pycom05g14110

endocytosis

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
17627904 .. 17628345
442 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 315 bp
ATGTCTAAATGTGCAGTCCAGATTGATAGAATGACTACCCATCATGCCGCATTATCTTTGATGGAGCGGTTTAGGGAGGGACGCCCTCTTCCAGCAGTGCTACCAAGCAATGTTATGTTTGCTAAATCCAATATTTTTGAACCTGCAAATAATTACTCCAATGCTGGCAATGTAGCCTGGAGACCTGCTTCTGGCTTTCAACAACAGCAACTGATGCCTGGTCTTGGTGCTCGGCACATGGCACCCCTAGCTGGAGGAAGCAGCAGGCCAATTAGCGGAAACCCAGAGTACTGGAATTGGAGAAACATCTTGTAG

Protein Analysis

105

Amino Acids

11.52

Weight (kDa)

10.39

Isoelectric Point (pI)

60.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 151, 193
AccB1I GGYRCC 1 cut(s) 241
AccBSI CCGCTC 1 cut(s) 67
AciI CCGC 3 cut(s) 48, 67, 276
AcyI GRCGYC 1 cut(s) 82
AfaI GTAC 1 cut(s) 290
AfiI CCNNNNNNNGG 4 cut(s) 191, 224, 251, 275
AgsI TTSAA 2 cut(s) 140, 200
AjnI CCWGG 2 cut(s) 176, 217
AluBI AGCT 1 cut(s) 251
AluI AGCT 1 cut(s) 251
Alw21I GWGCWC 1 cut(s) 232
Alw26I GTCTC 1 cut(s) 175
AlwNI CAGNNNCTG 1 cut(s) 211
AoxI GGCC 1 cut(s) 266
ApeKI GCWGC 1 cut(s) 261
BanI GGYRCC 1 cut(s) 241
Bbv12I GWGCWC 1 cut(s) 232
BbvI GCAGC 1 cut(s) 273
BccI CCATC 2 cut(s) 48, 55
BciT130I CCWGG 2 cut(s) 178, 219
BcoDI GTCTC 1 cut(s) 175
BfaI CTAG 1 cut(s) 248
BfuAI ACCTGC 2 cut(s) 151, 193
BisI GCNGC 2 cut(s) 48, 262
BlsI GCNGC 2 cut(s) 49, 263
BmcAI AGTACT 1 cut(s) 290
Bme1390I CCNGG 2 cut(s) 178, 219
BmiI GGNNCC 1 cut(s) 243
BmrFI CCNGG 2 cut(s) 178, 219
BmsI GCATC 1 cut(s) 204
BpmI CTGGAG 2 cut(s) 199, 273
BsaHI GRCGYC 1 cut(s) 82
BsaI GGTCTC 1 cut(s) 175
Bsc4I CCNNNNNNNGG 4 cut(s) 191, 224, 251, 275
Bse1I ACTGG 1 cut(s) 296
Bse3DI GCAATG 2 cut(s) 115, 175
BseBI CCWGG 2 cut(s) 178, 219
BseLI CCNNNNNNNGG 4 cut(s) 191, 224, 251, 275
BseMI GCAATG 2 cut(s) 115, 175
BseNI ACTGG 1 cut(s) 296
BseXI GCAGC 1 cut(s) 273
BsgI GTGCAG 1 cut(s) 33
BshFI GGCC 1 cut(s) 268
BshNI GGYRCC 1 cut(s) 241
BsiHKAI GWGCWC 1 cut(s) 232
BslFI GGGAC 1 cut(s) 93
BslI CCNNNNNNNGG 4 cut(s) 191, 224, 251, 275
BsmAI GTCTC 1 cut(s) 175
BsmFI GGGAC 1 cut(s) 93
BsnI GGCC 1 cut(s) 268
Bso31I GGTCTC 1 cut(s) 175
Bsp1286I GDGCHC 1 cut(s) 232
BspACI CCGC 3 cut(s) 48, 67, 276
BspANI GGCC 1 cut(s) 268
BspLI GGNNCC 1 cut(s) 243
BspMI ACCTGC 2 cut(s) 151, 193
BspT107I GGYRCC 1 cut(s) 241
BspTNI GGTCTC 1 cut(s) 175
BsrBI CCGCTC 1 cut(s) 67
BsrDI GCAATG 2 cut(s) 115, 175
BsrI ACTGG 1 cut(s) 296
BssNI GRCGYC 1 cut(s) 82
Bst2UI CCWGG 2 cut(s) 178, 219
Bst6I CTCTTC 1 cut(s) 93
BstACI GRCGYC 1 cut(s) 82
BstAPI GCANNNNNTGC 1 cut(s) 214
BstC8I GCNNGC 2 cut(s) 166, 266
BstMAI GTCTC 1 cut(s) 175
BstMWI GCNNNNNNNGC 2 cut(s) 214, 248
BstNI CCWGG 2 cut(s) 178, 219
BstSCI CCNGG 2 cut(s) 176, 217
BstV1I GCAGC 1 cut(s) 273
BstXI CCANNNNNNTGG 1 cut(s) 291
BsuRI GGCC 1 cut(s) 268
BtsI GCAGTG 1 cut(s) 102
BtsIMutI CAGTG 1 cut(s) 102
BveI ACCTGC 2 cut(s) 151, 193
Cac8I GCNNGC 2 cut(s) 166, 266
CaiI CAGNNNCTG 1 cut(s) 211
CseI GACGC 1 cut(s) 90
Csp6I GTAC 1 cut(s) 289
CviAII CATG 2 cut(s) 44, 238
CviJI RGCY 4 cut(s) 176, 195, 251, 268
CviKI_1 RGCY 4 cut(s) 176, 195, 251, 268
CviQI GTAC 1 cut(s) 289
Eam1104I CTCTTC 1 cut(s) 93
EarI CTCTTC 1 cut(s) 93
Eco31I GGTCTC 1 cut(s) 175
EcoRII CCWGG 2 cut(s) 176, 217
FaeI CATG 2 cut(s) 47, 241
FaiI YATR 3 cut(s) 45, 116, 239
FaqI GGGAC 1 cut(s) 93
FatI CATG 2 cut(s) 43, 237
Fnu4HI GCNGC 2 cut(s) 48, 262
Fsp4HI GCNGC 2 cut(s) 48, 262
FspBI CTAG 1 cut(s) 248
GluI GCNGC 2 cut(s) 48, 262
GsuI CTGGAG 2 cut(s) 199, 273
HaeIII GGCC 1 cut(s) 268
HgaI GACGC 1 cut(s) 90
Hin1I GRCGYC 1 cut(s) 82
Hin1II CATG 2 cut(s) 47, 241
Hpy188III TCNNGA 1 cut(s) 19
HpyCH4V TGCA 2 cut(s) 14, 146
HpyF10VI GCNNNNNNNGC 2 cut(s) 214, 248
Hsp92I GRCGYC 1 cut(s) 82
Hsp92II CATG 2 cut(s) 47, 241
LmnI GCTCC 1 cut(s) 64
Lsp1109I GCAGC 1 cut(s) 273
LweI GCATC 1 cut(s) 204
MaeI CTAG 1 cut(s) 248
MbiI CCGCTC 1 cut(s) 67
MboII GAAGA 1 cut(s) 80
MhlI GDGCHC 1 cut(s) 232
MluCI AATT 3 cut(s) 151, 270, 295
MnlI CCTC 3 cut(s) 70, 96, 248
MspR9I CCNGG 2 cut(s) 178, 219
MvaI CCWGG 2 cut(s) 178, 219
MwoI GCNNNNNNNGC 2 cut(s) 214, 248
NlaIII CATG 2 cut(s) 47, 241
NlaIV GGNNCC 1 cut(s) 243
NmeAIII GCCGAG 1 cut(s) 211
PkrI GCNGC 2 cut(s) 49, 263
Psp6I CCWGG 2 cut(s) 176, 217
PspGI CCWGG 2 cut(s) 176, 217
PspN4I GGNNCC 1 cut(s) 243
PstNI CAGNNNCTG 1 cut(s) 211
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
SatI GCNGC 2 cut(s) 48, 262
ScaI AGTACT 1 cut(s) 290
ScrFI CCNGG 2 cut(s) 178, 219
SduI GDGCHC 1 cut(s) 232
SetI ASST 3 cut(s) 145, 187, 253
SfaNI GCATC 1 cut(s) 204
Sse9I AATT 3 cut(s) 151, 270, 295
SsiI CCGC 3 cut(s) 48, 67, 276
SspI AATATT 1 cut(s) 133
SspMI CTAG 1 cut(s) 248
StyD4I CCNGG 2 cut(s) 176, 217
TasI AATT 3 cut(s) 151, 270, 295
TatI WGTACW 1 cut(s) 288
TauI GCSGC 1 cut(s) 50
TscAI CASTG 1 cut(s) 102
TseI GCWGC 1 cut(s) 261
TspRI CASTG 1 cut(s) 102
XspI CTAG 1 cut(s) 248
ZrmI AGTACT 1 cut(s) 290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.