1 cut(s) 395
EcoO109I RGGNCCY 2 cut(s) 367, 368
EcoO65I GGTNACC 1 cut(s) 395
EcoT38I GRGCYC 1 cut(s) 371
FaeI CATG 4 cut(s) 361, 404, 440, 497
FaiI YATR 8 cut(s) 8, 10, 191, 359, 402, 438, 495, 528
FatI CATG 4 cut(s) 357, 400, 436, 493
FauI CCCGC 2 cut(s) 128, 415
FauNDI CATATG 1 cut(s) 8
Fnu4HI GCNGC 2 cut(s) 255, 502
FokI GGATG 3 cut(s) 34, 89, 167
FriOI GRGCYC 1 cut(s) 371
Fsp4HI GCNGC 2 cut(s) 255, 502
FspBI CTAG 1 cut(s) 240
GluI GCNGC 2 cut(s) 255, 502
HaeIII GGCC 1 cut(s) 369
HapII CCGG 2 cut(s) 51, 364
Hin1II CATG 4 cut(s) 361, 404, 440, 497
HindIII AAGCTT 3 cut(s) 153, 314, 468
HinfI GANTC 4 cut(s) 46, 223, 374, 386
HpaII CCGG 2 cut(s) 51, 364
HphI GGTGA 3 cut(s) 161, 407, 554
Hpy188I TCNGA 3 cut(s) 21, 178, 379
Hpy188III TCNNGA 1 cut(s) 464
HpyAV CCTTC 3 cut(s) 268, 278, 434
HpyCH4III ACNGT 1 cut(s) 61
HpyCH4IV ACGT 1 cut(s) 533
HpyCH4V TGCA 2 cut(s) 257, 271
HpyF10VI GCNNNNNNNGC 1 cut(s) 332
HpyF3I CTNAG 2 cut(s) 175, 202
HpySE526I ACGT 1 cut(s) 533
Hsp92II CATG 4 cut(s) 361, 404, 440, 497
Kzo9I GATC 4 cut(s) 163, 198, 403, 460
LmnI GCTCC 2 cut(s) 208, 352
LpnPI CCDG 8 cut(s) 64, 113, 156, 340, 377, 384, 396, 477
Lsp1109I GCAGC 1 cut(s) 241
LweI GCATC 1 cut(s) 313
MaeI CTAG 1 cut(s) 240
MaeII ACGT 1 cut(s) 533
MaeIII GTNAC 2 cut(s) 230, 395
MalI GATC 4 cut(s) 165, 200, 405, 462
MboI GATC 4 cut(s) 163, 198, 403, 460
MflI RGATCY 1 cut(s) 198
MhlI GDGCHC 3 cut(s) 213, 357, 371
MluCI AATT 3 cut(s) 69, 258, 511
MlyI GAGTC 1 cut(s) 380
MnlI CCTC 7 cut(s) 24, 67, 73, 140, 199, 244, 439
MseI TTAA 2 cut(s) 63, 306
MslI CAYNNNNRTG 1 cut(s) 20
MspA1I CMGCKG 1 cut(s) 410
MspI CCGG 2 cut(s) 51, 364
MspR9I CCNGG 2 cut(s) 51, 365
MwoI GCNNNNNNNGC 1 cut(s) 332
NciI CCSGG 2 cut(s) 51, 365
NdeI CATATG 1 cut(s) 8
NdeII GATC 4 cut(s) 163, 198, 403, 460
NlaIII CATG 4 cut(s) 361, 404, 440, 497
NlaIV GGNNCC 2 cut(s) 368, 369
NmuCI GTSAC 2 cut(s) 230, 395
NspI RCATGY 1 cut(s) 361
PciI ACATGT 1 cut(s) 357
PfeI GAWTC 3 cut(s) 46, 223, 374
PkrI GCNGC 2 cut(s) 256, 503
PleI GAGTC 1 cut(s) 380
PmaCI CACGTG 1 cut(s) 534
PmlI CACGTG 1 cut(s) 534
PpsI GAGTC 1 cut(s) 380
Ppu21I YACGTR 1 cut(s) 534
PscI ACATGT 1 cut(s) 357
PshBI ATTAAT 1 cut(s) 306
PspCI CACGTG 1 cut(s) 534
PspEI GGTNACC 1 cut(s) 395
PspN4I GGNNCC 2 cut(s) 368, 369
PspOMI GGGCCC 1 cut(s) 367
PspPI GGNCC 2 cut(s) 367, 368
PsuI RGATCY 1 cut(s) 198
RsaI GTAC 3 cut(s) 35, 140, 362
RsaNI GTAC 3 cut(s) 34, 139, 361
RseI CAYNNNNRTG 1 cut(s) 20
SaqAI TTAA 2 cut(s) 63, 306
SatI GCNGC 2 cut(s) 255, 502
Sau3AI GATC 4 cut(s) 163, 198, 403, 460
Sau96I GGNCC 2 cut(s) 367, 368
SchI GAGTC 1 cut(s) 380
ScrFI CCNGG 2 cut(s) 51, 365
SduI GDGCHC 3 cut(s) 213, 357, 371
SetI ASST 7 cut(s) 35, 151, 157, 318, 337, 472, 536
SfaNI GCATC 1 cut(s) 313
SmiMI CAYNNNNRTG 1 cut(s) 20
Sse9I AATT 3 cut(s) 69, 258, 511
SsiI CCGC 4 cut(s) 135, 408, 477, 501
SspMI CTAG 1 cut(s) 240
StyD4I CCNGG 2 cut(s) 49, 363
TaaI ACNGT 1 cut(s) 61
TaiI ACGT 1 cut(s) 536
TasI AATT 3 cut(s) 69, 258, 511
TauI GCSGC 1 cut(s) 504
TfiI GAWTC 3 cut(s) 46, 223, 374
Tru1I TTAA 2 cut(s) 63, 306
Tru9I TTAA 2 cut(s) 63, 306
TseFI GTSAC 2 cut(s) 230, 395
TseI GCWGC 1 cut(s) 254
Tsp45I GTSAC 2 cut(s) 230, 395
TspDTI ATGAA 2 cut(s) 206, 453
TspGWI ACGGA 1 cut(s) 296
VspI ATTAAT 1 cut(s) 306
XceI RCATGY 1 cut(s) 361
XcmI CCANNNNNNNNNTGG 1 cut(s) 407
XspI CTAG 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.