Rroxscaffold_5G00350420

Aldehyde dehydrogenase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000503
Physical Location & Seq
Forward (+)
24382696 .. 24383570
875 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_5G00350420.1

Sequence Viewer

Length: 447 bp
ATGAGTTTGATCACCAACTCGAACTCGTTTGAGGCAGTAAACAAAGTTGATGAGTCCCGTAGTGAACGTAACAAAAGGAGAAAAGCAGGATCTCGGCCGACAAATTGTCCTTTTGAAGCTGCAGTATTTTCAGCAAAACGTGCCTTTCCATTGTGGCGATGTACACCTATTACTACTCGTCAGCGTATTATGTTCAAGTTCCAAGAGCTTATACGCAGAGACATTGATAAGATTGCTATGACCATTACAAGTGAACATGGCAAAGCATTGAAGGATGCATATGATGATGTCTCACGTGGGCTAGAGGTGGTCCAATATGCTTGTGGACTTGCAACTCGCAGATGGGAGATTTTATTTCCAATGTATCACATGGAATTGATAGCCACAACATTAGGGAGCCACTTGGTGTTTGTGCTGGGATTTGCCCATGTGATTTTCCAGCCATGA

Protein Analysis

148

Amino Acids

17.01

Weight (kDa)

9.66

Isoelectric Point (pI)

62.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldedh PF00171 38 - 114 1.3e-15 Aldehyde dehydrogenase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000503)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14170
fragaria_vesca FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_2g11390 FvH4_2g11390 FvH4_2g11390 FvH4_2g11390 FvH4_2g11410 FvH4_2g11410
malus_domestica MD09G1234200.v1.1 MD15G1309700.v1.1
prunus_persica Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.8G073100_v2.0.a1 Prupe.8G073100_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1
pyrus_communis pycom09g15250 pycom15g27380
rosa_chinensis RchiOBHm_Chr2g0110691 RchiOBHm_Chr2g0137621 RchiOBHm_Chr6g0270041 RchiOBHm_Chr6g0270061 RchiOBHm_Chr6g0270141
rosa_laevigata RLG00000013815 RLG00000013819 RLG00000017831 RLG00000019609
rosa_multiflora Rmu_co8442727.1_g000001 Rmu_sc0000389.1_g000042 Rmu_sc0000918.1_g000033 Rmu_sc0003043.1_g000019 Rmu_sc0004376.1_g000013
rosa_roxburghii Rroxscaffold_2G00133030 Rroxscaffold_5G00350410 Rroxscaffold_5G00350420 Rroxscaffold_5G00350430 Rroxscaffold_6G00398360 Rroxscaffold_7G00198140 Rroxscaffold_7G00198180
rosa_rugosa Rorug02G0168700 Rorug02G0168800 Rorug02G0168800 Rorug02G0338300 Rorug06G0052100 Rorug06G0052200 Rorug06G0052800 Rorug06G0052900
rosa_samantha Rh2AG221000 Rh2AG387100 Rh2AG387200 Rh2AG547100 Rh2BG231100 Rh2BG504800 Rh2CG223400 Rh2CG374500 Rh2DG227200 Rh2DG410100 Rh2DG516200 Rh5CG251300 Rh6AG171200 Rh6AG171700 Rh6BG175700 Rh6BG176100 Rh6CG170500 Rh6CG171200 Rh6CG216400 Rh6DG162700 Rh6DG163000
rosa_wichuraiana Rw2G017050 Rw6G014700 Rw6G014740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 97
AcoI YGGCCR 1 cut(s) 95
AcvI CACGTG 1 cut(s) 296
AdeI CACNNNGTG 1 cut(s) 406
AfaI GTAC 1 cut(s) 163
AgsI TTSAA 3 cut(s) 116, 196, 271
AhdI GACNNNNNGTC 1 cut(s) 105
AluBI AGCT 2 cut(s) 119, 208
AluI AGCT 2 cut(s) 119, 208
Alw26I GTCTC 2 cut(s) 213, 295
AlwI GGATC 1 cut(s) 97
AoxI GGCC 1 cut(s) 95
ApeKI GCWGC 1 cut(s) 119
AspS9I GGNCC 1 cut(s) 310
AsuHPI GGTGA 1 cut(s) 4
AvaII GGWCC 1 cut(s) 310
BbrPI CACGTG 1 cut(s) 296
BbvI GCAGC 1 cut(s) 106
BccI CCATC 1 cut(s) 336
BclI TGATCA 1 cut(s) 9
BcoDI GTCTC 2 cut(s) 213, 295
BfaI CTAG 1 cut(s) 302
BfmI CTRYAG 1 cut(s) 120
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
Bme18I GGWCC 1 cut(s) 310
BmeRI GACNNNNNGTC 1 cut(s) 105
BmgT120I GGNCC 1 cut(s) 310
BmiI GGNNCC 1 cut(s) 398
BmsI GCATC 1 cut(s) 265
BsaAI YACGTR 1 cut(s) 296
BseGI GGATG 1 cut(s) 280
BseX3I CGGCCG 1 cut(s) 95
BseXI GCAGC 1 cut(s) 106
BseYI CCCAGC 1 cut(s) 415
Bsh1285I CGRYCG 1 cut(s) 98
BshFI GGCC 1 cut(s) 97
BsiEI CGRYCG 1 cut(s) 98
BslFI GGGAC 1 cut(s) 40
BsmAI GTCTC 2 cut(s) 213, 295
BsmFI GGGAC 1 cut(s) 40
BsnI GGCC 1 cut(s) 97
Bsp1407I TGTACA 1 cut(s) 161
Bsp143I GATC 2 cut(s) 9, 89
BspANI GGCC 1 cut(s) 97
BspLI GGNNCC 1 cut(s) 398
BspMAI CTGCAG 1 cut(s) 124
BspPI GGATC 1 cut(s) 97
BsrGI TGTACA 1 cut(s) 161
BssMI GATC 2 cut(s) 9, 89
BstAPI GCANNNNNTGC 1 cut(s) 140
BstAUI TGTACA 1 cut(s) 161
BstBAI YACGTR 1 cut(s) 296
BstF5I GGATG 1 cut(s) 280
BstKTI GATC 2 cut(s) 12, 92
BstMAI GTCTC 2 cut(s) 213, 295
BstMBI GATC 2 cut(s) 9, 89
BstMCI CGRYCG 1 cut(s) 98
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstSFI CTRYAG 1 cut(s) 120
BstV1I GCAGC 1 cut(s) 106
BstX2I RGATCY 1 cut(s) 89
BstYI RGATCY 1 cut(s) 89
BstZI CGGCCG 1 cut(s) 95
BsuRI GGCC 1 cut(s) 97
BtgZI GCGATG 1 cut(s) 172
BtsCI GGATG 1 cut(s) 280
Cfr13I GGNCC 1 cut(s) 310
Csp6I GTAC 1 cut(s) 162
CviAII CATG 4 cut(s) 257, 370, 428, 444
CviJI RGCY 7 cut(s) 97, 119, 208, 301, 383, 399, 442
CviKI_1 RGCY 7 cut(s) 97, 119, 208, 301, 383, 399, 442
CviQI GTAC 1 cut(s) 162
DpnI GATC 2 cut(s) 11, 91
DpnII GATC 2 cut(s) 9, 89
DraIII CACNNNGTG 1 cut(s) 406
DriI GACNNNNNGTC 1 cut(s) 105
EaeI YGGCCR 1 cut(s) 95
EagI CGGCCG 1 cut(s) 95
Eam1105I GACNNNNNGTC 1 cut(s) 105
EclXI CGGCCG 1 cut(s) 95
Eco47I GGWCC 1 cut(s) 310
Eco52I CGGCCG 1 cut(s) 95
Eco72I CACGTG 1 cut(s) 296
EcoT22I ATGCAT 1 cut(s) 280
FaeI CATG 4 cut(s) 260, 373, 431, 447
FaqI GGGAC 1 cut(s) 40
FatI CATG 4 cut(s) 256, 369, 427, 443
FauNDI CATATG 1 cut(s) 280
FbaI TGATCA 1 cut(s) 9
Fnu4HI GCNGC 1 cut(s) 120
FokI GGATG 1 cut(s) 287
Fsp4HI GCNGC 1 cut(s) 120
FspBI CTAG 1 cut(s) 302
GluI GCNGC 1 cut(s) 120
GsaI CCCAGC 1 cut(s) 419
HaeIII GGCC 1 cut(s) 97
Hin1II CATG 4 cut(s) 260, 373, 431, 447
HinfI GANTC 1 cut(s) 53
HphI GGTGA 1 cut(s) 4
Hpy166II GTNNAC 5 cut(s) 40, 65, 164, 254, 326
Hpy8I GTNNAC 5 cut(s) 40, 65, 164, 254, 326
HpyAV CCTTC 1 cut(s) 265
HpyCH4IV ACGT 3 cut(s) 67, 139, 295
HpyCH4V TGCA 3 cut(s) 122, 278, 332
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpySE526I ACGT 3 cut(s) 67, 139, 295
Hsp92II CATG 4 cut(s) 260, 373, 431, 447
Ksp22I TGATCA 1 cut(s) 9
Kzo9I GATC 2 cut(s) 9, 89
LmnI GCTCC 1 cut(s) 396
LpnPI CCDG 2 cut(s) 72, 401
Lsp1109I GCAGC 1 cut(s) 106
LweI GCATC 1 cut(s) 265
MaeI CTAG 1 cut(s) 302
MaeII ACGT 3 cut(s) 67, 139, 295
MaeIII GTNAC 1 cut(s) 68
MalI GATC 2 cut(s) 11, 91
MboI GATC 2 cut(s) 9, 89
MflI RGATCY 1 cut(s) 89
MluCI AATT 2 cut(s) 103, 374
MlyI GAGTC 1 cut(s) 62
MnlI CCTC 2 cut(s) 25, 298
Mph1103I ATGCAT 1 cut(s) 280
MwoI GCNNNNNNNGC 1 cut(s) 140
NdeI CATATG 1 cut(s) 280
NdeII GATC 2 cut(s) 9, 89
NlaIII CATG 4 cut(s) 260, 373, 431, 447
NlaIV GGNNCC 1 cut(s) 398
NmeAIII GCCGAG 1 cut(s) 73
NsiI ATGCAT 1 cut(s) 280
PkrI GCNGC 1 cut(s) 121
PleI GAGTC 1 cut(s) 61
PmaCI CACGTG 1 cut(s) 296
PmlI CACGTG 1 cut(s) 296
PpsI GAGTC 1 cut(s) 61
Ppu21I YACGTR 1 cut(s) 296
PspCI CACGTG 1 cut(s) 296
PspFI CCCAGC 1 cut(s) 415
PspN4I GGNNCC 1 cut(s) 398
PspPI GGNCC 1 cut(s) 310
PstI CTGCAG 1 cut(s) 124
PsuI RGATCY 1 cut(s) 89
RsaI GTAC 1 cut(s) 163
RsaNI GTAC 1 cut(s) 162
SatI GCNGC 1 cut(s) 120
Sau3AI GATC 2 cut(s) 9, 89
Sau96I GGNCC 1 cut(s) 310
SchI GAGTC 1 cut(s) 62
SetI ASST 7 cut(s) 70, 121, 142, 169, 210, 298, 309
SfaNI GCATC 1 cut(s) 265
SfcI CTRYAG 1 cut(s) 120
SinI GGWCC 1 cut(s) 310
Sse9I AATT 2 cut(s) 103, 374
SspMI CTAG 1 cut(s) 302
TaiI ACGT 3 cut(s) 70, 142, 298
TaqI TCGA 1 cut(s) 20
TasI AATT 2 cut(s) 103, 374
TatI WGTACW 1 cut(s) 161
TseI GCWGC 1 cut(s) 119
VpaK11BI GGWCC 1 cut(s) 310
XcmI CCANNNNNNNNNTGG 1 cut(s) 320
XspI CTAG 1 cut(s) 302
Zsp2I ATGCAT 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.