Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001694

Physical Location & Seq

Genomic Coordinates Forward (+)

17949470 .. 17949841

Gene Structure 372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGACTACCTATCATGCCGCATTATCTTTGATGGAGCGGTTTAGGGAGGGACGCCCTCTTCCAGCAGTGCTACCAAGCAATGTTATGTTTGATAAATCCAATATTTTTGAACCTGCAAATAATTACTCCAATGCTGGCATTGTAGCCTGGAGACCTGCTTCTGGCTTTCAACAACAGCAACTGATGCCTGGTCTTGGTGCTCAGCACATGGCACCCCTAGCTGGAGGCAGGCCACCGAAGACGGTTGCTCCTTCTCATGCTGAGGAAAAGCAGCAGGCCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000183 GO:0000407 GO:0003674 GO:0005488 GO:0005543 GO:0005546 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006325 GO:0006342 GO:0006355 GO:0006914 GO:0006950 GO:0006996 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008289 GO:0009056 GO:0009267 GO:0009405 GO:0009605 GO:0009607 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0022610 GO:0023052 GO:0030447 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031505 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0035091 GO:0035556 GO:0036170 GO:0036180 GO:0040007 GO:0040029 GO:0042594 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044182 GO:0044237 GO:0044248 GO:0044403 GO:0044406 GO:0044419 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0045814 GO:0045892 GO:0045934 GO:0048017 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051704 GO:0051716 GO:0060255 GO:0061919 GO:0065007 GO:0071496 GO:0071554 GO:0071555 GO:0071840 GO:0071852 GO:0080090 GO:1901981 GO:1902679 GO:1902936 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_4 EF-hand_5

Protein Analysis

95

Amino Acids

10.23

Weight (kDa)

9.39

Isoelectric Point (pI)

63.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001694)

Species	Orthologous Gene IDs
malus_domestica	MD05G1136000.v1.1 MD05G1136900.v1.1 MD05G1137100.v1.1 MD05G1138200.v1.1 MD05G1145300.v1.1 MD05G1146300.v1.1 MD05G1146800.v1.1 MD05G1148100.v1.1 MD05G1148500.v1.1 MD05G1149300.v1.1 MD05G1151100.v1.1
prunus_persica	Prupe.3G303200_v2.0.a1
pyrus_communis	pycom05g09410 pycom05g14110 pycom05g14180 pycom05g14200 pycom05g14240 pycom05g14410 pycom05g14420 pycom05g14520
rosa_chinensis	RchiOBHm_Chr1g0347451 RchiOBHm_Chr1g0369671 RchiOBHm_Chr2g0155631 RchiOBHm_Chr4g0392331 RchiOBHm_Chr7g0235731
rosa_multiflora	Rmu_sc0001136.1_g000048 Rmu_sc0001303.1_g000011 Rmu_sc0001303.1_g000012 Rmu_sc0001438.1_g000031 Rmu_sc0001565.1_g000027 Rmu_sc0003971.1_g000008 Rmu_ssc0000204.1_g000017
rosa_roxburghii	Rroxscaffold_1G00011090 Rroxscaffold_2G00104930 Rroxscaffold_4G00323910
rosa_rugosa	Rorug02G0242700
rosa_samantha	Rh1BG258000 Rh1DG288300 Rh2BG002900 Rh2CG036300 Rh4BG297400 Rh4DG026000 Rh5AG137900 Rh5CG360800 Rh6DG425600 Rh6DG513500 Rh7CG273500 Rh7DG197600 Rh7DG400500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	121, 163
AccB1I	GGYRCC	1 cut(s)	211
AccBSI	CCGCTC	1 cut(s)	37
AciI	CCGC	2 cut(s)	18, 37
AcyI	GRCGYC	1 cut(s)	52
AfiI	CCNNNNNNNGG	3 cut(s)	161, 194, 221
AgsI	TTSAA	2 cut(s)	110, 170
AjnI	CCWGG	2 cut(s)	146, 187
AluBI	AGCT	1 cut(s)	221
AluI	AGCT	1 cut(s)	221
Alw21I	GWGCWC	1 cut(s)	202
Alw26I	GTCTC	1 cut(s)	145
AlwNI	CAGNNNCTG	1 cut(s)	181
AoxI	GGCC	2 cut(s)	230, 276
ApeKI	GCWGC	1 cut(s)	271
BanI	GGYRCC	1 cut(s)	211
BbsI	GAAGAC	1 cut(s)	245
Bbv12I	GWGCWC	1 cut(s)	202
BbvCI	CCTCAGC	1 cut(s)	261
BccI	CCATC	1 cut(s)	25
BciT130I	CCWGG	2 cut(s)	148, 189
BcoDI	GTCTC	1 cut(s)	145
BfaI	CTAG	1 cut(s)	218
BfuAI	ACCTGC	2 cut(s)	121, 163
BisI	GCNGC	2 cut(s)	18, 272
BlpI	GCTNAGC	1 cut(s)	201
BlsI	GCNGC	2 cut(s)	19, 273
Bme1390I	CCNGG	2 cut(s)	148, 189
BmiI	GGNNCC	1 cut(s)	213
BmrFI	CCNGG	2 cut(s)	148, 189
BmsI	GCATC	1 cut(s)	174
BpiI	GAAGAC	1 cut(s)	245
BpmI	CTGGAG	2 cut(s)	169, 243
Bpu10I	CCTNAGC	1 cut(s)	261
Bpu1102I	GCTNAGC	1 cut(s)	201
BsaHI	GRCGYC	1 cut(s)	52
BsaI	GGTCTC	1 cut(s)	145
BsaXI	ACNNNNNCTCC	2 cut(s)	232, 262
Bsc4I	CCNNNNNNNGG	3 cut(s)	161, 194, 221
Bse3DI	GCAATG	1 cut(s)	85
BseBI	CCWGG	2 cut(s)	148, 189
BseLI	CCNNNNNNNGG	3 cut(s)	161, 194, 221
BseMI	GCAATG	1 cut(s)	85
BseMII	CTCAG	2 cut(s)	215, 252
BshFI	GGCC	2 cut(s)	232, 278
BshNI	GGYRCC	1 cut(s)	211
BsiHKAI	GWGCWC	1 cut(s)	202
BslFI	GGGAC	1 cut(s)	63
BslI	CCNNNNNNNGG	3 cut(s)	161, 194, 221
BsmAI	GTCTC	1 cut(s)	145
BsmFI	GGGAC	1 cut(s)	63
BsnI	GGCC	2 cut(s)	232, 278
Bso31I	GGTCTC	1 cut(s)	145
Bsp1286I	GDGCHC	1 cut(s)	202
Bsp1720I	GCTNAGC	1 cut(s)	201
BspACI	CCGC	2 cut(s)	18, 37
BspANI	GGCC	2 cut(s)	232, 278
BspCNI	CTCAG	2 cut(s)	214, 253
BspLI	GGNNCC	1 cut(s)	213
BspMI	ACCTGC	2 cut(s)	121, 163
BspT107I	GGYRCC	1 cut(s)	211
BspTNI	GGTCTC	1 cut(s)	145
BsrBI	CCGCTC	1 cut(s)	37
BsrDI	GCAATG	1 cut(s)	85
BssNI	GRCGYC	1 cut(s)	52
Bst2UI	CCWGG	2 cut(s)	148, 189
Bst4CI	ACNGT	1 cut(s)	244
Bst6I	CTCTTC	1 cut(s)	63
BstACI	GRCGYC	1 cut(s)	52
BstAPI	GCANNNNNTGC	1 cut(s)	184
BstC8I	GCNNGC	3 cut(s)	136, 230, 276
BstDEI	CTNAG	2 cut(s)	201, 261
BstMAI	GTCTC	1 cut(s)	145
BstMWI	GCNNNNNNNGC	2 cut(s)	184, 218
BstNI	CCWGG	2 cut(s)	148, 189
BstSCI	CCNGG	2 cut(s)	146, 187
BstV2I	GAAGAC	1 cut(s)	245
BsuRI	GGCC	2 cut(s)	232, 278
BtsI	GCAGTG	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	72
BveI	ACCTGC	2 cut(s)	121, 163
Cac8I	GCNNGC	3 cut(s)	136, 230, 276
CaiI	CAGNNNCTG	1 cut(s)	181
CseI	GACGC	1 cut(s)	60
CviAII	CATG	3 cut(s)	14, 208, 257
CviJI	RGCY	5 cut(s)	146, 165, 221, 232, 278
CviKI_1	RGCY	5 cut(s)	146, 165, 221, 232, 278
DdeI	CTNAG	2 cut(s)	201, 261
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Eco31I	GGTCTC	1 cut(s)	145
EcoRII	CCWGG	2 cut(s)	146, 187
FaeI	CATG	3 cut(s)	17, 211, 260
FaiI	YATR	4 cut(s)	15, 86, 209, 258
FaqI	GGGAC	1 cut(s)	63
FatI	CATG	3 cut(s)	13, 207, 256
Fnu4HI	GCNGC	2 cut(s)	18, 272
Fsp4HI	GCNGC	2 cut(s)	18, 272
FspBI	CTAG	1 cut(s)	218
GluI	GCNGC	2 cut(s)	18, 272
GsuI	CTGGAG	2 cut(s)	169, 243
HaeIII	GGCC	2 cut(s)	232, 278
HgaI	GACGC	1 cut(s)	60
Hin1I	GRCGYC	1 cut(s)	52
Hin1II	CATG	3 cut(s)	17, 211, 260
HpyAV	CCTTC	1 cut(s)	261
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4V	TGCA	1 cut(s)	116
HpyF10VI	GCNNNNNNNGC	2 cut(s)	184, 218
HpyF3I	CTNAG	2 cut(s)	201, 261
Hsp92I	GRCGYC	1 cut(s)	52
Hsp92II	CATG	3 cut(s)	17, 211, 260
LmnI	GCTCC	2 cut(s)	34, 253
LweI	GCATC	1 cut(s)	174
MaeI	CTAG	1 cut(s)	218
MbiI	CCGCTC	1 cut(s)	37
MboII	GAAGA	2 cut(s)	50, 250
MhlI	GDGCHC	1 cut(s)	202
MluCI	AATT	2 cut(s)	121, 280
MnlI	CCTC	4 cut(s)	40, 66, 218, 256
MspR9I	CCNGG	2 cut(s)	148, 189
MvaI	CCWGG	2 cut(s)	148, 189
MwoI	GCNNNNNNNGC	2 cut(s)	184, 218
NlaIII	CATG	3 cut(s)	17, 211, 260
NlaIV	GGNNCC	1 cut(s)	213
PkrI	GCNGC	2 cut(s)	19, 273
Psp6I	CCWGG	2 cut(s)	146, 187
PspGI	CCWGG	2 cut(s)	146, 187
PspN4I	GGNNCC	1 cut(s)	213
PstNI	CAGNNNCTG	1 cut(s)	181
SatI	GCNGC	2 cut(s)	18, 272
ScrFI	CCNGG	2 cut(s)	148, 189
SduI	GDGCHC	1 cut(s)	202
SetI	ASST	4 cut(s)	11, 115, 157, 223
SfaNI	GCATC	1 cut(s)	174
Sse9I	AATT	2 cut(s)	121, 280
SsiI	CCGC	2 cut(s)	18, 37
SspI	AATATT	1 cut(s)	103
SspMI	CTAG	1 cut(s)	218
StyD4I	CCNGG	2 cut(s)	146, 187
TaaI	ACNGT	1 cut(s)	244
TasI	AATT	2 cut(s)	121, 280
TauI	GCSGC	1 cut(s)	20
TscAI	CASTG	1 cut(s)	72
TseI	GCWGC	1 cut(s)	271
TspRI	CASTG	1 cut(s)	72
XspI	CTAG	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.