Rorug02G0338300
HSP70 Family

Belongs to the heat shock protein 70 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000503
Physical Location & Seq
Reverse (-)
42030737 .. 42032157
1421 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0338300.1

Sequence Viewer

Length: 1014 bp
ATGACACATACCACCAGGAAAAACTCCTATTCTTCCTCCAATTCTTCTTCTCCCATCTCGCGACGCAAACCTCATCGAAATTTTTTTAAACAAATCGATGAGTTCAACGACCCTTGGCAATCTCAGTCTCAATCTTCCTACGCTCCATCCGAACCAGAAACTAATTCACCAAGTGACCAATTTTCACTCCCCGAAACCAACGAAATCAAACCCCCACCTTGTCTGAGTTCACCATCCAACACGCAAAACTGGTACGTTCCCATTGCAGCCCTACCCATCTTTCACGGCGCTTCTGACGACAGCCCAGTCACCCATCTCAGCCGCTTCGCCAAATTTTGCCGCGCAAATTTCATACTTCAGCCAACAGTGGACGTAATGATGAGGATCTTCCCGGTCACGCTGGAAAACGAGGCTGCTCTGTGGTACGATTTGAACATAGAACCCTACCCTTGGCTTAATTGGGATGAAATCCGATCCTTGTTCTTGGAGGCATATAATAATATTGAACTGAAGACAGAGCTGACGACCATTCATCAGGGAGAAGAGGAGGCGGTGCGTTCTTATTTTCTGAGATTGCAGTGGATTCTAAAGCGGTGGGATGAGAGTGAAGAGTTTCGGGATTGGATTGTTCCCCAGAAACCCGATTCCTTAAACGACGCATTGCGGCTTGCGTTGGGGTTTGAACAAGTGAGGAGCAGTAGGGGTGTGACAAAAATGGAGGTCAAGTGTGGGTTTTGCGATGAGGATGGGCATGAGGAGAAAGGGTGTGAGGTTAGGGAGAGAATGAAGAGGTTGTGGGTGGAGAGAACGGAGGAGGAGGAGAAGAGTCAAGTGGGGAAGGAGTTGGTGAGGTGTGATTCTGTTTCAATGGGGAAGAGTGAAGGGGGAGAGGGGAAGAAGAAGAAGAAGAAGAGGAAGAGGCAGTGTCAGTGTTGGAAGAAAGAGCTTGAGAGGAGTAAAACCCTTGGGACTGGGAGTTTTAATGCAGATGTGAGAAATTCTATTTCAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko03018 ko04212 ko05152 map03018 map04212 map05152
Pfam Domains
Protein Families
HSP70

Protein Analysis

337

Amino Acids

39.14

Weight (kDa)

6.18

Isoelectric Point (pI)

71.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Retrotrans_gag PF03732 128 - 201 6.5e-06 Retrotransposon gag protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000503)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G14170
fragaria_vesca FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_1g19320 FvH4_2g11390 FvH4_2g11390 FvH4_2g11390 FvH4_2g11390 FvH4_2g11410 FvH4_2g11410
malus_domestica MD09G1234200.v1.1 MD15G1309700.v1.1
prunus_persica Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.6G205000_v2.0.a1 Prupe.8G073100_v2.0.a1 Prupe.8G073100_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1 Prupe.8G073300_v2.0.a1
pyrus_communis pycom09g15250 pycom15g27380
rosa_chinensis RchiOBHm_Chr2g0110691 RchiOBHm_Chr2g0137621 RchiOBHm_Chr6g0270041 RchiOBHm_Chr6g0270061 RchiOBHm_Chr6g0270141
rosa_laevigata RLG00000013815 RLG00000013819 RLG00000017831 RLG00000019609
rosa_multiflora Rmu_co8442727.1_g000001 Rmu_sc0000389.1_g000042 Rmu_sc0000918.1_g000033 Rmu_sc0003043.1_g000019 Rmu_sc0004376.1_g000013
rosa_roxburghii Rroxscaffold_2G00133030 Rroxscaffold_5G00350410 Rroxscaffold_5G00350420 Rroxscaffold_5G00350430 Rroxscaffold_6G00398360 Rroxscaffold_7G00198140 Rroxscaffold_7G00198180
rosa_rugosa Rorug02G0168700 Rorug02G0168800 Rorug02G0168800 Rorug02G0338300 Rorug06G0052100 Rorug06G0052200 Rorug06G0052800 Rorug06G0052900
rosa_samantha Rh2AG221000 Rh2AG387100 Rh2AG387200 Rh2AG547100 Rh2BG231100 Rh2BG504800 Rh2CG223400 Rh2CG374500 Rh2DG227200 Rh2DG410100 Rh2DG516200 Rh5CG251300 Rh6AG171200 Rh6AG171700 Rh6BG175700 Rh6BG176100 Rh6CG170500 Rh6CG171200 Rh6CG216400 Rh6DG162700 Rh6DG163000
rosa_wichuraiana Rw2G017050 Rw6G014700 Rw6G014740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 305
AccII CGCG 2 cut(s) 61, 342
AciI CCGC 5 cut(s) 322, 340, 551, 592, 664
AclWI GGATC 2 cut(s) 392, 468
AcsI RAATTY 4 cut(s) 79, 332, 346, 997
AcuI CTGAAG 2 cut(s) 341, 530
AdeI CACNNNGTG 1 cut(s) 173
AfaI GTAC 2 cut(s) 254, 425
AfiI CCNNNNNNNGG 1 cut(s) 450
AgsI TTSAA 5 cut(s) 106, 433, 506, 683, 867
AjnI CCWGG 1 cut(s) 14
AluBI AGCT 2 cut(s) 520, 946
AluI AGCT 2 cut(s) 520, 946
Alw26I GTCTC 1 cut(s) 132
AlwI GGATC 2 cut(s) 392, 468
ApeKI GCWGC 2 cut(s) 266, 413
ApoI RAATTY 4 cut(s) 79, 332, 346, 997
Asp700I GAANNNNTTC 1 cut(s) 612
AspLEI GCGC 2 cut(s) 290, 344
AsuC2I CCSGG 1 cut(s) 392
AsuHPI GGTGA 4 cut(s) 159, 222, 301, 859
BbsI GAAGAC 1 cut(s) 518
BbvI GCAGC 2 cut(s) 278, 400
BccI CCATC 6 cut(s) 62, 154, 241, 284, 321, 740
BceAI ACGGC 1 cut(s) 301
BciT130I CCWGG 1 cut(s) 16
BcnI CCSGG 1 cut(s) 392
BcoDI GTCTC 1 cut(s) 132
BfoI RGCGCY 1 cut(s) 291
BisI GCNGC 5 cut(s) 267, 322, 340, 414, 665
BlsI GCNGC 5 cut(s) 268, 323, 341, 415, 666
Bme1390I CCNGG 2 cut(s) 16, 392
BmrFI CCNGG 2 cut(s) 16, 392
BmrI ACTGGG 2 cut(s) 299, 981
BmuI ACTGGG 2 cut(s) 299, 981
BpiI GAAGAC 1 cut(s) 518
BpuEI CTTGAG 1 cut(s) 968
BpuMI CCSGG 1 cut(s) 392
Bsa29I ATCGAT 1 cut(s) 96
BsaBI GATNNNNATC 1 cut(s) 383
BsaJI CCNNGG 3 cut(s) 113, 449, 964
BsaXI ACNNNNNCTCC 4 cut(s) 710, 740, 749, 779
Bsc4I CCNNNNNNNGG 1 cut(s) 450
Bse1I ACTGG 3 cut(s) 254, 305, 976
Bse3DI GCAATG 2 cut(s) 261, 659
Bse8I GATNNNNATC 1 cut(s) 383
BseBI CCWGG 1 cut(s) 16
BseCI ATCGAT 1 cut(s) 96
BseDI CCNNGG 3 cut(s) 113, 449, 964
BseGI GGATG 5 cut(s) 146, 233, 469, 604, 751
BseJI GATNNNNATC 1 cut(s) 383
BseLI CCNNNNNNNGG 1 cut(s) 450
BseMI GCAATG 2 cut(s) 261, 659
BseMII CTCAG 4 cut(s) 137, 215, 331, 560
BseNI ACTGG 3 cut(s) 254, 305, 976
BseRI GAGGAG 7 cut(s) 560, 706, 770, 827, 830, 833, 967
BseXI GCAGC 2 cut(s) 278, 400
Bsh1236I CGCG 2 cut(s) 61, 342
BshVI ATCGAT 1 cut(s) 96
BsiSI CCGG 1 cut(s) 392
BslFI GGGAC 1 cut(s) 982
BslI CCNNNNNNNGG 1 cut(s) 450
BsmAI GTCTC 1 cut(s) 132
BsmFI GGGAC 1 cut(s) 982
Bsp143I GATC 2 cut(s) 384, 473
Bsp68I TCGCGA 1 cut(s) 61
BspACI CCGC 5 cut(s) 322, 340, 551, 592, 664
BspCNI CTCAG 4 cut(s) 136, 216, 330, 561
BspDI ATCGAT 1 cut(s) 96
BspFNI CGCG 2 cut(s) 61, 342
BspPI GGATC 2 cut(s) 392, 468
BsrDI GCAATG 2 cut(s) 261, 659
BsrI ACTGG 3 cut(s) 254, 305, 976
BssECI CCNNGG 3 cut(s) 113, 449, 964
BssMI GATC 2 cut(s) 384, 473
BssT1I CCWWGG 3 cut(s) 113, 449, 964
Bst2UI CCWGG 1 cut(s) 16
Bst4CI ACNGT 1 cut(s) 367
Bst6I CTCTTC 7 cut(s) 537, 603, 782, 818, 869, 905, 911
BstC8I GCNNGC 1 cut(s) 669
BstDEI CTNAG 4 cut(s) 123, 224, 317, 569
BstF5I GGATG 5 cut(s) 146, 233, 469, 604, 751
BstFNI CGCG 2 cut(s) 61, 342
BstH2I RGCGCY 1 cut(s) 291
BstHHI GCGC 2 cut(s) 290, 344
BstKTI GATC 2 cut(s) 387, 476
BstMAI GTCTC 1 cut(s) 132
BstMBI GATC 2 cut(s) 384, 473
BstNI CCWGG 1 cut(s) 16
BstSCI CCNGG 2 cut(s) 14, 390
BstUI CGCG 2 cut(s) 61, 342
BstV1I GCAGC 2 cut(s) 278, 400
BstV2I GAAGAC 1 cut(s) 518
BstX2I RGATCY 1 cut(s) 384
BstYI RGATCY 1 cut(s) 384
Bsu15I ATCGAT 1 cut(s) 96
BsuTUI ATCGAT 1 cut(s) 96
BtgZI GCGATG 1 cut(s) 753
BtsCI GGATG 5 cut(s) 146, 233, 469, 604, 751
BtsI GCAGTG 2 cut(s) 584, 929
BtsIMutI CAGTG 4 cut(s) 372, 584, 929, 935
BtuMI TCGCGA 1 cut(s) 61
Cac8I GCNNGC 1 cut(s) 669
CfoI GCGC 2 cut(s) 290, 344
ClaI ATCGAT 1 cut(s) 96
CseI GACGC 2 cut(s) 72, 665
Csp6I GTAC 2 cut(s) 253, 424
CviAII CATG 1 cut(s) 752
CviJI RGCY 9 cut(s) 269, 303, 321, 361, 413, 454, 520, 667, 946
CviKI_1 RGCY 9 cut(s) 269, 303, 321, 361, 413, 454, 520, 667, 946
CviQI GTAC 2 cut(s) 253, 424
DdeI CTNAG 4 cut(s) 123, 224, 317, 569
DpnI GATC 2 cut(s) 386, 475
DpnII GATC 2 cut(s) 384, 473
DraI TTTAAA 1 cut(s) 88
DraIII CACNNNGTG 1 cut(s) 173
DrdI GACNNNNNNGTC 1 cut(s) 305
DseDI GACNNNNNNGTC 1 cut(s) 305
Eam1104I CTCTTC 7 cut(s) 537, 603, 782, 818, 869, 905, 911
EarI CTCTTC 7 cut(s) 537, 603, 782, 818, 869, 905, 911
Eco130I CCWWGG 3 cut(s) 113, 449, 964
Eco57I CTGAAG 2 cut(s) 341, 530
EcoRII CCWGG 1 cut(s) 14
EcoT14I CCWWGG 3 cut(s) 113, 449, 964
ErhI CCWWGG 3 cut(s) 113, 449, 964
FaeI CATG 1 cut(s) 755
FaiI YATR 6 cut(s) 9, 353, 437, 493, 495, 753
FaqI GGGAC 1 cut(s) 982
FatI CATG 1 cut(s) 751
Fnu4HI GCNGC 5 cut(s) 267, 322, 340, 414, 665
FokI GGATG 5 cut(s) 133, 220, 476, 611, 758
Fsp4HI GCNGC 5 cut(s) 267, 322, 340, 414, 665
GlaI GCGC 2 cut(s) 289, 343
GluI GCNGC 5 cut(s) 267, 322, 340, 414, 665
HaeII RGCGCY 1 cut(s) 291
HapII CCGG 1 cut(s) 392
HgaI GACGC 2 cut(s) 72, 665
HhaI GCGC 2 cut(s) 290, 344
Hin1II CATG 1 cut(s) 755
Hin6I GCGC 2 cut(s) 288, 342
HinP1I GCGC 2 cut(s) 288, 342
HinfI GANTC 4 cut(s) 583, 644, 826, 857
HpaII CCGG 1 cut(s) 392
HphI GGTGA 4 cut(s) 159, 222, 301, 859
Hpy166II GTNNAC 2 cut(s) 230, 370
Hpy188I TCNGA 6 cut(s) 151, 225, 295, 473, 570, 1009
Hpy188III TCNNGA 2 cut(s) 60, 617
Hpy8I GTNNAC 2 cut(s) 230, 370
Hpy99I CGWCG 2 cut(s) 66, 659
HpyAV CCTTC 2 cut(s) 832, 875
HpyCH4III ACNGT 1 cut(s) 367
HpyCH4IV ACGT 2 cut(s) 255, 372
HpyCH4V TGCA 3 cut(s) 266, 577, 986
HpyF3I CTNAG 4 cut(s) 123, 224, 317, 569
HpySE526I ACGT 2 cut(s) 255, 372
Hsp92II CATG 1 cut(s) 755
HspAI GCGC 2 cut(s) 288, 342
Kzo9I GATC 2 cut(s) 384, 473
LmnI GCTCC 2 cut(s) 148, 693
LpnPI CCDG 9 cut(s) 28, 168, 235, 318, 386, 405, 521, 647, 957
Lsp1109I GCAGC 2 cut(s) 278, 400
MaeII ACGT 2 cut(s) 255, 372
MaeIII GTNAC 4 cut(s) 173, 307, 394, 706
MalI GATC 2 cut(s) 386, 475
MboI GATC 2 cut(s) 384, 473
MflI RGATCY 1 cut(s) 384
MluCI AATT 8 cut(s) 40, 79, 163, 179, 332, 346, 457, 997
MlyI GAGTC 1 cut(s) 835
MmeI TCCRAC 2 cut(s) 261, 914
MroXI GAANNNNTTC 1 cut(s) 612
MseI TTAA 4 cut(s) 87, 456, 650, 981
MspI CCGG 1 cut(s) 392
MspR9I CCNGG 2 cut(s) 16, 392
MvaI CCWGG 1 cut(s) 16
MvnI CGCG 2 cut(s) 61, 342
NciI CCSGG 1 cut(s) 392
NdeII GATC 2 cut(s) 384, 473
NlaIII CATG 1 cut(s) 755
NmuCI GTSAC 4 cut(s) 173, 307, 394, 706
NruI TCGCGA 1 cut(s) 61
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PdmI GAANNNNTTC 1 cut(s) 612
PfeI GAWTC 3 cut(s) 583, 644, 857
PkrI GCNGC 5 cut(s) 268, 323, 341, 415, 666
PleI GAGTC 1 cut(s) 834
PpsI GAGTC 1 cut(s) 834
Psp6I CCWGG 1 cut(s) 14
PspGI CCWGG 1 cut(s) 14
PsuI RGATCY 1 cut(s) 384
RruI TCGCGA 1 cut(s) 61
RsaI GTAC 2 cut(s) 254, 425
RsaNI GTAC 2 cut(s) 253, 424
SaqAI TTAA 4 cut(s) 87, 456, 650, 981
SatI GCNGC 5 cut(s) 267, 322, 340, 414, 665
Sau3AI GATC 2 cut(s) 384, 473
SchI GAGTC 1 cut(s) 835
ScrFI CCNGG 2 cut(s) 16, 392
SmlI CTYRAG 1 cut(s) 947
SmoI CTYRAG 1 cut(s) 947
Sse9I AATT 8 cut(s) 40, 79, 163, 179, 332, 346, 457, 997
SsiI CCGC 5 cut(s) 322, 340, 551, 592, 664
SspI AATATT 1 cut(s) 502
StyD4I CCNGG 2 cut(s) 14, 390
StyI CCWWGG 3 cut(s) 113, 449, 964
TaaI ACNGT 1 cut(s) 367
TaiI ACGT 2 cut(s) 258, 375
TaqI TCGA 2 cut(s) 76, 96
TasI AATT 8 cut(s) 40, 79, 163, 179, 332, 346, 457, 997
TauI GCSGC 3 cut(s) 324, 342, 667
TfiI GAWTC 3 cut(s) 583, 644, 857
Tru1I TTAA 4 cut(s) 87, 456, 650, 981
Tru9I TTAA 4 cut(s) 87, 456, 650, 981
TscAI CASTG 4 cut(s) 372, 584, 929, 935
TseFI GTSAC 4 cut(s) 173, 307, 394, 706
TseI GCWGC 2 cut(s) 266, 413
Tsp45I GTSAC 4 cut(s) 173, 307, 394, 706
TspDTI ATGAA 4 cut(s) 340, 480, 521, 800
TspGWI ACGGA 1 cut(s) 824
TspRI CASTG 4 cut(s) 372, 584, 929, 935
XapI RAATTY 4 cut(s) 79, 332, 346, 997
XmnI GAANNNNTTC 1 cut(s) 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.