pycom06g00280

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0000423
Physical Location & Seq
Reverse (-)
252867 .. 254768
1902 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 984 bp
ATGGAGCTTCTGCAGCTGTTTGTGACGGCCTCAATTCCGGTGTTGAAAGTGCTTTTGATAACAGCACTTGGCTCATGTCTTGCTCTTGATCGTGTCGATGTTTTGGGGGAAGTTACTAGAAAGAACGTAAACACTGTTGTATTTTATGTGTTCAATCCTGCTCTCGTGGGTTCCAACCTTGCGCGGACAATTACATACCAAGGCATGGTTAAATTGTGGTTCATGCCAGTGAATATCCTCATCACATTTATAATTGGTTCCGTGCTCGGATGGATTCTCCTCCAATTAACAAGGCCTCCTGCCCGTCTGCGAGGCCTTGTCTTGGGTTGCTGTGCTGCAGGAAATTTGGGTAACTTGCTCCTCATTATAGTCCCAGCAGTCTGTAAAGAAAAAGGGAGCCCGTTTGGAGCTCCTGATGTCTGTCACACATATGCTATGGCTTATGCTTCGCTCTCAATGGCGCTACCTTGTTCAGCTGTCAGGGATTCCTATCTCTTTGCTTTTTGTAATGCAATTGTGTTCATGCTTCAGATAGGAGCCGTTTATTTGTGGTCCTATGTATATAATATTGTGAGGATATCTTCAATAAGGGGCACCCAAGATTCTAATCAGTCCGCCGAGAAGTCCTCCACATCCGACCAAGCAAGTTGCACTGAGCCTCTGCTTTCTTCAAAGGAACGTGTCACAGTTGGTGAAAATCGGGATCAATATGCACTGCCATACACTGCTGTGCCAGAAGAAGAAGCAAAGGCGACGACTTCAAGTAAACTAAAGAAACATATAGGGATGGTGTTTAAAAAGATCAATCTGAAAGCAATATTTGCCTCTTCAACTACTGGAGCGGTATGTCCTTTTGGCACTTTTATATCATTGCGATCCAGATTAAGCGCAATTTTATTGAAAAATTGGGCTAACTTAACCTTTTCCTGGTGTAGGTGGTTGGTTTTGCAATCGGAGTCATCCCTCAGATTAGAAATTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0044425 GO:0051179 GO:0051234 GO:0055085
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mem_trans

Protein Analysis

328

Amino Acids

35.89

Weight (kDa)

9.22

Isoelectric Point (pI)

50.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mem_trans PF03547 10 - 282 1.6e-33 Membrane transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000423)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G76520 AT1G76520 AT1G76530 AT1G76530 AT1G76530
fragaria_vesca FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26311 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26330 FvH4_5g26370 FvH4_5g26370
malus_domestica MD05G1225800.v1.1 MD06G1002600.v1.1 MD06G1002700.v1.1
prunus_persica Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004000_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004100_v2.0.a1 Prupe.5G004300_v2.0.a1
pyrus_communis pycom05g20790 pycom06g00270 pycom06g00280
rosa_chinensis RchiOBHm_Chr7g0217021 RchiOBHm_Chr7g0217081 RchiOBHm_Chr7g0217111 RchiOBHm_Chr7g0217141 RchiOBHm_Chr7g0217181 RchiOBHm_Chr7g0219341
rosa_laevigata RLG00000002504 RLG00000002506 RLG00000002510 RLG00000002512
rosa_multiflora Rmu_sc0001725.1_g000022 Rmu_sc0002460.1_g000002 Rmu_sc0003132.1_g000001 Rmu_sc0007359.1_g000005 Rmu_sc0007359.1_g000009 Rmu_sc0018492.1_g000001 Rmu_sc0039353.1_g000001
rosa_roxburghii Rroxscaffold_3G00242520 Rroxscaffold_3G00242540 Rroxscaffold_3G00242560 Rroxscaffold_3G00242600
rosa_rugosa Rorug07G0165700 Rorug07G0165700 Rorug07G0165800 Rorug07G0165800 Rorug07G0166400 Rorug07G0166500 Rorug07G0166600 Rorug07G0166700 Rorug07G0166800 Rorug07G0166900 Rorug07G0167000 Rorug07G0167000 Rorug07G0167100
rosa_samantha Rh7AG305200 Rh7AG305300 Rh7AG305700 Rh7AG305900 Rh7AG327400 Rh7CG324200 Rh7CG324400 Rh7CG324900 Rh7CG344700 Rh7DG305400 Rh7DG305500 Rh7DG305800 Rh7DG323000
rosa_wichuraiana Rw0G004530 Rw3G011620 Rw7G025930 Rw7G025960 Rw7G025970 Rw7G025990 Rw7G027580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 251
AccB1I GGYRCC 1 cut(s) 593
AccB7I CCANNNNNTGG 1 cut(s) 205
AccBSI CCGCTC 1 cut(s) 842
AccII CGCG 1 cut(s) 184
AciI CCGC 3 cut(s) 184, 615, 842
AclWI GGATC 2 cut(s) 711, 870
AcsI RAATTY 2 cut(s) 343, 975
AcuI CTGAAG 1 cut(s) 512
AfiI CCNNNNNNNGG 4 cut(s) 205, 322, 927, 933
AflIII ACRYGT 1 cut(s) 679
AgsI TTSAA 7 cut(s) 46, 154, 585, 672, 762, 831, 901
AjnI CCWGG 1 cut(s) 926
AleI CACNNNNGTG 1 cut(s) 728
AluBI AGCT 4 cut(s) 7, 16, 410, 476
AluI AGCT 4 cut(s) 7, 16, 410, 476
Alw21I GWGCWC 2 cut(s) 267, 412
AlwI GGATC 2 cut(s) 711, 870
AoxI GGCC 3 cut(s) 27, 293, 313
ApeKI GCWGC 2 cut(s) 13, 335
ApoI RAATTY 2 cut(s) 343, 975
AspLEI GCGC 3 cut(s) 184, 463, 890
AspS9I GGNCC 1 cut(s) 552
AsuHPI GGTGA 1 cut(s) 704
AvaII GGWCC 1 cut(s) 552
BaeGI GKGCMC 1 cut(s) 596
BanI GGYRCC 1 cut(s) 593
BanII GRGCYC 2 cut(s) 401, 412
BauI CACGAG 1 cut(s) 164
Bbv12I GWGCWC 2 cut(s) 267, 412
BbvI GCAGC 2 cut(s) 25, 322
BccI CCATC 2 cut(s) 264, 781
BceAI ACGGC 2 cut(s) 42, 524
BciT130I CCWGG 1 cut(s) 928
BfaI CTAG 1 cut(s) 117
BfmI CTRYAG 2 cut(s) 11, 336
BfoI RGCGCY 1 cut(s) 464
BisI GCNGC 2 cut(s) 14, 336
BlsI GCNGC 2 cut(s) 15, 337
Bme1390I CCNGG 1 cut(s) 928
Bme18I GGWCC 1 cut(s) 552
BmgT120I GGNCC 1 cut(s) 552
BmiI GGNNCC 5 cut(s) 172, 259, 398, 538, 595
BmrFI CCNGG 1 cut(s) 928
BplI GAGNNNNNCTC 2 cut(s) 611, 643
BpmI CTGGAG 1 cut(s) 858
BsaBI GATNNNNATC 2 cut(s) 489, 606
BsaJI CCNNGG 1 cut(s) 199
BsaWI WCCGGW 1 cut(s) 37
BsaXI ACNNNNNCTCC 2 cut(s) 280, 310
Bsc4I CCNNNNNNNGG 4 cut(s) 205, 322, 927, 933
Bse1I ACTGG 2 cut(s) 227, 841
Bse3DI GCAATG 1 cut(s) 869
Bse8I GATNNNNATC 2 cut(s) 489, 606
BseBI CCWGG 1 cut(s) 928
BseDI CCNNGG 1 cut(s) 199
BseGI GGATG 4 cut(s) 275, 632, 792, 959
BseJI GATNNNNATC 2 cut(s) 489, 606
BseLI CCNNNNNNNGG 4 cut(s) 205, 322, 927, 933
BseMI GCAATG 1 cut(s) 869
BseMII CTCAG 2 cut(s) 645, 979
BseNI ACTGG 2 cut(s) 227, 841
BseRI GAGGAG 2 cut(s) 269, 350
BseSI GKGCMC 1 cut(s) 596
BseXI GCAGC 2 cut(s) 25, 322
BseYI CCCAGC 1 cut(s) 373
Bsh1236I CGCG 1 cut(s) 184
BshFI GGCC 3 cut(s) 29, 295, 315
BshNI GGYRCC 1 cut(s) 593
BsiHKAI GWGCWC 2 cut(s) 267, 412
BsiSI CCGG 1 cut(s) 38
BslFI GGGAC 1 cut(s) 356
BslI CCNNNNNNNGG 4 cut(s) 205, 322, 927, 933
BsmFI GGGAC 1 cut(s) 356
BsnI GGCC 3 cut(s) 29, 295, 315
Bsp1286I GDGCHC 4 cut(s) 267, 401, 412, 596
Bsp143I GATC 4 cut(s) 88, 703, 801, 875
BspACI CCGC 3 cut(s) 184, 615, 842
BspANI GGCC 3 cut(s) 29, 295, 315
BspCNI CTCAG 2 cut(s) 646, 978
BspFNI CGCG 1 cut(s) 184
BspLI GGNNCC 5 cut(s) 172, 259, 398, 538, 595
BspMAI CTGCAG 2 cut(s) 15, 340
BspPI GGATC 2 cut(s) 711, 870
BspT107I GGYRCC 1 cut(s) 593
BsrBI CCGCTC 1 cut(s) 842
BsrDI GCAATG 1 cut(s) 869
BsrI ACTGG 2 cut(s) 227, 841
BssECI CCNNGG 1 cut(s) 199
BssMI GATC 4 cut(s) 88, 703, 801, 875
BssSI CACGAG 1 cut(s) 164
BssT1I CCWWGG 1 cut(s) 199
Bst2BI CACGAG 1 cut(s) 164
Bst2UI CCWGG 1 cut(s) 928
Bst4CI ACNGT 2 cut(s) 136, 688
Bst6I CTCTTC 1 cut(s) 832
BstAPI GCANNNNNTGC 1 cut(s) 821
BstDEI CTNAG 2 cut(s) 654, 965
BstENI CCTNNNNNAGG 1 cut(s) 931
BstF5I GGATG 4 cut(s) 275, 632, 792, 959
BstFNI CGCG 1 cut(s) 184
BstH2I RGCGCY 1 cut(s) 464
BstHHI GCGC 3 cut(s) 184, 463, 890
BstKTI GATC 4 cut(s) 91, 706, 804, 878
BstMBI GATC 4 cut(s) 88, 703, 801, 875
BstMWI GCNNNNNNNGC 2 cut(s) 13, 821
BstNI CCWGG 1 cut(s) 928
BstSCI CCNGG 1 cut(s) 926
BstSFI CTRYAG 2 cut(s) 11, 336
BstSLI GKGCMC 1 cut(s) 596
BstUI CGCG 1 cut(s) 184
BstV1I GCAGC 2 cut(s) 25, 322
BsuRI GGCC 3 cut(s) 29, 295, 315
BtsCI GGATG 4 cut(s) 275, 632, 792, 959
BtsI GCAGTG 2 cut(s) 713, 723
BtsIMutI CAGTG 5 cut(s) 132, 234, 651, 713, 723
CfoI GCGC 3 cut(s) 184, 463, 890
Cfr13I GGNCC 1 cut(s) 552
CviAII CATG 4 cut(s) 75, 205, 223, 523
DdeI CTNAG 2 cut(s) 654, 965
DpnI GATC 4 cut(s) 90, 705, 803, 877
DpnII GATC 4 cut(s) 88, 703, 801, 875
DraI TTTAAA 1 cut(s) 796
Eam1104I CTCTTC 1 cut(s) 832
EarI CTCTTC 1 cut(s) 832
EciI GGCGGA 1 cut(s) 604
Ecl136II GAGCTC 1 cut(s) 410
Eco130I CCWWGG 1 cut(s) 199
Eco147I AGGCCT 2 cut(s) 295, 315
Eco24I GRGCYC 2 cut(s) 401, 412
Eco32I GATATC 1 cut(s) 579
Eco47I GGWCC 1 cut(s) 552
Eco53kI GAGCTC 1 cut(s) 410
Eco57I CTGAAG 1 cut(s) 512
EcoICRI GAGCTC 1 cut(s) 410
EcoNI CCTNNNNNAGG 1 cut(s) 931
EcoRII CCWGG 1 cut(s) 926
EcoRV GATATC 1 cut(s) 579
EcoT14I CCWWGG 1 cut(s) 199
EcoT38I GRGCYC 2 cut(s) 401, 412
ErhI CCWWGG 1 cut(s) 199
FaeI CATG 4 cut(s) 78, 208, 226, 526
FaqI GGGAC 1 cut(s) 356
FatI CATG 4 cut(s) 74, 204, 222, 522
FauNDI CATATG 1 cut(s) 430
Fnu4HI GCNGC 2 cut(s) 14, 336
FokI GGATG 4 cut(s) 282, 619, 799, 946
FriOI GRGCYC 2 cut(s) 401, 412
Fsp4HI GCNGC 2 cut(s) 14, 336
FspBI CTAG 1 cut(s) 117
GlaI GCGC 3 cut(s) 183, 462, 889
GluI GCNGC 2 cut(s) 14, 336
GsaI CCCAGC 1 cut(s) 377
GsuI CTGGAG 1 cut(s) 858
HaeII RGCGCY 1 cut(s) 464
HaeIII GGCC 3 cut(s) 29, 295, 315
HapII CCGG 1 cut(s) 38
HhaI GCGC 3 cut(s) 184, 463, 890
Hin1II CATG 4 cut(s) 78, 208, 226, 526
Hin6I GCGC 3 cut(s) 182, 461, 888
HinP1I GCGC 3 cut(s) 182, 461, 888
HinfI GANTC 4 cut(s) 274, 485, 602, 956
HpaII CCGG 1 cut(s) 38
HphI GGTGA 1 cut(s) 704
Hpy166II GTNNAC 2 cut(s) 130, 767
Hpy188I TCNGA 6 cut(s) 269, 531, 637, 810, 955, 968
Hpy188III TCNNGA 4 cut(s) 86, 413, 701, 879
Hpy8I GTNNAC 2 cut(s) 130, 767
Hpy99I CGWCG 1 cut(s) 757
HpyCH4III ACNGT 2 cut(s) 136, 688
HpyCH4IV ACGT 2 cut(s) 126, 679
HpyCH4V TGCA 6 cut(s) 13, 338, 512, 651, 713, 949
HpyF10VI GCNNNNNNNGC 2 cut(s) 13, 821
HpyF3I CTNAG 2 cut(s) 654, 965
HpySE526I ACGT 2 cut(s) 126, 679
Hsp92II CATG 4 cut(s) 78, 208, 226, 526
HspAI GCGC 3 cut(s) 182, 461, 888
Kzo9I GATC 4 cut(s) 88, 703, 801, 875
LmnI GCTCC 7 cut(s) 4, 363, 396, 407, 415, 536, 839
Lsp1109I GCAGC 2 cut(s) 25, 322
MaeI CTAG 1 cut(s) 117
MaeII ACGT 2 cut(s) 126, 679
MaeIII GTNAC 5 cut(s) 22, 112, 350, 422, 682
MalI GATC 4 cut(s) 90, 705, 803, 877
MbiI CCGCTC 1 cut(s) 842
MboI GATC 4 cut(s) 88, 703, 801, 875
MboII GAAGA 5 cut(s) 573, 660, 749, 752, 819
MfeI CAATTG 1 cut(s) 513
MhlI GDGCHC 4 cut(s) 267, 401, 412, 596
MlyI GAGTC 1 cut(s) 965
MmeI TCCRAC 2 cut(s) 198, 660
MseI TTAA 5 cut(s) 210, 287, 795, 884, 917
MslI CAYNNNNRTG 3 cut(s) 227, 429, 728
MspA1I CMGCKG 2 cut(s) 16, 476
MspI CCGG 1 cut(s) 38
MspR9I CCNGG 1 cut(s) 928
MunI CAATTG 1 cut(s) 513
MvaI CCWGG 1 cut(s) 928
MvnI CGCG 1 cut(s) 184
MwoI GCNNNNNNNGC 2 cut(s) 13, 821
NdeI CATATG 1 cut(s) 430
NdeII GATC 4 cut(s) 88, 703, 801, 875
NlaIII CATG 4 cut(s) 78, 208, 226, 526
NlaIV GGNNCC 5 cut(s) 172, 259, 398, 538, 595
NmeAIII GCCGAG 1 cut(s) 643
NmuCI GTSAC 3 cut(s) 22, 422, 682
OliI CACNNNNGTG 1 cut(s) 728
PceI AGGCCT 2 cut(s) 295, 315
PfeI GAWTC 3 cut(s) 274, 485, 602
PflMI CCANNNNNTGG 1 cut(s) 205
PkrI GCNGC 2 cut(s) 15, 337
PleI GAGTC 1 cut(s) 964
PpsI GAGTC 1 cut(s) 964
PsiI TTATAA 1 cut(s) 251
Psp124BI GAGCTC 1 cut(s) 412
Psp6I CCWGG 1 cut(s) 926
PspFI CCCAGC 1 cut(s) 373
PspGI CCWGG 1 cut(s) 926
PspN4I GGNNCC 5 cut(s) 172, 259, 398, 538, 595
PspPI GGNCC 1 cut(s) 552
PstI CTGCAG 2 cut(s) 15, 340
PvuII CAGCTG 2 cut(s) 16, 476
RseI CAYNNNNRTG 3 cut(s) 227, 429, 728
SacI GAGCTC 1 cut(s) 412
SaqAI TTAA 5 cut(s) 210, 287, 795, 884, 917
SatI GCNGC 2 cut(s) 14, 336
Sau3AI GATC 4 cut(s) 88, 703, 801, 875
Sau96I GGNCC 1 cut(s) 552
SchI GAGTC 1 cut(s) 965
ScrFI CCNGG 1 cut(s) 928
SduI GDGCHC 4 cut(s) 267, 401, 412, 596
SfcI CTRYAG 2 cut(s) 11, 336
SinI GGWCC 1 cut(s) 552
SmiMI CAYNNNNRTG 3 cut(s) 227, 429, 728
SseBI AGGCCT 2 cut(s) 295, 315
SsiI CCGC 3 cut(s) 184, 615, 842
SspI AATATT 2 cut(s) 568, 819
SspMI CTAG 1 cut(s) 117
SstI GAGCTC 1 cut(s) 412
StuI AGGCCT 2 cut(s) 295, 315
StyD4I CCNGG 1 cut(s) 926
StyI CCWWGG 1 cut(s) 199
TaaI ACNGT 2 cut(s) 136, 688
TaiI ACGT 2 cut(s) 129, 682
TaqI TCGA 1 cut(s) 96
TfiI GAWTC 3 cut(s) 274, 485, 602
Tru1I TTAA 5 cut(s) 210, 287, 795, 884, 917
Tru9I TTAA 5 cut(s) 210, 287, 795, 884, 917
TscAI CASTG 5 cut(s) 139, 234, 658, 720, 730
TseFI GTSAC 3 cut(s) 22, 422, 682
TseI GCWGC 2 cut(s) 13, 335
Tsp45I GTSAC 3 cut(s) 22, 422, 682
TspDTI ATGAA 2 cut(s) 211, 511
TspGWI ACGGA 1 cut(s) 250
TspRI CASTG 5 cut(s) 139, 234, 658, 720, 730
Van91I CCANNNNNTGG 1 cut(s) 205
VpaK11BI GGWCC 1 cut(s) 552
XagI CCTNNNNNAGG 1 cut(s) 931
XapI RAATTY 2 cut(s) 343, 975
XspI CTAG 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.