Aldehyde dehydrogenase family
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Aldedh | PF00171 | 227 - 654 | 2.9e-127 | Aldehyde dehydrogenase family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 519, 1779 |
| AarI | CACCTGC | 1 cut(s) | 1322 |
| Acc36I | ACCTGC | 2 cut(s) | 1322, 1612 |
| AccI | GTMKAC | 1 cut(s) | 1596 |
| AclWI | GGATC | 6 cut(s) | 76, 87, 271, 1172, 1185, 1588 |
| AcoI | YGGCCR | 2 cut(s) | 1359, 1995 |
| AcsI | RAATTY | 2 cut(s) | 459, 1913 |
| AcvI | CACGTG | 1 cut(s) | 956 |
| AdeI | CACNNNGTG | 1 cut(s) | 1067 |
| AfaI | GTAC | 3 cut(s) | 324, 750, 823 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 65, 1357 |
| AflIII | ACRYGT | 2 cut(s) | 100, 1139 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 279 |
| AjnI | CCWGG | 3 cut(s) | 64, 1180, 1938 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1776, 1808 |
| AluBI | AGCT | 8 cut(s) | 293, 535, 779, 868, 1044, 1304, 1877, 1990 |
| AluI | AGCT | 8 cut(s) | 293, 535, 779, 868, 1044, 1304, 1877, 1990 |
| Alw21I | GWGCWC | 2 cut(s) | 1490, 1992 |
| Alw26I | GTCTC | 2 cut(s) | 873, 955 |
| Alw44I | GTGCAC | 1 cut(s) | 1486 |
| AlwI | GGATC | 6 cut(s) | 76, 87, 271, 1172, 1185, 1588 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 440 |
| Ama87I | CYCGRG | 2 cut(s) | 649, 1350 |
| AoxI | GGCC | 4 cut(s) | 1359, 1795, 1936, 1995 |
| ApaLI | GTGCAC | 1 cut(s) | 1486 |
| ApeKI | GCWGC | 6 cut(s) | 637, 779, 1328, 1457, 1472, 1904 |
| ApoI | RAATTY | 2 cut(s) | 459, 1913 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 93 |
| AspLEI | GCGC | 1 cut(s) | 642 |
| AspS9I | GGNCC | 5 cut(s) | 10, 1604, 1736, 1796, 1936 |
| AsuC2I | CCSGG | 2 cut(s) | 1710, 1994 |
| AsuHPI | GGTGA | 1 cut(s) | 320 |
| AvaI | CYCGRG | 2 cut(s) | 649, 1350 |
| AvaII | GGWCC | 3 cut(s) | 10, 1604, 1736 |
| BaeGI | GKGCMC | 1 cut(s) | 1490 |
| BamHI | GGATCC | 1 cut(s) | 1177 |
| BanII | GRGCYC | 1 cut(s) | 1992 |
| BbrPI | CACGTG | 1 cut(s) | 956 |
| BbsI | GAAGAC | 1 cut(s) | 1542 |
| Bbv12I | GWGCWC | 2 cut(s) | 1490, 1992 |
| BbvI | GCAGC | 6 cut(s) | 649, 766, 1340, 1444, 1459, 1891 |
| BciT130I | CCWGG | 3 cut(s) | 66, 1182, 1940 |
| BcnI | CCSGG | 2 cut(s) | 1710, 1994 |
| BcoDI | GTCTC | 2 cut(s) | 873, 955 |
| BfaI | CTAG | 2 cut(s) | 962, 1451 |
| BfmI | CTRYAG | 6 cut(s) | 232, 780, 998, 1045, 1131, 1473 |
| BfuAI | ACCTGC | 2 cut(s) | 1322, 1612 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1944 |
| BglII | AGATCT | 1 cut(s) | 490 |
| BisI | GCNGC | 6 cut(s) | 638, 780, 1329, 1458, 1473, 1905 |
| BlsI | GCNGC | 6 cut(s) | 639, 781, 1330, 1459, 1474, 1906 |
| Bme1390I | CCNGG | 5 cut(s) | 66, 1182, 1710, 1940, 1994 |
| Bme18I | GGWCC | 3 cut(s) | 10, 1604, 1736 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 279 |
| BmeT110I | CYCGRG | 2 cut(s) | 649, 1350 |
| BmgT120I | GGNCC | 5 cut(s) | 10, 1604, 1736, 1796, 1936 |
| BmiI | GGNNCC | 5 cut(s) | 343, 1059, 1179, 1707, 1738 |
| BmrFI | CCNGG | 5 cut(s) | 66, 1182, 1710, 1940, 1994 |
| BmrI | ACTGGG | 1 cut(s) | 1793 |
| BmsI | GCATC | 9 cut(s) | 39, 925, 1185, 1196, 1264, 1364, 1411, 1564, 1825 |
| BmuI | ACTGGG | 1 cut(s) | 1793 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1602 |
| BpiI | GAAGAC | 1 cut(s) | 1542 |
| BpuEI | CTTGAG | 3 cut(s) | 35, 729, 1550 |
| BpuMI | CCSGG | 2 cut(s) | 1710, 1994 |
| BsaAI | YACGTR | 1 cut(s) | 956 |
| BsaJI | CCNNGG | 3 cut(s) | 175, 541, 1362 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 65, 1357 |
| Bse118I | RCCGGY | 1 cut(s) | 2007 |
| Bse1I | ACTGG | 3 cut(s) | 1607, 1683, 1799 |
| Bse3DI | GCAATG | 3 cut(s) | 1218, 1876, 1970 |
| BseBI | CCWGG | 3 cut(s) | 66, 1182, 1940 |
| BseDI | CCNNGG | 3 cut(s) | 175, 541, 1362 |
| BseGI | GGATG | 4 cut(s) | 12, 379, 940, 1125 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 65, 1357 |
| BseMI | GCAATG | 3 cut(s) | 1218, 1876, 1970 |
| BseMII | CTCAG | 2 cut(s) | 1914, 1977 |
| BseNI | ACTGG | 3 cut(s) | 1607, 1683, 1799 |
| BseRI | GAGGAG | 2 cut(s) | 204, 782 |
| BseSI | GKGCMC | 1 cut(s) | 1490 |
| BseXI | GCAGC | 6 cut(s) | 649, 766, 1340, 1444, 1459, 1891 |
| BseYI | CCCAGC | 1 cut(s) | 1076 |
| BshFI | GGCC | 4 cut(s) | 1361, 1797, 1938, 1997 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1490, 1992 |
| BsiHKCI | CYCGRG | 2 cut(s) | 649, 1350 |
| BsiSI | CCGG | 4 cut(s) | 1578, 1710, 1994, 2008 |
| BslFI | GGGAC | 2 cut(s) | 122, 1722 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 65, 1357 |
| BsmAI | GTCTC | 2 cut(s) | 873, 955 |
| BsmFI | GGGAC | 2 cut(s) | 122, 1722 |
| BsmI | GAATGC | 1 cut(s) | 1450 |
| BsnI | GGCC | 4 cut(s) | 1361, 1797, 1938, 1997 |
| BsoBI | CYCGRG | 2 cut(s) | 649, 1350 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1490, 1992 |
| Bsp1407I | TGTACA | 1 cut(s) | 821 |
| Bsp143I | GATC | 6 cut(s) | 68, 79, 263, 490, 1177, 1580 |
| BspANI | GGCC | 4 cut(s) | 1361, 1797, 1938, 1997 |
| BspCNI | CTCAG | 2 cut(s) | 1915, 1976 |
| BspLI | GGNNCC | 5 cut(s) | 343, 1059, 1179, 1707, 1738 |
| BspMAI | CTGCAG | 4 cut(s) | 784, 1002, 1135, 1477 |
| BspMI | ACCTGC | 2 cut(s) | 1322, 1612 |
| BspPI | GGATC | 6 cut(s) | 76, 87, 271, 1172, 1185, 1588 |
| BsrDI | GCAATG | 3 cut(s) | 1218, 1876, 1970 |
| BsrFI | RCCGGY | 1 cut(s) | 2007 |
| BsrGI | TGTACA | 1 cut(s) | 821 |
| BsrI | ACTGG | 3 cut(s) | 1607, 1683, 1799 |
| BssAI | RCCGGY | 1 cut(s) | 2007 |
| BssECI | CCNNGG | 3 cut(s) | 175, 541, 1362 |
| BssMI | GATC | 6 cut(s) | 68, 79, 263, 490, 1177, 1580 |
| BssT1I | CCWWGG | 3 cut(s) | 175, 541, 1362 |
| Bst2UI | CCWGG | 3 cut(s) | 66, 1182, 1940 |
| Bst4CI | ACNGT | 4 cut(s) | 203, 331, 693, 1504 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 800, 1334 |
| BstAUI | TGTACA | 1 cut(s) | 821 |
| BstBAI | YACGTR | 1 cut(s) | 956 |
| BstC8I | GCNNGC | 7 cut(s) | 1200, 1222, 1226, 1426, 1462, 1554, 1619 |
| BstDEI | CTNAG | 3 cut(s) | 153, 1923, 1963 |
| BstF5I | GGATG | 4 cut(s) | 12, 379, 940, 1125 |
| BstHHI | GCGC | 1 cut(s) | 642 |
| BstKTI | GATC | 6 cut(s) | 71, 82, 266, 493, 1180, 1583 |
| BstMAI | GTCTC | 2 cut(s) | 873, 955 |
| BstMBI | GATC | 6 cut(s) | 68, 79, 263, 490, 1177, 1580 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 800, 1208, 1217, 1334, 1454, 1944 |
| BstNI | CCWGG | 3 cut(s) | 66, 1182, 1940 |
| BstNSI | RCATGY | 4 cut(s) | 104, 515, 980, 1143 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1602 |
| BstSCI | CCNGG | 5 cut(s) | 64, 1180, 1708, 1938, 1992 |
| BstSFI | CTRYAG | 6 cut(s) | 232, 780, 998, 1045, 1131, 1473 |
| BstSLI | GKGCMC | 1 cut(s) | 1490 |
| BstV1I | GCAGC | 6 cut(s) | 649, 766, 1340, 1444, 1459, 1891 |
| BstV2I | GAAGAC | 1 cut(s) | 1542 |
| BstX2I | RGATCY | 4 cut(s) | 68, 263, 490, 1177 |
| BstYI | RGATCY | 4 cut(s) | 68, 263, 490, 1177 |
| BsuRI | GGCC | 4 cut(s) | 1361, 1797, 1938, 1997 |
| BtgZI | GCGATG | 1 cut(s) | 832 |
| BtsCI | GGATG | 4 cut(s) | 12, 379, 940, 1125 |
| BtsI | GCAGTG | 1 cut(s) | 1140 |
| BtsIMutI | CAGTG | 2 cut(s) | 1140, 1614 |
| BveI | ACCTGC | 2 cut(s) | 1322, 1612 |
| Cac8I | GCNNGC | 7 cut(s) | 1200, 1222, 1226, 1426, 1462, 1554, 1619 |
| CaiI | CAGNNNCTG | 1 cut(s) | 440 |
| CfoI | GCGC | 1 cut(s) | 642 |
| Cfr10I | RCCGGY | 1 cut(s) | 2007 |
| Cfr13I | GGNCC | 5 cut(s) | 10, 1604, 1736, 1796, 1936 |
| CseI | GACGC | 1 cut(s) | 1442 |
| Csp6I | GTAC | 3 cut(s) | 323, 749, 822 |
| CviQI | GTAC | 3 cut(s) | 323, 749, 822 |
| DdeI | CTNAG | 3 cut(s) | 153, 1923, 1963 |
| DpnI | GATC | 6 cut(s) | 70, 81, 265, 492, 1179, 1582 |
| DpnII | GATC | 6 cut(s) | 68, 79, 263, 490, 1177, 1580 |
| DraI | TTTAAA | 2 cut(s) | 447, 717 |
| DraIII | CACNNNGTG | 1 cut(s) | 1067 |
| DriI | GACNNNNNGTC | 1 cut(s) | 279 |
| EaeI | YGGCCR | 2 cut(s) | 1359, 1995 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 279 |
| Ecl136II | GAGCTC | 1 cut(s) | 1990 |
| Eco130I | CCWWGG | 3 cut(s) | 175, 541, 1362 |
| Eco24I | GRGCYC | 1 cut(s) | 1992 |
| Eco47I | GGWCC | 3 cut(s) | 10, 1604, 1736 |
| Eco53kI | GAGCTC | 1 cut(s) | 1990 |
| Eco72I | CACGTG | 1 cut(s) | 956 |
| Eco88I | CYCGRG | 2 cut(s) | 649, 1350 |
| EcoICRI | GAGCTC | 1 cut(s) | 1990 |
| EcoRII | CCWGG | 3 cut(s) | 64, 1180, 1938 |
| EcoT14I | CCWWGG | 3 cut(s) | 175, 541, 1362 |
| EcoT22I | ATGCAT | 1 cut(s) | 940 |
| EcoT38I | GRGCYC | 1 cut(s) | 1992 |
| ErhI | CCWWGG | 3 cut(s) | 175, 541, 1362 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 519, 551, 1527, 1559 |
| FaqI | GGGAC | 2 cut(s) | 122, 1722 |
| FauNDI | CATATG | 1 cut(s) | 940 |
| FblI | GTMKAC | 1 cut(s) | 1596 |
| Fnu4HI | GCNGC | 6 cut(s) | 638, 780, 1329, 1458, 1473, 1905 |
| FokI | GGATG | 4 cut(s) | 19, 366, 947, 1132 |
| FriOI | GRGCYC | 1 cut(s) | 1992 |
| Fsp4HI | GCNGC | 6 cut(s) | 638, 780, 1329, 1458, 1473, 1905 |
| FspBI | CTAG | 2 cut(s) | 962, 1451 |
| GlaI | GCGC | 1 cut(s) | 641 |
| GluI | GCNGC | 6 cut(s) | 638, 780, 1329, 1458, 1473, 1905 |
| GsaI | CCCAGC | 1 cut(s) | 1080 |
| HaeIII | GGCC | 4 cut(s) | 1361, 1797, 1938, 1997 |
| HapII | CCGG | 4 cut(s) | 1578, 1710, 1994, 2008 |
| HgaI | GACGC | 1 cut(s) | 1442 |
| HhaI | GCGC | 1 cut(s) | 642 |
| Hin6I | GCGC | 1 cut(s) | 640 |
| HinP1I | GCGC | 1 cut(s) | 640 |
| HincII | GTYRAC | 2 cut(s) | 501, 1852 |
| HindII | GTYRAC | 2 cut(s) | 501, 1852 |
| HindIII | AAGCTT | 1 cut(s) | 533 |
| HinfI | GANTC | 6 cut(s) | 227, 437, 577, 686, 1108, 1648 |
| HpaII | CCGG | 4 cut(s) | 1578, 1710, 1994, 2008 |
| HphI | GGTGA | 1 cut(s) | 320 |
| Hpy188I | TCNGA | 4 cut(s) | 376, 507, 1171, 1443 |
| Hpy188III | TCNNGA | 4 cut(s) | 83, 488, 1350, 1918 |
| Hpy99I | CGWCG | 1 cut(s) | 396 |
| HpyAV | CCTTC | 3 cut(s) | 358, 591, 925 |
| HpyCH4III | ACNGT | 4 cut(s) | 203, 331, 693, 1504 |
| HpyCH4IV | ACGT | 3 cut(s) | 799, 955, 1372 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 800, 1208, 1217, 1334, 1454, 1944 |
| HpyF3I | CTNAG | 3 cut(s) | 153, 1923, 1963 |
| HpySE526I | ACGT | 3 cut(s) | 799, 955, 1372 |
| HspAI | GCGC | 1 cut(s) | 640 |
| Kzo9I | GATC | 6 cut(s) | 68, 79, 263, 490, 1177, 1580 |
| LmnI | GCTCC | 3 cut(s) | 1057, 1874, 1995 |
| Lsp1109I | GCAGC | 6 cut(s) | 649, 766, 1340, 1444, 1459, 1891 |
| LweI | GCATC | 9 cut(s) | 39, 925, 1185, 1196, 1264, 1364, 1411, 1564, 1825 |
| MaeI | CTAG | 2 cut(s) | 962, 1451 |
| MaeII | ACGT | 3 cut(s) | 799, 955, 1372 |
| MaeIII | GTNAC | 6 cut(s) | 83, 120, 136, 182, 1135, 1756 |
| MalI | GATC | 6 cut(s) | 70, 81, 265, 492, 1179, 1582 |
| MboI | GATC | 6 cut(s) | 68, 79, 263, 490, 1177, 1580 |
| MboII | GAAGA | 4 cut(s) | 1547, 1796, 1796, 1844 |
| MflI | RGATCY | 4 cut(s) | 68, 263, 490, 1177 |
| MhlI | GDGCHC | 2 cut(s) | 1490, 1992 |
| MluCI | AATT | 5 cut(s) | 277, 459, 1035, 1147, 1913 |
| MlyI | GAGTC | 2 cut(s) | 236, 586 |
| MmeI | TCCRAC | 3 cut(s) | 1297, 1369, 1495 |
| Mph1103I | ATGCAT | 1 cut(s) | 940 |
| MroXI | GAANNNNTTC | 1 cut(s) | 93 |
| MseI | TTAA | 9 cut(s) | 32, 423, 446, 473, 525, 716, 755, 1241, 1299 |
| MslI | CAYNNNNRTG | 2 cut(s) | 351, 981 |
| MspI | CCGG | 4 cut(s) | 1578, 1710, 1994, 2008 |
| MspR9I | CCNGG | 5 cut(s) | 66, 1182, 1710, 1940, 1994 |
| Mva1269I | GAATGC | 1 cut(s) | 1450 |
| MvaI | CCWGG | 3 cut(s) | 66, 1182, 1940 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 800, 1208, 1217, 1334, 1454, 1944 |
| NciI | CCSGG | 2 cut(s) | 1710, 1994 |
| NdeI | CATATG | 1 cut(s) | 940 |
| NdeII | GATC | 6 cut(s) | 68, 79, 263, 490, 1177, 1580 |
| NlaIV | GGNNCC | 5 cut(s) | 343, 1059, 1179, 1707, 1738 |
| NmeAIII | GCCGAG | 1 cut(s) | 247 |
| NmuCI | GTSAC | 5 cut(s) | 83, 120, 182, 1135, 1756 |
| NsiI | ATGCAT | 1 cut(s) | 940 |
| NspI | RCATGY | 4 cut(s) | 104, 515, 980, 1143 |
| PaqCI | CACCTGC | 1 cut(s) | 1322 |
| PciI | ACATGT | 2 cut(s) | 100, 1139 |
| PctI | GAATGC | 1 cut(s) | 1450 |
| PdmI | GAANNNNTTC | 1 cut(s) | 93 |
| PfeI | GAWTC | 4 cut(s) | 437, 686, 1108, 1648 |
| PfoI | TCCNGGA | 1 cut(s) | 1708 |
| PkrI | GCNGC | 6 cut(s) | 639, 781, 1330, 1459, 1474, 1906 |
| PleI | GAGTC | 2 cut(s) | 235, 585 |
| PmaCI | CACGTG | 1 cut(s) | 956 |
| PmlI | CACGTG | 1 cut(s) | 956 |
| PpsI | GAGTC | 2 cut(s) | 235, 585 |
| Ppu21I | YACGTR | 1 cut(s) | 956 |
| PscI | ACATGT | 2 cut(s) | 100, 1139 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1602 |
| PsiI | TTATAA | 2 cut(s) | 519, 1779 |
| Psp124BI | GAGCTC | 1 cut(s) | 1992 |
| Psp6I | CCWGG | 3 cut(s) | 64, 1180, 1938 |
| PspCI | CACGTG | 1 cut(s) | 956 |
| PspFI | CCCAGC | 1 cut(s) | 1076 |
| PspGI | CCWGG | 3 cut(s) | 64, 1180, 1938 |
| PspN4I | GGNNCC | 5 cut(s) | 343, 1059, 1179, 1707, 1738 |
| PspPI | GGNCC | 5 cut(s) | 10, 1604, 1736, 1796, 1936 |
| PstI | CTGCAG | 4 cut(s) | 784, 1002, 1135, 1477 |
| PstNI | CAGNNNCTG | 1 cut(s) | 440 |
| PsuI | RGATCY | 4 cut(s) | 68, 263, 490, 1177 |
| RsaI | GTAC | 3 cut(s) | 324, 750, 823 |
| RsaNI | GTAC | 3 cut(s) | 323, 749, 822 |
| RseI | CAYNNNNRTG | 2 cut(s) | 351, 981 |
| SacI | GAGCTC | 1 cut(s) | 1992 |
| SaqAI | TTAA | 9 cut(s) | 32, 423, 446, 473, 525, 716, 755, 1241, 1299 |
| SatI | GCNGC | 6 cut(s) | 638, 780, 1329, 1458, 1473, 1905 |
| Sau3AI | GATC | 6 cut(s) | 68, 79, 263, 490, 1177, 1580 |
| Sau96I | GGNCC | 5 cut(s) | 10, 1604, 1736, 1796, 1936 |
| SchI | GAGTC | 2 cut(s) | 236, 586 |
| ScrFI | CCNGG | 5 cut(s) | 66, 1182, 1710, 1940, 1994 |
| SduI | GDGCHC | 2 cut(s) | 1490, 1992 |
| SfaNI | GCATC | 9 cut(s) | 39, 925, 1185, 1196, 1264, 1364, 1411, 1564, 1825 |
| SfcI | CTRYAG | 6 cut(s) | 232, 780, 998, 1045, 1131, 1473 |
| SinI | GGWCC | 3 cut(s) | 10, 1604, 1736 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 351, 981 |
| SmlI | CTYRAG | 3 cut(s) | 14, 744, 1565 |
| SmoI | CTYRAG | 3 cut(s) | 14, 744, 1565 |
| Sse9I | AATT | 5 cut(s) | 277, 459, 1035, 1147, 1913 |
| SspI | AATATT | 1 cut(s) | 1246 |
| SspMI | CTAG | 2 cut(s) | 962, 1451 |
| SstI | GAGCTC | 1 cut(s) | 1992 |
| StyD4I | CCNGG | 5 cut(s) | 64, 1180, 1708, 1938, 1992 |
| StyI | CCWWGG | 3 cut(s) | 175, 541, 1362 |
| TaaI | ACNGT | 4 cut(s) | 203, 331, 693, 1504 |
| TaiI | ACGT | 3 cut(s) | 802, 958, 1375 |
| TaqI | TCGA | 2 cut(s) | 621, 972 |
| TasI | AATT | 5 cut(s) | 277, 459, 1035, 1147, 1913 |
| TatI | WGTACW | 1 cut(s) | 821 |
| TfiI | GAWTC | 4 cut(s) | 437, 686, 1108, 1648 |
| Tru1I | TTAA | 9 cut(s) | 32, 423, 446, 473, 525, 716, 755, 1241, 1299 |
| Tru9I | TTAA | 9 cut(s) | 32, 423, 446, 473, 525, 716, 755, 1241, 1299 |
| TscAI | CASTG | 2 cut(s) | 1140, 1614 |
| TseFI | GTSAC | 5 cut(s) | 83, 120, 182, 1135, 1756 |
| TseI | GCWGC | 6 cut(s) | 637, 779, 1328, 1457, 1472, 1904 |
| Tsp45I | GTSAC | 5 cut(s) | 83, 120, 182, 1135, 1756 |
| TspDTI | ATGAA | 5 cut(s) | 369, 1140, 1241, 1278, 1720 |
| TspRI | CASTG | 2 cut(s) | 1140, 1614 |
| VneI | GTGCAC | 1 cut(s) | 1486 |
| VpaK11BI | GGWCC | 3 cut(s) | 10, 1604, 1736 |
| XapI | RAATTY | 2 cut(s) | 459, 1913 |
| XceI | RCATGY | 4 cut(s) | 104, 515, 980, 1143 |
| XmiI | GTMKAC | 1 cut(s) | 1596 |
| XmnI | GAANNNNTTC | 1 cut(s) | 93 |
| XspI | CTAG | 2 cut(s) | 962, 1451 |
| Zsp2I | ATGCAT | 1 cut(s) | 940 |