Rroxscaffold_6G00398360

Aldehyde dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000503
Physical Location & Seq
Forward (+)
20237768 .. 20240548
2781 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00398360.1

Sequence Viewer

Length: 330 bp
ATGGGGGGCAAAAATCATCCTATTGTCACGCCTGGTGCAAGTCCTGATGCTACTTTGAATGCTCTAGTTGTCTCTGGTTTTGGTGCTGCAGGACAGAGGTGCATGGCACTTAGCACAGTTGTTTTCGTTGGAGGTTCAAAGTCATGGTATGCAAACATGGGGATGCAAATGCGAGGGCTAGATTCGGTGGTTGCCATACAAGATTGGTGTTGGAGGGCCATCATCGGGTGGCTTAGGAGGGGAGACCGGTGTCGGCCGCCATTGATGGAACGCAGAGGTCAAGAGCCTAGGGATTGTCACCGATTCATGATTTTGTGGAACAATGACTAA

Protein Analysis

109

Amino Acids

12.11

Weight (kDa)

9.57

Isoelectric Point (pI)

47.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldedh PF00171 1 - 42 7.8e-07 Aldehyde dehydrogenase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000503)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14170
fragaria_vesca FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_2g11390 FvH4_2g11390 FvH4_2g11390 FvH4_2g11390 FvH4_2g11410 FvH4_2g11410
malus_domestica MD09G1234200.v1.1 MD15G1309700.v1.1
prunus_persica Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.8G073100_v2.0.a1 Prupe.8G073100_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1
pyrus_communis pycom09g15250 pycom15g27380
rosa_chinensis RchiOBHm_Chr2g0110691 RchiOBHm_Chr2g0137621 RchiOBHm_Chr6g0270041 RchiOBHm_Chr6g0270061 RchiOBHm_Chr6g0270141
rosa_laevigata RLG00000013815 RLG00000013819 RLG00000017831 RLG00000019609
rosa_multiflora Rmu_co8442727.1_g000001 Rmu_sc0000389.1_g000042 Rmu_sc0000918.1_g000033 Rmu_sc0003043.1_g000019 Rmu_sc0004376.1_g000013
rosa_roxburghii Rroxscaffold_2G00133030 Rroxscaffold_5G00350410 Rroxscaffold_5G00350420 Rroxscaffold_5G00350430 Rroxscaffold_6G00398360 Rroxscaffold_7G00198140 Rroxscaffold_7G00198180
rosa_rugosa Rorug02G0168700 Rorug02G0168800 Rorug02G0168800 Rorug02G0338300 Rorug06G0052100 Rorug06G0052200 Rorug06G0052800 Rorug06G0052900
rosa_samantha Rh2AG221000 Rh2AG387100 Rh2AG387200 Rh2AG547100 Rh2BG231100 Rh2BG504800 Rh2CG223400 Rh2CG374500 Rh2DG227200 Rh2DG410100 Rh2DG516200 Rh5CG251300 Rh6AG171200 Rh6AG171700 Rh6BG175700 Rh6BG176100 Rh6CG170500 Rh6CG171200 Rh6CG216400 Rh6DG162700 Rh6DG163000
rosa_wichuraiana Rw2G017050 Rw6G014700 Rw6G014740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 257
AcoI YGGCCR 1 cut(s) 254
AfiI CCNNNNNNNGG 1 cut(s) 225
AgeI ACCGGT 1 cut(s) 246
AgsI TTSAA 2 cut(s) 58, 138
AjnI CCWGG 1 cut(s) 31
Alw26I GTCTC 2 cut(s) 76, 237
AoxI GGCC 2 cut(s) 216, 254
ApeKI GCWGC 1 cut(s) 86
AsiGI ACCGGT 1 cut(s) 246
AspA2I CCTAGG 1 cut(s) 287
AspS9I GGNCC 1 cut(s) 216
AsuHPI GGTGA 1 cut(s) 290
AvrII CCTAGG 1 cut(s) 287
BbvI GCAGC 1 cut(s) 73
BccI CCATC 2 cut(s) 227, 259
BciT130I CCWGG 1 cut(s) 33
BcoDI GTCTC 2 cut(s) 76, 237
BfaI CTAG 3 cut(s) 65, 179, 288
BfmI CTRYAG 1 cut(s) 87
BisI GCNGC 2 cut(s) 87, 257
BlnI CCTAGG 1 cut(s) 287
BlsI GCNGC 2 cut(s) 88, 258
Bme1390I CCNGG 1 cut(s) 33
BmgT120I GGNCC 1 cut(s) 216
BmrFI CCNGG 1 cut(s) 33
BmsI GCATC 2 cut(s) 37, 153
BoxI GACNNNNGTC 1 cut(s) 249
Bpu10I CCTNAGC 1 cut(s) 233
BsaI GGTCTC 1 cut(s) 237
BsaJI CCNNGG 1 cut(s) 287
BsaWI WCCGGW 1 cut(s) 246
Bsc4I CCNNNNNNNGG 1 cut(s) 225
Bse118I RCCGGY 1 cut(s) 246
BseBI CCWGG 1 cut(s) 33
BseDI CCNNGG 1 cut(s) 287
BseGI GGATG 2 cut(s) 16, 168
BseLI CCNNNNNNNGG 1 cut(s) 225
BseX3I CGGCCG 1 cut(s) 254
BseXI GCAGC 1 cut(s) 73
Bsh1285I CGRYCG 1 cut(s) 257
BshFI GGCC 2 cut(s) 218, 256
BshTI ACCGGT 1 cut(s) 246
BsiEI CGRYCG 1 cut(s) 257
BsiSI CCGG 1 cut(s) 247
BslI CCNNNNNNNGG 1 cut(s) 225
BsmAI GTCTC 2 cut(s) 76, 237
BsmI GAATGC 1 cut(s) 64
BsnI GGCC 2 cut(s) 218, 256
Bso31I GGTCTC 1 cut(s) 237
BspACI CCGC 1 cut(s) 257
BspANI GGCC 2 cut(s) 218, 256
BspHI TCATGA 1 cut(s) 306
BspMAI CTGCAG 1 cut(s) 91
BspTNI GGTCTC 1 cut(s) 237
BsrFI RCCGGY 1 cut(s) 246
BssAI RCCGGY 1 cut(s) 246
BssECI CCNNGG 1 cut(s) 287
BssT1I CCWWGG 1 cut(s) 287
Bst2UI CCWGG 1 cut(s) 33
Bst4CI ACNGT 1 cut(s) 118
BstDEI CTNAG 2 cut(s) 110, 233
BstF5I GGATG 2 cut(s) 16, 168
BstMAI GTCTC 2 cut(s) 76, 237
BstMCI CGRYCG 1 cut(s) 257
BstNI CCWGG 1 cut(s) 33
BstPAI GACNNNNGTC 1 cut(s) 249
BstSCI CCNGG 1 cut(s) 31
BstSFI CTRYAG 1 cut(s) 87
BstV1I GCAGC 1 cut(s) 73
BstZI CGGCCG 1 cut(s) 254
BsuRI GGCC 2 cut(s) 218, 256
BtsCI GGATG 2 cut(s) 16, 168
CciI TCATGA 1 cut(s) 306
Cfr10I RCCGGY 1 cut(s) 246
Cfr13I GGNCC 1 cut(s) 216
CspAI ACCGGT 1 cut(s) 246
CviAII CATG 4 cut(s) 103, 144, 157, 307
CviJI RGCY 5 cut(s) 178, 218, 232, 256, 286
CviKI_1 RGCY 5 cut(s) 178, 218, 232, 256, 286
DdeI CTNAG 2 cut(s) 110, 233
EaeI YGGCCR 1 cut(s) 254
EagI CGGCCG 1 cut(s) 254
EclXI CGGCCG 1 cut(s) 254
Eco130I CCWWGG 1 cut(s) 287
Eco31I GGTCTC 1 cut(s) 237
Eco52I CGGCCG 1 cut(s) 254
EcoRII CCWGG 1 cut(s) 31
EcoT14I CCWWGG 1 cut(s) 287
ErhI CCWWGG 1 cut(s) 287
FaeI CATG 4 cut(s) 106, 147, 160, 310
FaiI YATR 6 cut(s) 104, 145, 150, 158, 197, 308
FatI CATG 4 cut(s) 102, 143, 156, 306
Fnu4HI GCNGC 2 cut(s) 87, 257
FokI GGATG 2 cut(s) 3, 175
Fsp4HI GCNGC 2 cut(s) 87, 257
FspBI CTAG 3 cut(s) 65, 179, 288
GluI GCNGC 2 cut(s) 87, 257
HaeIII GGCC 2 cut(s) 218, 256
HapII CCGG 1 cut(s) 247
Hin1II CATG 4 cut(s) 106, 147, 160, 310
HinfI GANTC 2 cut(s) 182, 303
HpaII CCGG 1 cut(s) 247
HphI GGTGA 1 cut(s) 290
Hpy188III TCNNGA 3 cut(s) 44, 281, 307
HpyCH4III ACNGT 1 cut(s) 118
HpyCH4V TGCA 5 cut(s) 38, 89, 102, 152, 166
HpyF3I CTNAG 2 cut(s) 110, 233
Hsp92II CATG 4 cut(s) 106, 147, 160, 310
LpnPI CCDG 6 cut(s) 18, 45, 57, 60, 75, 260
Lsp1109I GCAGC 1 cut(s) 73
LweI GCATC 2 cut(s) 37, 153
MaeI CTAG 3 cut(s) 65, 179, 288
MaeIII GTNAC 2 cut(s) 25, 296
MmeI TCCRAC 2 cut(s) 109, 191
MnlI CCTC 6 cut(s) 90, 125, 167, 207, 231, 269
MslI CAYNNNNRTG 1 cut(s) 161
MspI CCGG 1 cut(s) 247
MspR9I CCNGG 1 cut(s) 33
Mva1269I GAATGC 1 cut(s) 64
MvaI CCWGG 1 cut(s) 33
NlaIII CATG 4 cut(s) 106, 147, 160, 310
NmuCI GTSAC 2 cut(s) 25, 296
PagI TCATGA 1 cut(s) 306
PctI GAATGC 1 cut(s) 64
PfeI GAWTC 2 cut(s) 182, 303
PinAI ACCGGT 1 cut(s) 246
PkrI GCNGC 2 cut(s) 88, 258
PshAI GACNNNNGTC 1 cut(s) 249
Psp6I CCWGG 1 cut(s) 31
PspGI CCWGG 1 cut(s) 31
PspPI GGNCC 1 cut(s) 216
PstI CTGCAG 1 cut(s) 91
RseI CAYNNNNRTG 1 cut(s) 161
SatI GCNGC 2 cut(s) 87, 257
Sau96I GGNCC 1 cut(s) 216
ScrFI CCNGG 1 cut(s) 33
SetI ASST 3 cut(s) 101, 136, 280
SfaNI GCATC 2 cut(s) 37, 153
SfcI CTRYAG 1 cut(s) 87
SmiMI CAYNNNNRTG 1 cut(s) 161
SsiI CCGC 1 cut(s) 257
SspMI CTAG 3 cut(s) 65, 179, 288
StyD4I CCNGG 1 cut(s) 31
StyI CCWWGG 1 cut(s) 287
TaaI ACNGT 1 cut(s) 118
TauI GCSGC 1 cut(s) 259
TfiI GAWTC 2 cut(s) 182, 303
TseFI GTSAC 2 cut(s) 25, 296
TseI GCWGC 1 cut(s) 86
Tsp45I GTSAC 2 cut(s) 25, 296
TspDTI ATGAA 1 cut(s) 295
XmaJI CCTAGG 1 cut(s) 287
XspI CTAG 3 cut(s) 65, 179, 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.