Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000389.1

Orthogroup ID

OG0000503

Physical Location & Seq

Genomic Coordinates Forward (+)

192795 .. 208224

Gene Structure 15430 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000389.1_g000042.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3351 bp

atgttgcctcctccactgcctcagatcgtgtcggaactccccactatcaacatcacagcctcagctcgtgtcgccgactccgtctactcctcgatctgcggtgtgtttttgtgttggaggtggagttttgggtctctggtagtgcaaggtttcactgacctagtgggattttcaatcagattcttctccctgccatcaataatggaaactgaaagtcaaattgagcttactatacggaacaatatgcttcctccacaagctggaacatttcaagatcgtgaagatctcatccaatatgttcgtgattttggtgctagtcaaggatatgtggtgaccatcaagaagtcaaggaaagacaggagagtgattttaggttgtgataggggaggtgtttatcgtaataggcgtaaaatcgatgaaagcaaacgcaaaaggaaggcaaattcacgccttataaactgtccctttgaagccattgggaaaagggaagatgatttgtgggtactcacaataaagaatggggagcataatcatgaagcattaaaggacatgtcagagcatccttatagtcgtcgctttactgaggaagaggtcaggcaaatcaagcaaatgaccgaagctggtataaaaccacgtcaagttcttaaggctctcaagcaaatgaatcctgaactgcagtcaacaccaaggcatttgtataacctcaaagcaaagatccgtcaaggaactctatcagagaaaagtttcaagacatggagacctgacaggtccgctttggtgaatacaagttctgctcccagtggggggtcattgatgcaaagtaaccagccggttcctaatttcataggaggaaaattcgttgattcacaagggtgttcaatcattgaagtagtaaatcctgcaacacaagagattgtttctcatgttcctttaactacctatgaagagttcaaagctgcagttagttcagccaagcaagcttttccttcatggaagaacacacctattactacacgtcaaagaatcctgtttaagcttcaggagctcatccgcagagatattgataaacttgccatgaatatcaccttagagcagggtaagacgttgaagggtgctgagagtgatgtgctccgtggtgtagaggtggtcgaacatgcttgtgggatggcaactctacagatgggtgagtttgttcctaatgcatcttatggtattgatacatacagcattagggaaccacttggtgtttgtgccgggatatgccccttcaactttccctcaatgattccattatggatgttcccagttgcagttacatgtggcaatacatttgttcttaagccatgtgaaaaaaatccaggagtttcgatgatacttgcagcacttgctaaggaggctggtttgcccgatggtgtgttaaatatagtccatggcactcacgacattgttaattatatctgtgatgatgatgatataaaggctgtttcacttgttggctcgagtacagctggaatgcacatacatgcaaaggcagttgctaggggaaagcgtgttcagtccaatataggaggaaaaaatcatgccatcatcatgcctgatgctagcatggatgcaaccttgaatgctctggtcacggctggttttggtgctgcaggacagaggtgtatggctcttaatacagctgtttttgttggaaactcaataacatgggagcgtgaactagtggaacgtgccaaagccctgaaagtcaatgtgggaacagatcccagtgcagacgttggtccagttattaccaaagaggtgaaggattgcatatgcagattagtccagagcagtgtcgaaagcggtgctagactcgttcttgatgggagaaatgttatggttcgaggctatgagaatggaaattttgttggtcctactatcttatgtgatgttacaaccaatatggattgttttaaggaagaaatttttggaccggttcttctgtgcatgcaggctgccagcctagaagaagcgatcacaattataaacagaaacaggtgtgggcatggagcttccatattcacaacatctggcattgctgcaaggaagttccagaatgaagttgaggctgggctggttgggatcaatgttcctgttccggttccgttgccactgtcctcgtttaacggatctaaggcatcttttggcagcgatctgaatatctctggtaaggcaggagtgcaattttacacccagatcaaagcggttgcacaacagtggaaggatttacctagcttagaatcatcattagccttgcgtccatcatatgagacaaatatggcaagcagaggtgtctcttcttctttgccttcaacatctgagagagattcacctagccatagaatatcaggagccacaaactcagaatctgagagtgattcaccaagcgagttgccaagtcgtggagctccgttgtccctcccttccacatctgaggcagctcttccaacccaaggagcctcatctatgtctccaacagcatatagggattttactagtcagagcctgtcccttgtcctgccagcaacatccgagagagatctgtccggtgtggatatgtcactagccatgcctcgagcaacagaaagagatataccaaaacaaggtttgacattgacaacttcacaatcatcagagagaatgtatatgcctcaaacttctcattggatggaaacctcaagaccaacatctcaaaggactgaaaatatttcaccaagttctgagaggcgtcttgcctcaacatctcagaggaatgacaagaatggcaacacgtcactgtcatctcaaaggactggtacttctatggcattgacttccgagagcgtctatgcccctgcctctcatgacaatatggctccaatatcactccgaagtgatggtatgactggaacatctcacaggacggatcccactctacgtccaacctctgagagagcatacatgctgggagtaactcacctgaatgacaatatgggtcaaacatttcaaaggcccgacaccatgttttcaacatctgagaggatgtacatgcccgcaaaatctcatcagcatgaccatatgggttcaacatctcggagaactgatattcctatgcattcaacttctgagcggatgttcatgtccactcaaaggaatgaggagttggctgttgcttctcaacctgcctccgagagattatatttgtctccattagttccgagaaatgctggtacgcctcagaagatgtttccccaaaactctttaattttgagtgaggagtttccctcccaaggagcatcactgactttacccacatctcagaggatatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005507 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006950 GO:0006979 GO:0008150 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00280 ko00410 ko00562 ko00640 ko01100 ko01200 map00280 map00410 map00562 map00640 map01100 map01200

Pfam Domains

Protein Families

Aldedh

Protein Analysis

1116

Amino Acids

122.09

Weight (kDa)

8.56

Isoelectric Point (pI)

54.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000503)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14170
fragaria_vesca	FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_2g11390 FvH4_2g11390 FvH4_2g11390 FvH4_2g11390 FvH4_2g11410 FvH4_2g11410
malus_domestica	MD09G1234200.v1.1 MD15G1309700.v1.1
prunus_persica	Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.8G073100_v2.0.a1 Prupe.8G073100_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1
pyrus_communis	pycom09g15250 pycom15g27380
rosa_chinensis	RchiOBHm_Chr2g0110691 RchiOBHm_Chr2g0137621 RchiOBHm_Chr6g0270041 RchiOBHm_Chr6g0270061 RchiOBHm_Chr6g0270141
rosa_laevigata	RLG00000013815 RLG00000013819 RLG00000017831 RLG00000019609
rosa_multiflora	Rmu_co8442727.1_g000001 Rmu_sc0000389.1_g000042 Rmu_sc0000918.1_g000033 Rmu_sc0003043.1_g000019 Rmu_sc0004376.1_g000013
rosa_roxburghii	Rroxscaffold_2G00133030 Rroxscaffold_5G00350410 Rroxscaffold_5G00350420 Rroxscaffold_5G00350430 Rroxscaffold_6G00398360 Rroxscaffold_7G00198140 Rroxscaffold_7G00198180
rosa_rugosa	Rorug02G0168700 Rorug02G0168800 Rorug02G0168800 Rorug02G0338300 Rorug06G0052100 Rorug06G0052200 Rorug06G0052800 Rorug06G0052900
rosa_samantha	Rh2AG221000 Rh2AG387100 Rh2AG387200 Rh2AG547100 Rh2BG231100 Rh2BG504800 Rh2CG223400 Rh2CG374500 Rh2DG227200 Rh2DG410100 Rh2DG516200 Rh5CG251300 Rh6AG171200 Rh6AG171700 Rh6BG175700 Rh6BG176100 Rh6CG170500 Rh6CG171200 Rh6CG216400 Rh6DG162700 Rh6DG163000
rosa_wichuraiana	Rw2G017050 Rw6G014700 Rw6G014740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	455, 2027
Acc36I	ACCTGC	1 cut(s)	3211
AccB7I	CCANNNNNTGG	2 cut(s)	260, 2444
AccBSI	CCGCTC	1 cut(s)	3151
AccI	GTMKAC	1 cut(s)	84
AciI	CCGC	7 cut(s)	99, 771, 1051, 1845, 2246, 3075, 3151
AclWI	GGATC	6 cut(s)	709, 1757, 2132, 2179, 2942, 2955
AcsI	RAATTY	4 cut(s)	442, 854, 1903, 1965
AcuI	CTGAAG	1 cut(s)	1022
AcyI	GRCGYC	1 cut(s)	2770
AdeI	CACNNNGTG	1 cut(s)	1244
AfaI	GTAC	5 cut(s)	504, 1504, 2839, 3068, 3253
AfiI	CCNNNNNNNGG	8 cut(s)	260, 803, 804, 2444, 2495, 2645, 3171, 3311
AflII	CTTAAG	2 cut(s)	644, 1337
AflIII	ACRYGT	4 cut(s)	549, 1013, 1316, 2811
AgeI	ACCGGT	1 cut(s)	1975
AhlI	ACTAGT	2 cut(s)	1720, 2537
AjiI	CACGTC	3 cut(s)	635, 1016, 2814
AjnI	CCWGG	1 cut(s)	1357
AjuI	GAANNNNNNNTTGG	4 cut(s)	1953, 1985, 3167, 3199
AleI	CACNNNNGTG	2 cut(s)	871, 2257
AloI	GAACNNNNNNTCC	4 cut(s)	1536, 1568, 3112, 3144
Alw21I	GWGCWC	3 cut(s)	1047, 1131, 2452
Alw26I	GTCTC	6 cut(s)	138, 751, 2306, 2341, 2517, 3231
AlwI	GGATC	6 cut(s)	709, 1757, 2132, 2179, 2942, 2955
AlwNI	CAGNNNCTG	2 cut(s)	2411, 2548
Ama87I	CYCGRG	2 cut(s)	1498, 2616
AoxI	GGCC	1 cut(s)	3032
ApeKI	GCWGC	7 cut(s)	956, 1379, 1649, 1997, 2081, 2190, 2480
ApoI	RAATTY	4 cut(s)	442, 854, 1903, 1965
AsiGI	ACCGGT	1 cut(s)	1975
Asp700I	GAANNNNTTC	1 cut(s)	743
AspS9I	GGNCC	5 cut(s)	768, 1781, 1913, 1973, 3033
AsuC2I	CCSGG	1 cut(s)	1255
AsuHPI	GGTGA	9 cut(s)	343, 790, 1075, 1196, 1813, 2364, 2415, 2745, 2990
AsuNHI	GCTAGC	1 cut(s)	1601
AvaI	CYCGRG	2 cut(s)	1498, 2616
AvaII	GGWCC	4 cut(s)	768, 1781, 1913, 1973
BamHI	GGATCC	1 cut(s)	2947
BanII	GRGCYC	2 cut(s)	1047, 2452
BauI	CACGAG	1 cut(s)	66
Bbv12I	GWGCWC	3 cut(s)	1047, 1131, 2452
BbvCI	CCTCAGC	1 cut(s)	61
BbvI	GCAGC	7 cut(s)	943, 1391, 1636, 1984, 2068, 2202, 2492
BceAI	ACGGC	1 cut(s)	1650
BcgI	CGANNNNNNTGC	2 cut(s)	1829, 1863
BciT130I	CCWGG	1 cut(s)	1359
BcnI	CCSGG	1 cut(s)	1255
BcoDI	GTCTC	6 cut(s)	138, 751, 2306, 2341, 2517, 3231
BcuI	ACTAGT	2 cut(s)	1720, 2537
BfmI	CTRYAG	4 cut(s)	674, 957, 1175, 1650
BfrI	CTTAAG	2 cut(s)	644, 1337
BfuAI	ACCTGC	1 cut(s)	3211
BglII	AGATCT	2 cut(s)	283, 2581
BisI	GCNGC	7 cut(s)	957, 1380, 1650, 1998, 2082, 2191, 2481
BlsI	GCNGC	7 cut(s)	958, 1381, 1651, 1999, 2083, 2192, 2482
Bme1390I	CCNGG	2 cut(s)	1255, 1359
Bme18I	GGWCC	4 cut(s)	768, 1781, 1913, 1973
BmeT110I	CYCGRG	2 cut(s)	1498, 2616
BmgBI	CACGTC	3 cut(s)	635, 1016, 2814
BmgT120I	GGNCC	5 cut(s)	768, 1781, 1913, 1973, 3033
BmiI	GGNNCC	7 cut(s)	834, 1236, 2145, 2395, 2500, 2898, 2949
BmrFI	CCNGG	2 cut(s)	1255, 1359
BmrI	ACTGGG	3 cut(s)	792, 1298, 1761
BmsI	GCATC	7 cut(s)	568, 804, 1211, 1588, 1600, 2189, 3326
BmtI	GCTAGC	1 cut(s)	1605
BmuI	ACTGGG	3 cut(s)	792, 1298, 1761
BoxI	GACNNNNGTC	1 cut(s)	1779
BplI	GAGNNNNNCTC	2 cut(s)	3290, 3322
Bpu10I	CCTNAGC	2 cut(s)	61, 1389
BpuEI	CTTGAG	2 cut(s)	638, 2704
BpuMI	CCSGG	1 cut(s)	1255
Bsa29I	ATCGAT	1 cut(s)	414
BsaHI	GRCGYC	1 cut(s)	2770
BsaI	GGTCTC	2 cut(s)	138, 751
BsaJI	CCNNGG	5 cut(s)	686, 1132, 1429, 2494, 3310
BsaWI	WCCGGW	3 cut(s)	1975, 2140, 2588
BsaXI	ACNNNNNCTCC	2 cut(s)	109, 139
Bsc4I	CCNNNNNNNGG	8 cut(s)	260, 803, 804, 2444, 2495, 2645, 3171, 3311
Bse118I	RCCGGY	2 cut(s)	829, 1975
Bse1I	ACTGG	6 cut(s)	798, 1304, 1767, 1784, 2839, 2932
Bse3DI	GCAATG	1 cut(s)	2076
BseBI	CCWGG	1 cut(s)	1359
BseCI	ATCGAT	1 cut(s)	414
BseDI	CCNNGG	5 cut(s)	686, 1132, 1429, 2494, 3310
BseLI	CCNNNNNNNGG	8 cut(s)	260, 803, 804, 2444, 2495, 2645, 3171, 3311
BseMI	GCAATG	1 cut(s)	2076
BseNI	ACTGG	6 cut(s)	798, 1304, 1767, 1784, 2839, 2932
BseRI	GAGGAG	3 cut(s)	79, 3194, 3311
BseXI	GCAGC	7 cut(s)	943, 1391, 1636, 1984, 2068, 2202, 2492
BseYI	CCCAGC	2 cut(s)	2111, 2986
BsgI	GTGCAG	1 cut(s)	1791
BshFI	GGCC	1 cut(s)	3034
BshTI	ACCGGT	1 cut(s)	1975
BshVI	ATCGAT	1 cut(s)	414
BsiHKAI	GWGCWC	3 cut(s)	1047, 1131, 2452
BsiHKCI	CYCGRG	2 cut(s)	1498, 2616
BsiSI	CCGG	5 cut(s)	830, 1254, 1976, 2141, 2589
BslFI	GGGAC	3 cut(s)	447, 2443, 2536
BslI	CCNNNNNNNGG	8 cut(s)	260, 803, 804, 2444, 2495, 2645, 3171, 3311
BsmAI	GTCTC	6 cut(s)	138, 751, 2306, 2341, 2517, 3231
BsmFI	GGGAC	3 cut(s)	447, 2443, 2536
BsmI	GAATGC	3 cut(s)	1518, 1627, 3136
BsnI	GGCC	1 cut(s)	3034
Bso31I	GGTCTC	2 cut(s)	138, 751
BsoBI	CYCGRG	2 cut(s)	1498, 2616
Bsp1286I	GDGCHC	3 cut(s)	1047, 1131, 2452
Bsp1407I	TGTACA	1 cut(s)	3066
Bsp19I	CCATGG	1 cut(s)	1429
BspACI	CCGC	7 cut(s)	99, 771, 1051, 1845, 2246, 3075, 3151
BspANI	GGCC	1 cut(s)	3034
BspDI	ATCGAT	1 cut(s)	414
BspHI	TCATGA	2 cut(s)	532, 2884
BspLI	GGNNCC	7 cut(s)	834, 1236, 2145, 2395, 2500, 2898, 2949
BspMAI	CTGCAG	3 cut(s)	678, 961, 1654
BspMI	ACCTGC	1 cut(s)	3211
BspOI	GCTAGC	1 cut(s)	1605
BspPI	GGATC	6 cut(s)	709, 1757, 2132, 2179, 2942, 2955
BspQI	GCTCTTC	1 cut(s)	2490
BspTI	CTTAAG	2 cut(s)	644, 1337
BspTNI	GGTCTC	2 cut(s)	138, 751
BsrBI	CCGCTC	1 cut(s)	3151
BsrDI	GCAATG	1 cut(s)	2076
BsrFI	RCCGGY	2 cut(s)	829, 1975
BsrGI	TGTACA	1 cut(s)	3066
BsrI	ACTGG	6 cut(s)	798, 1304, 1767, 1784, 2839, 2932
BssAI	RCCGGY	2 cut(s)	829, 1975
BssECI	CCNNGG	5 cut(s)	686, 1132, 1429, 2494, 3310
BssNI	GRCGYC	1 cut(s)	2770
BssSI	CACGAG	1 cut(s)	66
BssT1I	CCWWGG	4 cut(s)	686, 1429, 2494, 3310
Bst2BI	CACGAG	1 cut(s)	66
Bst2UI	CCWGG	1 cut(s)	1359
Bst4CI	ACNGT	4 cut(s)	461, 2157, 2259, 2820
Bst6I	CTCTTC	4 cut(s)	582, 939, 2344, 2490
BstACI	GRCGYC	1 cut(s)	2770
BstAFI	CTTAAG	2 cut(s)	644, 1337
BstAPI	GCANNNNNTGC	1 cut(s)	1385
BstAUI	TGTACA	1 cut(s)	3066
BstC8I	GCNNGC	8 cut(s)	978, 1603, 1991, 1995, 2002, 2326, 2565, 3075
BstDSI	CCRYGG	2 cut(s)	1132, 1429
BstEII	GGTNACC	1 cut(s)	331
BstMAI	GTCTC	6 cut(s)	138, 751, 2306, 2341, 2517, 3231
BstMWI	GCNNNNNNNGC	6 cut(s)	71, 604, 977, 1042, 1385, 1394
BstNI	CCWGG	1 cut(s)	1359
BstNSI	RCATGY	7 cut(s)	553, 1157, 1320, 1526, 1993, 2986, 3073
BstPAI	GACNNNNGTC	1 cut(s)	1779
BstPI	GGTNACC	1 cut(s)	331
BstSCI	CCNGG	2 cut(s)	1253, 1357
BstSFI	CTRYAG	4 cut(s)	674, 957, 1175, 1650
BstV1I	GCAGC	7 cut(s)	943, 1391, 1636, 1984, 2068, 2202, 2492
BstX2I	RGATCY	6 cut(s)	283, 714, 1762, 2171, 2581, 2947
BstYI	RGATCY	6 cut(s)	283, 714, 1762, 2171, 2581, 2947
Bsu15I	ATCGAT	1 cut(s)	414
BsuRI	GGCC	1 cut(s)	3034
BsuTUI	ATCGAT	1 cut(s)	414
BtgI	CCRYGG	2 cut(s)	1132, 1429
BtrI	CACGTC	3 cut(s)	635, 1016, 2814
BtsI	GCAGTG	2 cut(s)	14, 1840
BtsIMutI	CAGTG	9 cut(s)	14, 153, 805, 1774, 1840, 2153, 2264, 2816, 3320
BveI	ACCTGC	1 cut(s)	3211
Cac8I	GCNNGC	8 cut(s)	978, 1603, 1991, 1995, 2002, 2326, 2565, 3075
CaiI	CAGNNNCTG	2 cut(s)	2411, 2548
CciI	TCATGA	2 cut(s)	532, 2884
Cfr10I	RCCGGY	2 cut(s)	829, 1975
Cfr13I	GGNCC	5 cut(s)	768, 1781, 1913, 1973, 3033
ClaI	ATCGAT	1 cut(s)	414
CseI	GACGC	3 cut(s)	2288, 2759, 2854
Csp6I	GTAC	5 cut(s)	503, 1503, 2838, 3067, 3252
CspAI	ACCGGT	1 cut(s)	1975
CviQI	GTAC	5 cut(s)	503, 1503, 2838, 3067, 3252
DraIII	CACNNNGTG	1 cut(s)	1244
Eam1104I	CTCTTC	4 cut(s)	582, 939, 2344, 2490
EarI	CTCTTC	4 cut(s)	582, 939, 2344, 2490
Ecl136II	GAGCTC	2 cut(s)	1045, 2450
Eco130I	CCWWGG	4 cut(s)	686, 1429, 2494, 3310
Eco24I	GRGCYC	2 cut(s)	1047, 2452
Eco31I	GGTCTC	2 cut(s)	138, 751
Eco47I	GGWCC	4 cut(s)	768, 1781, 1913, 1973
Eco53kI	GAGCTC	2 cut(s)	1045, 2450
Eco57I	CTGAAG	1 cut(s)	1022
Eco88I	CYCGRG	2 cut(s)	1498, 2616
Eco91I	GGTNACC	1 cut(s)	331
EcoICRI	GAGCTC	2 cut(s)	1045, 2450
EcoO65I	GGTNACC	1 cut(s)	331
EcoRII	CCWGG	1 cut(s)	1357
EcoT14I	CCWWGG	4 cut(s)	686, 1429, 2494, 3310
EcoT22I	ATGCAT	2 cut(s)	1204, 3138
EcoT38I	GRGCYC	2 cut(s)	1047, 2452
ErhI	CCWWGG	4 cut(s)	686, 1429, 2494, 3310
FaqI	GGGAC	3 cut(s)	447, 2443, 2536
FauI	CCCGC	1 cut(s)	3082
FauNDI	CATATG	3 cut(s)	1814, 2308, 3099
FblI	GTMKAC	1 cut(s)	84
Fnu4HI	GCNGC	7 cut(s)	957, 1380, 1650, 1998, 2082, 2191, 2481
FriOI	GRGCYC	2 cut(s)	1047, 2452
Fsp4HI	GCNGC	7 cut(s)	957, 1380, 1650, 1998, 2082, 2191, 2481
GluI	GCNGC	7 cut(s)	957, 1380, 1650, 1998, 2082, 2191, 2481
GsaI	CCCAGC	2 cut(s)	2115, 2990
HaeIII	GGCC	1 cut(s)	3034
HapII	CCGG	5 cut(s)	830, 1254, 1976, 2141, 2589
HgaI	GACGC	3 cut(s)	2288, 2759, 2854
Hin1I	GRCGYC	1 cut(s)	2770
HincII	GTYRAC	1 cut(s)	681
HindII	GTYRAC	1 cut(s)	681
HindIII	AAGCTT	2 cut(s)	978, 1034
HpaII	CCGG	5 cut(s)	830, 1254, 1976, 2141, 2589
HphI	GGTGA	9 cut(s)	343, 790, 1075, 1196, 1813, 2364, 2415, 2745, 2990
Hpy166II	GTNNAC	4 cut(s)	85, 681, 1718, 3165
Hpy8I	GTNNAC	4 cut(s)	85, 681, 1718, 3165
Hpy99I	CGWCG	1 cut(s)	576
HpyAV	CCTTC	8 cut(s)	430, 996, 1102, 1276, 1798, 2257, 2361, 2475
HpyCH4III	ACNGT	4 cut(s)	461, 2157, 2259, 2820
HpyCH4IV	ACGT	7 cut(s)	634, 1015, 1103, 1729, 1776, 2813, 2959
HpyF10VI	GCNNNNNNNGC	6 cut(s)	71, 604, 977, 1042, 1385, 1394
HpySE526I	ACGT	7 cut(s)	634, 1015, 1103, 1729, 1776, 2813, 2959
Hsp92I	GRCGYC	1 cut(s)	2770
LguI	GCTCTTC	1 cut(s)	2490
Lsp1109I	GCAGC	7 cut(s)	943, 1391, 1636, 1984, 2068, 2202, 2492
LweI	GCATC	7 cut(s)	568, 804, 1211, 1588, 1600, 2189, 3326
MaeII	ACGT	7 cut(s)	634, 1015, 1103, 1729, 1776, 2813, 2959
MaeIII	GTNAC	8 cut(s)	331, 821, 1312, 1630, 1933, 2601, 2814, 2992
MbiI	CCGCTC	1 cut(s)	3151
MflI	RGATCY	6 cut(s)	283, 714, 1762, 2171, 2581, 2947
MhlI	GDGCHC	3 cut(s)	1047, 1131, 2452
MlyI	GAGTC	2 cut(s)	71, 1848
MmeI	TCCRAC	6 cut(s)	12, 95, 1672, 2513, 2540, 2987
Mph1103I	ATGCAT	2 cut(s)	1204, 3138
MroXI	GAANNNNTTC	1 cut(s)	743
MslI	CAYNNNNRTG	8 cut(s)	531, 871, 1158, 1521, 1589, 2257, 3003, 3090
MspA1I	CMGCKG	2 cut(s)	1508, 1682
MspCI	CTTAAG	2 cut(s)	644, 1337
MspI	CCGG	5 cut(s)	830, 1254, 1976, 2141, 2589
MspR9I	CCNGG	2 cut(s)	1255, 1359
Mva1269I	GAATGC	3 cut(s)	1518, 1627, 3136
MvaI	CCWGG	1 cut(s)	1359
MwoI	GCNNNNNNNGC	6 cut(s)	71, 604, 977, 1042, 1385, 1394
NciI	CCSGG	1 cut(s)	1255
NcoI	CCATGG	1 cut(s)	1429
NdeI	CATATG	3 cut(s)	1814, 2308, 3099
NheI	GCTAGC	1 cut(s)	1601
NlaIV	GGNNCC	7 cut(s)	834, 1236, 2145, 2395, 2500, 2898, 2949
NmuCI	GTSAC	4 cut(s)	331, 1630, 2601, 2814
NsiI	ATGCAT	2 cut(s)	1204, 3138
NspI	RCATGY	7 cut(s)	553, 1157, 1320, 1526, 1993, 2986, 3073
OliI	CACNNNNGTG	2 cut(s)	871, 2257
PaeI	GCATGC	1 cut(s)	1993
PaeR7I	CTCGAG	2 cut(s)	1498, 2616
PagI	TCATGA	2 cut(s)	532, 2884
PciI	ACATGT	2 cut(s)	549, 1316
PciSI	GCTCTTC	1 cut(s)	2490
PcsI	WCGNNNNNNNCGW	2 cut(s)	78, 403
PctI	GAATGC	3 cut(s)	1518, 1627, 3136
PdmI	GAANNNNTTC	1 cut(s)	743
PfeI	GAWTC	9 cut(s)	180, 664, 863, 1023, 1285, 2282, 2369, 2408, 2420
PflFI	GACNNNGTC	1 cut(s)	80
PflMI	CCANNNNNTGG	2 cut(s)	260, 2444
PfoI	TCCNGGA	1 cut(s)	1357
PinAI	ACCGGT	1 cut(s)	1975
PkrI	GCNGC	7 cut(s)	958, 1381, 1651, 1999, 2083, 2192, 2482
PleI	GAGTC	2 cut(s)	71, 1848
PpsI	GAGTC	2 cut(s)	71, 1848
PscI	ACATGT	2 cut(s)	549, 1316
PshAI	GACNNNNGTC	1 cut(s)	1779
PsiI	TTATAA	2 cut(s)	455, 2027
Psp124BI	GAGCTC	2 cut(s)	1047, 2452
Psp6I	CCWGG	1 cut(s)	1357
PspEI	GGTNACC	1 cut(s)	331
PspFI	CCCAGC	2 cut(s)	2111, 2986
PspGI	CCWGG	1 cut(s)	1357
PspN4I	GGNNCC	7 cut(s)	834, 1236, 2145, 2395, 2500, 2898, 2949
PspPI	GGNCC	5 cut(s)	768, 1781, 1913, 1973, 3033
PspXI	VCTCGAGB	2 cut(s)	1498, 2616
PstI	CTGCAG	3 cut(s)	678, 961, 1654
PstNI	CAGNNNCTG	2 cut(s)	2411, 2548
PsuI	RGATCY	6 cut(s)	283, 714, 1762, 2171, 2581, 2947
PsyI	GACNNNGTC	1 cut(s)	80
PvuII	CAGCTG	2 cut(s)	1508, 1682
RsaI	GTAC	5 cut(s)	504, 1504, 2839, 3068, 3253
RsaNI	GTAC	5 cut(s)	503, 1503, 2838, 3067, 3252
RseI	CAYNNNNRTG	8 cut(s)	531, 871, 1158, 1521, 1589, 2257, 3003, 3090
SacI	GAGCTC	2 cut(s)	1047, 2452
SapI	GCTCTTC	1 cut(s)	2490
SatI	GCNGC	7 cut(s)	957, 1380, 1650, 1998, 2082, 2191, 2481
Sau96I	GGNCC	5 cut(s)	768, 1781, 1913, 1973, 3033
SchI	GAGTC	2 cut(s)	71, 1848
ScrFI	CCNGG	2 cut(s)	1255, 1359
SduI	GDGCHC	3 cut(s)	1047, 1131, 2452
SfaNI	GCATC	7 cut(s)	568, 804, 1211, 1588, 1600, 2189, 3326
SfcI	CTRYAG	4 cut(s)	674, 957, 1175, 1650
Sfr274I	CTCGAG	2 cut(s)	1498, 2616
SinI	GGWCC	4 cut(s)	768, 1781, 1913, 1973
SlaI	CTCGAG	2 cut(s)	1498, 2616
SmiMI	CAYNNNNRTG	8 cut(s)	531, 871, 1158, 1521, 1589, 2257, 3003, 3090
SmlI	CTYRAG	6 cut(s)	644, 653, 1337, 1498, 2616, 2719
SmoI	CTYRAG	6 cut(s)	644, 653, 1337, 1498, 2616, 2719
SpeI	ACTAGT	2 cut(s)	1720, 2537
SphI	GCATGC	1 cut(s)	1993
SsiI	CCGC	7 cut(s)	99, 771, 1051, 1845, 2246, 3075, 3151
SspI	AATATT	1 cut(s)	2749
SstI	GAGCTC	2 cut(s)	1047, 2452
StyD4I	CCNGG	2 cut(s)	1253, 1357
StyI	CCWWGG	4 cut(s)	686, 1429, 2494, 3310
TaaI	ACNGT	4 cut(s)	461, 2157, 2259, 2820
TaiI	ACGT	7 cut(s)	637, 1018, 1106, 1732, 1779, 2816, 2962
TaqI	TCGA	8 cut(s)	92, 414, 1149, 1367, 1499, 1839, 1885, 2617
TaqII	GACCGA	1 cut(s)	629
TatI	WGTACW	2 cut(s)	1502, 3066
TfiI	GAWTC	9 cut(s)	180, 664, 863, 1023, 1285, 2282, 2369, 2408, 2420
TscAI	CASTG	9 cut(s)	21, 160, 805, 1774, 1840, 2160, 2264, 2823, 3327
TseFI	GTSAC	4 cut(s)	331, 1630, 2601, 2814
TseI	GCWGC	7 cut(s)	956, 1379, 1649, 1997, 2081, 2190, 2480
Tsp45I	GTSAC	4 cut(s)	331, 1630, 2601, 2814
TspDTI	ATGAA	9 cut(s)	432, 549, 677, 832, 957, 978, 1091, 2115, 3148
TspGWI	ACGGA	8 cut(s)	70, 250, 707, 1121, 2136, 2184, 2442, 2960
TspRI	CASTG	9 cut(s)	21, 160, 805, 1774, 1840, 2160, 2264, 2823, 3327
Tth111I	GACNNNGTC	1 cut(s)	80
Van91I	CCANNNNNTGG	2 cut(s)	260, 2444
Vha464I	CTTAAG	2 cut(s)	644, 1337
VpaK11BI	GGWCC	4 cut(s)	768, 1781, 1913, 1973
XapI	RAATTY	4 cut(s)	442, 854, 1903, 1965
XceI	RCATGY	7 cut(s)	553, 1157, 1320, 1526, 1993, 2986, 3073
XhoI	CTCGAG	2 cut(s)	1498, 2616
XmiI	GTMKAC	1 cut(s)	84
XmnI	GAANNNNTTC	1 cut(s)	743
Zsp2I	ATGCAT	2 cut(s)	1204, 3138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.