transposition, RNA-mediated
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF7903 | PF25475 | 173 - 527 | 7.7e-144 | Domain of unknown function (DUF7903) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 808 |
| Acc65I | GGTACC | 2 cut(s) | 68, 326 |
| AccB1I | GGYRCC | 2 cut(s) | 68, 326 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1004 |
| AccI | GTMKAC | 1 cut(s) | 911 |
| AccII | CGCG | 1 cut(s) | 1280 |
| AciI | CCGC | 8 cut(s) | 42, 57, 300, 599, 699, 1278, 1305, 1424 |
| AclWI | GGATC | 3 cut(s) | 1272, 1283, 1434 |
| AcsI | RAATTY | 2 cut(s) | 715, 1393 |
| AcuI | CTGAAG | 3 cut(s) | 165, 435, 1568 |
| AfaI | GTAC | 5 cut(s) | 70, 328, 632, 858, 947 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1004, 1452, 1464 |
| AflII | CTTAAG | 1 cut(s) | 614 |
| AflIII | ACRYGT | 1 cut(s) | 487 |
| AgsI | TTSAA | 8 cut(s) | 205, 475, 653, 676, 709, 925, 1136, 1486 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1412 |
| AhlI | ACTAGT | 1 cut(s) | 680 |
| AjiI | CACGTC | 2 cut(s) | 1421, 1605 |
| AjnI | CCWGG | 3 cut(s) | 64, 322, 730 |
| AleI | CACNNNNGTG | 1 cut(s) | 142 |
| Alw21I | GWGCWC | 2 cut(s) | 196, 382 |
| Alw26I | GTCTC | 4 cut(s) | 928, 1192, 1213, 1463 |
| AlwI | GGATC | 3 cut(s) | 1272, 1283, 1434 |
| AoxI | GGCC | 4 cut(s) | 167, 437, 872, 1316 |
| ApeKI | GCWGC | 8 cut(s) | 44, 47, 187, 302, 305, 415, 457, 1561 |
| ApoI | RAATTY | 2 cut(s) | 715, 1393 |
| AseI | ATTAAT | 1 cut(s) | 1272 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1330 |
| Asp718I | GGTACC | 2 cut(s) | 68, 326 |
| AspLEI | GCGC | 3 cut(s) | 299, 569, 809 |
| AspS9I | GGNCC | 3 cut(s) | 1192, 1455, 1492 |
| AsuHPI | GGTGA | 3 cut(s) | 593, 713, 1367 |
| AsuII | TTCGAA | 1 cut(s) | 1017 |
| AvaII | GGWCC | 3 cut(s) | 1192, 1455, 1492 |
| BanI | GGYRCC | 2 cut(s) | 68, 326 |
| BauI | CACGAG | 2 cut(s) | 51, 309 |
| BbsI | GAAGAC | 2 cut(s) | 4, 1560 |
| Bbv12I | GWGCWC | 2 cut(s) | 196, 382 |
| BbvI | GCAGC | 8 cut(s) | 31, 34, 174, 289, 292, 427, 444, 1573 |
| BccI | CCATC | 5 cut(s) | 285, 555, 902, 1308, 1352 |
| BceAI | ACGGC | 2 cut(s) | 554, 1077 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1241, 1275 |
| BciT130I | CCWGG | 3 cut(s) | 66, 324, 732 |
| BcoDI | GTCTC | 4 cut(s) | 928, 1192, 1213, 1463 |
| BcuI | ACTAGT | 1 cut(s) | 680 |
| BfaI | CTAG | 4 cut(s) | 27, 681, 686, 843 |
| BfmI | CTRYAG | 3 cut(s) | 94, 352, 1118 |
| BfrI | CTTAAG | 1 cut(s) | 614 |
| BglII | AGATCT | 1 cut(s) | 1231 |
| BisI | GCNGC | 9 cut(s) | 45, 48, 188, 300, 303, 306, 416, 458, 1562 |
| BlsI | GCNGC | 9 cut(s) | 46, 49, 189, 301, 304, 307, 417, 459, 1563 |
| BmcAI | AGTACT | 1 cut(s) | 858 |
| Bme1390I | CCNGG | 3 cut(s) | 66, 324, 732 |
| Bme18I | GGWCC | 3 cut(s) | 1192, 1455, 1492 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1412 |
| BmgBI | CACGTC | 2 cut(s) | 1421, 1605 |
| BmgT120I | GGNCC | 3 cut(s) | 1192, 1455, 1492 |
| BmiI | GGNNCC | 5 cut(s) | 70, 328, 728, 1456, 1493 |
| BmrFI | CCNGG | 3 cut(s) | 66, 324, 732 |
| BmrI | ACTGGG | 1 cut(s) | 1461 |
| BmsI | GCATC | 3 cut(s) | 1060, 1194, 1239 |
| BmuI | ACTGGG | 1 cut(s) | 1461 |
| BpiI | GAAGAC | 2 cut(s) | 4, 1560 |
| BpmI | CTGGAG | 1 cut(s) | 753 |
| Bpu14I | TTCGAA | 1 cut(s) | 1017 |
| BpuEI | CTTGAG | 1 cut(s) | 1603 |
| Bsa29I | ATCGAT | 2 cut(s) | 289, 1429 |
| BsaJI | CCNNGG | 3 cut(s) | 76, 722, 730 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1004, 1452, 1464 |
| Bse1I | ACTGG | 3 cut(s) | 259, 529, 1456 |
| Bse3DI | GCAATG | 2 cut(s) | 170, 440 |
| BseBI | CCWGG | 3 cut(s) | 66, 324, 732 |
| BseCI | ATCGAT | 2 cut(s) | 289, 1429 |
| BseDI | CCNNGG | 3 cut(s) | 76, 722, 730 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1004, 1452, 1464 |
| BseMI | GCAATG | 2 cut(s) | 170, 440 |
| BseMII | CTCAG | 3 cut(s) | 630, 1187, 1530 |
| BseNI | ACTGG | 3 cut(s) | 259, 529, 1456 |
| BseRI | GAGGAG | 1 cut(s) | 599 |
| BseXI | GCAGC | 8 cut(s) | 31, 34, 174, 289, 292, 427, 444, 1573 |
| Bsh1236I | CGCG | 1 cut(s) | 1280 |
| Bsh1285I | CGRYCG | 1 cut(s) | 61 |
| BshFI | GGCC | 4 cut(s) | 169, 439, 874, 1318 |
| BshNI | GGYRCC | 2 cut(s) | 68, 326 |
| BshVI | ATCGAT | 2 cut(s) | 289, 1429 |
| BsiEI | CGRYCG | 1 cut(s) | 61 |
| BsiHKAI | GWGCWC | 2 cut(s) | 196, 382 |
| BslFI | GGGAC | 3 cut(s) | 980, 1468, 1586 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1004, 1452, 1464 |
| BsmAI | GTCTC | 4 cut(s) | 928, 1192, 1213, 1463 |
| BsmBI | CGTCTC | 1 cut(s) | 928 |
| BsmFI | GGGAC | 3 cut(s) | 980, 1468, 1586 |
| BsmI | GAATGC | 2 cut(s) | 1257, 1522 |
| BsnI | GGCC | 4 cut(s) | 169, 439, 874, 1318 |
| Bsp119I | TTCGAA | 1 cut(s) | 1017 |
| Bsp1286I | GDGCHC | 2 cut(s) | 196, 382 |
| Bsp1407I | TGTACA | 1 cut(s) | 945 |
| Bsp143I | GATC | 4 cut(s) | 1231, 1264, 1288, 1426 |
| BspACI | CCGC | 8 cut(s) | 42, 57, 300, 599, 699, 1278, 1305, 1424 |
| BspANI | GGCC | 4 cut(s) | 169, 439, 874, 1318 |
| BspCNI | CTCAG | 3 cut(s) | 631, 1188, 1531 |
| BspDI | ATCGAT | 2 cut(s) | 289, 1429 |
| BspFNI | CGCG | 1 cut(s) | 1280 |
| BspLI | GGNNCC | 5 cut(s) | 70, 328, 728, 1456, 1493 |
| BspPI | GGATC | 3 cut(s) | 1272, 1283, 1434 |
| BspT104I | TTCGAA | 1 cut(s) | 1017 |
| BspT107I | GGYRCC | 2 cut(s) | 68, 326 |
| BspTI | CTTAAG | 1 cut(s) | 614 |
| BsrDI | GCAATG | 2 cut(s) | 170, 440 |
| BsrGI | TGTACA | 1 cut(s) | 945 |
| BsrI | ACTGG | 3 cut(s) | 259, 529, 1456 |
| BssECI | CCNNGG | 3 cut(s) | 76, 722, 730 |
| BssMI | GATC | 4 cut(s) | 1231, 1264, 1288, 1426 |
| BssSI | CACGAG | 2 cut(s) | 51, 309 |
| BssT1I | CCWWGG | 1 cut(s) | 722 |
| Bst2BI | CACGAG | 2 cut(s) | 51, 309 |
| Bst2UI | CCWGG | 3 cut(s) | 66, 324, 732 |
| Bst4CI | ACNGT | 2 cut(s) | 10, 1459 |
| Bst6I | CTCTTC | 1 cut(s) | 1506 |
| BstAFI | CTTAAG | 1 cut(s) | 614 |
| BstAUI | TGTACA | 1 cut(s) | 945 |
| BstBI | TTCGAA | 1 cut(s) | 1017 |
| BstC8I | GCNNGC | 5 cut(s) | 192, 462, 759, 840, 1528 |
| BstDEI | CTNAG | 4 cut(s) | 639, 866, 1196, 1539 |
| BstDSI | CCRYGG | 1 cut(s) | 76 |
| BstFNI | CGCG | 1 cut(s) | 1280 |
| BstHHI | GCGC | 3 cut(s) | 299, 569, 809 |
| BstKTI | GATC | 4 cut(s) | 1234, 1267, 1291, 1429 |
| BstMAI | GTCTC | 4 cut(s) | 928, 1192, 1213, 1463 |
| BstMBI | GATC | 4 cut(s) | 1231, 1264, 1288, 1426 |
| BstMCI | CGRYCG | 1 cut(s) | 61 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 44, 99, 305, 835 |
| BstNI | CCWGG | 3 cut(s) | 66, 324, 732 |
| BstNSI | RCATGY | 3 cut(s) | 464, 491, 1561 |
| BstSCI | CCNGG | 3 cut(s) | 64, 322, 730 |
| BstSFI | CTRYAG | 3 cut(s) | 94, 352, 1118 |
| BstUI | CGCG | 1 cut(s) | 1280 |
| BstV1I | GCAGC | 8 cut(s) | 31, 34, 174, 289, 292, 427, 444, 1573 |
| BstV2I | GAAGAC | 2 cut(s) | 4, 1560 |
| BstX2I | RGATCY | 3 cut(s) | 1231, 1264, 1288 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 144, 1189 |
| BstYI | RGATCY | 3 cut(s) | 1231, 1264, 1288 |
| Bsu15I | ATCGAT | 2 cut(s) | 289, 1429 |
| BsuRI | GGCC | 4 cut(s) | 169, 439, 874, 1318 |
| BsuTUI | ATCGAT | 2 cut(s) | 289, 1429 |
| BtgI | CCRYGG | 1 cut(s) | 76 |
| BtrI | CACGTC | 2 cut(s) | 1421, 1605 |
| BtsI | GCAGTG | 1 cut(s) | 33 |
| BtsIMutI | CAGTG | 2 cut(s) | 33, 636 |
| Cac8I | GCNNGC | 5 cut(s) | 192, 462, 759, 840, 1528 |
| CfoI | GCGC | 3 cut(s) | 299, 569, 809 |
| Cfr13I | GGNCC | 3 cut(s) | 1192, 1455, 1492 |
| ClaI | ATCGAT | 2 cut(s) | 289, 1429 |
| Csp6I | GTAC | 5 cut(s) | 69, 327, 631, 857, 946 |
| CviQI | GTAC | 5 cut(s) | 69, 327, 631, 857, 946 |
| DdeI | CTNAG | 4 cut(s) | 639, 866, 1196, 1539 |
| DpnI | GATC | 4 cut(s) | 1233, 1266, 1290, 1428 |
| DpnII | GATC | 4 cut(s) | 1231, 1264, 1288, 1426 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1412 |
| Eam1104I | CTCTTC | 1 cut(s) | 1506 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1412 |
| EarI | CTCTTC | 1 cut(s) | 1506 |
| EciI | GGCGGA | 1 cut(s) | 588 |
| Eco130I | CCWWGG | 1 cut(s) | 722 |
| Eco147I | AGGCCT | 1 cut(s) | 874 |
| Eco47I | GGWCC | 3 cut(s) | 1192, 1455, 1492 |
| Eco57I | CTGAAG | 3 cut(s) | 165, 435, 1568 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1492 |
| EcoRI | GAATTC | 1 cut(s) | 715 |
| EcoRII | CCWGG | 3 cut(s) | 64, 322, 730 |
| EcoT14I | CCWWGG | 1 cut(s) | 722 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| ErhI | CCWWGG | 1 cut(s) | 722 |
| Esp3I | CGTCTC | 1 cut(s) | 928 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 97, 129, 197, 229, 250, 282, 467, 499 |
| FaqI | GGGAC | 3 cut(s) | 980, 1468, 1586 |
| FauI | CCCGC | 2 cut(s) | 49, 1298 |
| FblI | GTMKAC | 1 cut(s) | 911 |
| Fnu4HI | GCNGC | 9 cut(s) | 45, 48, 188, 300, 303, 306, 416, 458, 1562 |
| Fsp4HI | GCNGC | 9 cut(s) | 45, 48, 188, 300, 303, 306, 416, 458, 1562 |
| FspAI | RTGCGCAY | 1 cut(s) | 808 |
| FspBI | CTAG | 4 cut(s) | 27, 681, 686, 843 |
| FspI | TGCGCA | 1 cut(s) | 808 |
| GlaI | GCGC | 3 cut(s) | 298, 568, 808 |
| GluI | GCNGC | 9 cut(s) | 45, 48, 188, 300, 303, 306, 416, 458, 1562 |
| GsuI | CTGGAG | 1 cut(s) | 753 |
| HaeIII | GGCC | 4 cut(s) | 169, 439, 874, 1318 |
| HhaI | GCGC | 3 cut(s) | 299, 569, 809 |
| Hin6I | GCGC | 3 cut(s) | 297, 567, 807 |
| HinP1I | GCGC | 3 cut(s) | 297, 567, 807 |
| HinfI | GANTC | 8 cut(s) | 158, 201, 471, 1055, 1141, 1221, 1331, 1596 |
| HphI | GGTGA | 3 cut(s) | 593, 713, 1367 |
| Hpy166II | GTNNAC | 3 cut(s) | 912, 948, 1165 |
| Hpy8I | GTNNAC | 3 cut(s) | 912, 948, 1165 |
| HpyCH4III | ACNGT | 2 cut(s) | 10, 1459 |
| HpyCH4IV | ACGT | 4 cut(s) | 129, 513, 1420, 1604 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 44, 99, 305, 835 |
| HpyF3I | CTNAG | 4 cut(s) | 639, 866, 1196, 1539 |
| HpySE526I | ACGT | 4 cut(s) | 129, 513, 1420, 1604 |
| HspAI | GCGC | 3 cut(s) | 297, 567, 807 |
| KpnI | GGTACC | 2 cut(s) | 72, 330 |
| Kzo9I | GATC | 4 cut(s) | 1231, 1264, 1288, 1426 |
| LmnI | GCTCC | 1 cut(s) | 43 |
| Lsp1109I | GCAGC | 8 cut(s) | 31, 34, 174, 289, 292, 427, 444, 1573 |
| LweI | GCATC | 3 cut(s) | 1060, 1194, 1239 |
| MaeI | CTAG | 4 cut(s) | 27, 681, 686, 843 |
| MaeII | ACGT | 4 cut(s) | 129, 513, 1420, 1604 |
| MaeIII | GTNAC | 5 cut(s) | 125, 1151, 1225, 1459, 1503 |
| MalI | GATC | 4 cut(s) | 1233, 1266, 1290, 1428 |
| MboI | GATC | 4 cut(s) | 1231, 1264, 1288, 1426 |
| MboII | GAAGA | 8 cut(s) | 4, 270, 540, 665, 765, 1326, 1523, 1565 |
| MflI | RGATCY | 3 cut(s) | 1231, 1264, 1288 |
| MhlI | GDGCHC | 2 cut(s) | 196, 382 |
| MluCI | AATT | 6 cut(s) | 593, 715, 1002, 1273, 1393, 1473 |
| MlyI | GAGTC | 1 cut(s) | 1215 |
| MnlI | CCTC | 7 cut(s) | 92, 159, 350, 429, 577, 783, 864 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1330 |
| MseI | TTAA | 6 cut(s) | 609, 615, 780, 882, 1272, 1373 |
| MslI | CAYNNNNRTG | 5 cut(s) | 142, 289, 339, 559, 1160 |
| MspA1I | CMGCKG | 3 cut(s) | 44, 302, 1564 |
| MspCI | CTTAAG | 1 cut(s) | 614 |
| MspR9I | CCNGG | 3 cut(s) | 66, 324, 732 |
| Mva1269I | GAATGC | 2 cut(s) | 1257, 1522 |
| MvaI | CCWGG | 3 cut(s) | 66, 324, 732 |
| MvnI | CGCG | 1 cut(s) | 1280 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 44, 99, 305, 835 |
| NdeII | GATC | 4 cut(s) | 1231, 1264, 1288, 1426 |
| NlaIV | GGNNCC | 5 cut(s) | 70, 328, 728, 1456, 1493 |
| NmuCI | GTSAC | 1 cut(s) | 1225 |
| NsbI | TGCGCA | 1 cut(s) | 808 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| NspI | RCATGY | 3 cut(s) | 464, 491, 1561 |
| NspV | TTCGAA | 1 cut(s) | 1017 |
| OliI | CACNNNNGTG | 1 cut(s) | 142 |
| PaeI | GCATGC | 1 cut(s) | 464 |
| PceI | AGGCCT | 1 cut(s) | 874 |
| PciI | ACATGT | 1 cut(s) | 487 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 58, 316, 1426 |
| PctI | GAATGC | 2 cut(s) | 1257, 1522 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1330 |
| PfeI | GAWTC | 7 cut(s) | 158, 201, 471, 1055, 1141, 1331, 1596 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1004 |
| PkrI | GCNGC | 9 cut(s) | 46, 49, 189, 301, 304, 307, 417, 459, 1563 |
| PleI | GAGTC | 1 cut(s) | 1215 |
| PpsI | GAGTC | 1 cut(s) | 1215 |
| PpuMI | RGGWCCY | 1 cut(s) | 1492 |
| PscI | ACATGT | 1 cut(s) | 487 |
| PshBI | ATTAAT | 1 cut(s) | 1272 |
| Psp5II | RGGWCCY | 1 cut(s) | 1492 |
| Psp6I | CCWGG | 3 cut(s) | 64, 322, 730 |
| PspGI | CCWGG | 3 cut(s) | 64, 322, 730 |
| PspN4I | GGNNCC | 5 cut(s) | 70, 328, 728, 1456, 1493 |
| PspPI | GGNCC | 3 cut(s) | 1192, 1455, 1492 |
| PspPPI | RGGWCCY | 1 cut(s) | 1492 |
| PsuI | RGATCY | 3 cut(s) | 1231, 1264, 1288 |
| PvuII | CAGCTG | 1 cut(s) | 1564 |
| RsaI | GTAC | 5 cut(s) | 70, 328, 632, 858, 947 |
| RsaNI | GTAC | 5 cut(s) | 69, 327, 631, 857, 946 |
| RseI | CAYNNNNRTG | 5 cut(s) | 142, 289, 339, 559, 1160 |
| SaqAI | TTAA | 6 cut(s) | 609, 615, 780, 882, 1272, 1373 |
| SatI | GCNGC | 9 cut(s) | 45, 48, 188, 300, 303, 306, 416, 458, 1562 |
| Sau3AI | GATC | 4 cut(s) | 1231, 1264, 1288, 1426 |
| Sau96I | GGNCC | 3 cut(s) | 1192, 1455, 1492 |
| ScaI | AGTACT | 1 cut(s) | 858 |
| SchI | GAGTC | 1 cut(s) | 1215 |
| ScrFI | CCNGG | 3 cut(s) | 66, 324, 732 |
| SduI | GDGCHC | 2 cut(s) | 196, 382 |
| SfaNI | GCATC | 3 cut(s) | 1060, 1194, 1239 |
| SfcI | CTRYAG | 3 cut(s) | 94, 352, 1118 |
| SfuI | TTCGAA | 1 cut(s) | 1017 |
| SinI | GGWCC | 3 cut(s) | 1192, 1455, 1492 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 142, 289, 339, 559, 1160 |
| SmlI | CTYRAG | 2 cut(s) | 614, 1582 |
| SmoI | CTYRAG | 2 cut(s) | 614, 1582 |
| SpeI | ACTAGT | 1 cut(s) | 680 |
| SphI | GCATGC | 1 cut(s) | 464 |
| Sse9I | AATT | 6 cut(s) | 593, 715, 1002, 1273, 1393, 1473 |
| SseBI | AGGCCT | 1 cut(s) | 874 |
| SsiI | CCGC | 8 cut(s) | 42, 57, 300, 599, 699, 1278, 1305, 1424 |
| SspMI | CTAG | 4 cut(s) | 27, 681, 686, 843 |
| StuI | AGGCCT | 1 cut(s) | 874 |
| StyD4I | CCNGG | 3 cut(s) | 64, 322, 730 |
| StyI | CCWWGG | 1 cut(s) | 722 |
| TaaI | ACNGT | 2 cut(s) | 10, 1459 |
| TaiI | ACGT | 4 cut(s) | 132, 516, 1423, 1607 |
| TaqI | TCGA | 6 cut(s) | 152, 289, 422, 1017, 1058, 1429 |
| TasI | AATT | 6 cut(s) | 593, 715, 1002, 1273, 1393, 1473 |
| TatI | WGTACW | 3 cut(s) | 630, 856, 945 |
| TauI | GCSGC | 1 cut(s) | 302 |
| TfiI | GAWTC | 7 cut(s) | 158, 201, 471, 1055, 1141, 1331, 1596 |
| Tru1I | TTAA | 6 cut(s) | 609, 615, 780, 882, 1272, 1373 |
| Tru9I | TTAA | 6 cut(s) | 609, 615, 780, 882, 1272, 1373 |
| TscAI | CASTG | 2 cut(s) | 40, 643 |
| TseFI | GTSAC | 1 cut(s) | 1225 |
| TseI | GCWGC | 8 cut(s) | 44, 47, 187, 302, 305, 415, 457, 1561 |
| Tsp45I | GTSAC | 1 cut(s) | 1225 |
| TspDTI | ATGAA | 7 cut(s) | 708, 810, 815, 954, 1115, 1161, 1386 |
| TspGWI | ACGGA | 2 cut(s) | 65, 1327 |
| TspRI | CASTG | 2 cut(s) | 40, 643 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1004 |
| Vha464I | CTTAAG | 1 cut(s) | 614 |
| VpaK11BI | GGWCC | 3 cut(s) | 1192, 1455, 1492 |
| VspI | ATTAAT | 1 cut(s) | 1272 |
| XapI | RAATTY | 2 cut(s) | 715, 1393 |
| XbaI | TCTAGA | 1 cut(s) | 685 |
| XceI | RCATGY | 3 cut(s) | 464, 491, 1561 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 141 |
| XmiI | GTMKAC | 1 cut(s) | 911 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1330 |
| XspI | CTAG | 4 cut(s) | 27, 681, 686, 843 |
| ZrmI | AGTACT | 1 cut(s) | 858 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |