Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001694

Physical Location & Seq

Genomic Coordinates Forward (+)

17948391 .. 17948858

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGGTCCTCCGAATTCGTGGTTTTCTGATTCTTCTGGGCGCTCCTTATGCGTACTGCAGCCTGAGCGCGCGGCGCTCTCGATTGATTCGTGGTCTGATCTCCCGCGAATCGCAATCCGACGGTGGCGATGACATCGCCTTCCGATGGGCCGATTTGGACCGCGATGGCCGGATTAGTGGCAATGAAGCCGTCGCTTTCTTCCAGGGCTCTGGTCACCCAAACAGGTCCTTGCTCAGTTCGTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000183 GO:0000407 GO:0003674 GO:0005488 GO:0005543 GO:0005546 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006325 GO:0006342 GO:0006355 GO:0006914 GO:0006950 GO:0006996 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009267 GO:0009405 GO:0009605 GO:0009607 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0022610 GO:0023052 GO:0030447 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031505 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0035091 GO:0035556 GO:0036170 GO:0036180 GO:0040007 GO:0040029 GO:0042594 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044182 GO:0044237 GO:0044248 GO:0044403 GO:0044406 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045814 GO:0045892 GO:0045934 GO:0048017 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051704 GO:0051716 GO:0060255 GO:0061919 GO:0065007 GO:0071496 GO:0071554 GO:0071555 GO:0071840 GO:0071852 GO:0080090 GO:1901981 GO:1902679 GO:1902936 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_4 EF-hand_5

Protein Analysis

82

Amino Acids

8.92

Weight (kDa)

9.48

Isoelectric Point (pI)

59.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001694)

Species	Orthologous Gene IDs
malus_domestica	MD05G1136000.v1.1 MD05G1136900.v1.1 MD05G1137100.v1.1 MD05G1138200.v1.1 MD05G1145300.v1.1 MD05G1146300.v1.1 MD05G1146800.v1.1 MD05G1148100.v1.1 MD05G1148500.v1.1 MD05G1149300.v1.1 MD05G1151100.v1.1
prunus_persica	Prupe.3G303200_v2.0.a1
pyrus_communis	pycom05g09410 pycom05g14110 pycom05g14180 pycom05g14200 pycom05g14240 pycom05g14410 pycom05g14420 pycom05g14520
rosa_chinensis	RchiOBHm_Chr1g0347451 RchiOBHm_Chr1g0369671 RchiOBHm_Chr2g0155631 RchiOBHm_Chr4g0392331 RchiOBHm_Chr7g0235731
rosa_multiflora	Rmu_sc0001136.1_g000048 Rmu_sc0001303.1_g000011 Rmu_sc0001303.1_g000012 Rmu_sc0001438.1_g000031 Rmu_sc0001565.1_g000027 Rmu_sc0003971.1_g000008 Rmu_ssc0000204.1_g000017
rosa_roxburghii	Rroxscaffold_1G00011090 Rroxscaffold_2G00104930 Rroxscaffold_4G00323910
rosa_rugosa	Rorug02G0242700
rosa_samantha	Rh1BG258000 Rh1DG288300 Rh2BG002900 Rh2CG036300 Rh4BG297400 Rh4DG026000 Rh5AG137900 Rh5CG360800 Rh6DG425600 Rh6DG513500 Rh7CG273500 Rh7DG197600 Rh7DG400500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	68, 70, 105, 162
AciI	CCGC	3 cut(s)	70, 103, 160
AcoI	YGGCCR	1 cut(s)	166
AcsI	RAATTY	1 cut(s)	12
AfaI	GTAC	1 cut(s)	53
AfiI	CCNNNNNNNGG	1 cut(s)	144
AjnI	CCWGG	1 cut(s)	201
AoxI	GGCC	2 cut(s)	147, 166
ApeKI	GCWGC	1 cut(s)	57
ApoI	RAATTY	1 cut(s)	12
AspLEI	GCGC	4 cut(s)	41, 68, 70, 75
AspS9I	GGNCC	4 cut(s)	4, 147, 157, 225
AsuHPI	GGTGA	1 cut(s)	206
AvaII	GGWCC	3 cut(s)	4, 157, 225
BanII	GRGCYC	1 cut(s)	209
BbvI	GCAGC	1 cut(s)	69
BccI	CCATC	2 cut(s)	138, 158
BceAI	ACGGC	1 cut(s)	173
BciT130I	CCWGG	1 cut(s)	203
BfmI	CTRYAG	1 cut(s)	55
BfoI	RGCGCY	2 cut(s)	42, 76
BisI	GCNGC	2 cut(s)	58, 71
BlsI	GCNGC	2 cut(s)	59, 72
Bme1390I	CCNGG	1 cut(s)	203
Bme18I	GGWCC	3 cut(s)	4, 157, 225
BmgT120I	GGNCC	4 cut(s)	4, 147, 157, 225
BmrFI	CCNGG	1 cut(s)	203
Bpu10I	CCTNAGC	1 cut(s)	62
BsaJI	CCNNGG	1 cut(s)	202
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse3DI	GCAATG	1 cut(s)	187
BseBI	CCWGG	1 cut(s)	203
BseDI	CCNNGG	1 cut(s)	202
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMI	GCAATG	1 cut(s)	187
BseMII	CTCAG	1 cut(s)	53
BsePI	GCGCGC	1 cut(s)	66
BseXI	GCAGC	1 cut(s)	69
Bsh1236I	CGCG	4 cut(s)	68, 70, 105, 162
BshFI	GGCC	2 cut(s)	149, 168
BsiSI	CCGG	1 cut(s)	169
BslI	CCNNNNNNNGG	1 cut(s)	144
BsnI	GGCC	2 cut(s)	149, 168
Bsp1286I	GDGCHC	1 cut(s)	209
Bsp143I	GATC	1 cut(s)	96
BspACI	CCGC	3 cut(s)	70, 103, 160
BspANI	GGCC	2 cut(s)	149, 168
BspCNI	CTCAG	2 cut(s)	54, 246
BspFNI	CGCG	4 cut(s)	68, 70, 105, 162
BspMAI	CTGCAG	1 cut(s)	59
BsrDI	GCAATG	1 cut(s)	187
BssECI	CCNNGG	1 cut(s)	202
BssHII	GCGCGC	1 cut(s)	66
BssMI	GATC	1 cut(s)	96
Bst2UI	CCWGG	1 cut(s)	203
Bst4CI	ACNGT	1 cut(s)	122
BstC8I	GCNNGC	1 cut(s)	68
BstDEI	CTNAG	2 cut(s)	62, 233
BstEII	GGTNACC	1 cut(s)	212
BstFNI	CGCG	4 cut(s)	68, 70, 105, 162
BstH2I	RGCGCY	2 cut(s)	42, 76
BstHHI	GCGC	4 cut(s)	41, 68, 70, 75
BstKTI	GATC	1 cut(s)	99
BstMBI	GATC	1 cut(s)	96
BstMWI	GCNNNNNNNGC	3 cut(s)	47, 63, 72
BstNI	CCWGG	1 cut(s)	203
BstPI	GGTNACC	1 cut(s)	212
BstSCI	CCNGG	1 cut(s)	201
BstSFI	CTRYAG	1 cut(s)	55
BstUI	CGCG	4 cut(s)	68, 70, 105, 162
BstV1I	GCAGC	1 cut(s)	69
BstXI	CCANNNNNNTGG	1 cut(s)	209
BsuRI	GGCC	2 cut(s)	149, 168
BtgZI	GCGATG	3 cut(s)	118, 141, 177
Cac8I	GCNNGC	1 cut(s)	68
CfoI	GCGC	4 cut(s)	41, 68, 70, 75
Cfr13I	GGNCC	4 cut(s)	4, 147, 157, 225
Csp6I	GTAC	1 cut(s)	52
CviJI	RGCY	5 cut(s)	60, 149, 168, 188, 207
CviKI_1	RGCY	5 cut(s)	60, 149, 168, 188, 207
CviQI	GTAC	1 cut(s)	52
DdeI	CTNAG	2 cut(s)	62, 233
DpnI	GATC	1 cut(s)	98
DpnII	GATC	1 cut(s)	96
EaeI	YGGCCR	1 cut(s)	166
Eco24I	GRGCYC	1 cut(s)	209
Eco47I	GGWCC	3 cut(s)	4, 157, 225
Eco91I	GGTNACC	1 cut(s)	212
EcoO109I	RGGNCCY	1 cut(s)	225
EcoO65I	GGTNACC	1 cut(s)	212
EcoRI	GAATTC	1 cut(s)	12
EcoRII	CCWGG	1 cut(s)	201
EcoT38I	GRGCYC	1 cut(s)	209
FaiI	YATR	1 cut(s)	48
FauI	CCCGC	1 cut(s)	110
Fnu4HI	GCNGC	2 cut(s)	58, 71
FriOI	GRGCYC	1 cut(s)	209
Fsp4HI	GCNGC	2 cut(s)	58, 71
GlaI	GCGC	4 cut(s)	40, 67, 69, 74
GluI	GCNGC	2 cut(s)	58, 71
HaeII	RGCGCY	2 cut(s)	42, 76
HaeIII	GGCC	2 cut(s)	149, 168
HapII	CCGG	1 cut(s)	169
HhaI	GCGC	4 cut(s)	41, 68, 70, 75
Hin6I	GCGC	4 cut(s)	39, 66, 68, 73
HinP1I	GCGC	4 cut(s)	39, 66, 68, 73
HinfI	GANTC	3 cut(s)	28, 85, 107
HpaII	CCGG	1 cut(s)	169
HphI	GGTGA	1 cut(s)	206
Hpy188I	TCNGA	5 cut(s)	11, 27, 96, 118, 143
Hpy188III	TCNNGA	1 cut(s)	78
Hpy99I	CGWCG	2 cut(s)	122, 194
HpyAV	CCTTC	1 cut(s)	148
HpyCH4III	ACNGT	1 cut(s)	122
HpyCH4V	TGCA	1 cut(s)	57
HpyF10VI	GCNNNNNNNGC	3 cut(s)	47, 63, 72
HpyF3I	CTNAG	2 cut(s)	62, 233
HspAI	GCGC	4 cut(s)	39, 66, 68, 73
Kzo9I	GATC	1 cut(s)	96
LmnI	GCTCC	1 cut(s)	46
LpnPI	CCDG	7 cut(s)	20, 74, 182, 188, 195, 208, 215
Lsp1109I	GCAGC	1 cut(s)	69
MaeIII	GTNAC	1 cut(s)	212
MalI	GATC	1 cut(s)	98
MboI	GATC	1 cut(s)	96
MboII	GAAGA	2 cut(s)	23, 190
MhlI	GDGCHC	1 cut(s)	209
MluCI	AATT	1 cut(s)	12
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	1 cut(s)	17
MspI	CCGG	1 cut(s)	169
MspR9I	CCNGG	1 cut(s)	203
MteI	GCGCNGCGC	1 cut(s)	71
MvaI	CCWGG	1 cut(s)	203
MvnI	CGCG	4 cut(s)	68, 70, 105, 162
MwoI	GCNNNNNNNGC	3 cut(s)	47, 63, 72
NdeII	GATC	1 cut(s)	96
NmuCI	GTSAC	1 cut(s)	212
PauI	GCGCGC	1 cut(s)	66
PcsI	WCGNNNNNNNCGW	1 cut(s)	85
PfeI	GAWTC	3 cut(s)	28, 85, 107
PkrI	GCNGC	2 cut(s)	59, 72
PpuMI	RGGWCCY	1 cut(s)	225
Psp5II	RGGWCCY	1 cut(s)	225
Psp6I	CCWGG	1 cut(s)	201
PspEI	GGTNACC	1 cut(s)	212
PspGI	CCWGG	1 cut(s)	201
PspPI	GGNCC	4 cut(s)	4, 147, 157, 225
PspPPI	RGGWCCY	1 cut(s)	225
PstI	CTGCAG	1 cut(s)	59
PteI	GCGCGC	1 cut(s)	66
RsaI	GTAC	1 cut(s)	53
RsaNI	GTAC	1 cut(s)	52
SatI	GCNGC	2 cut(s)	58, 71
Sau3AI	GATC	1 cut(s)	96
Sau96I	GGNCC	4 cut(s)	4, 147, 157, 225
ScrFI	CCNGG	1 cut(s)	203
SduI	GDGCHC	1 cut(s)	209
SetI	ASST	1 cut(s)	227
SfcI	CTRYAG	1 cut(s)	55
SinI	GGWCC	3 cut(s)	4, 157, 225
Sse9I	AATT	1 cut(s)	12
SsiI	CCGC	3 cut(s)	70, 103, 160
StyD4I	CCNGG	1 cut(s)	201
TaaI	ACNGT	1 cut(s)	122
TaqI	TCGA	1 cut(s)	79
TasI	AATT	1 cut(s)	12
TauI	GCSGC	1 cut(s)	73
TfiI	GAWTC	3 cut(s)	28, 85, 107
TseFI	GTSAC	1 cut(s)	212
TseI	GCWGC	1 cut(s)	57
Tsp45I	GTSAC	1 cut(s)	212
TspDTI	ATGAA	1 cut(s)	198
VpaK11BI	GGWCC	3 cut(s)	4, 157, 225
XapI	RAATTY	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.