Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001158

Physical Location & Seq

Genomic Coordinates Reverse (-)

397401 .. 398246

Gene Structure 846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGAAACAGTTCAAGGAGTACATAGAAAAGCTGAAAGGAATTGTTGGAGAGAAGAAAACAAACTTCATCATAAAAAACAGTCTGATTTTTGTGGTAGCCGGCAGCAACGATATTTCTAATACCTATTTTCTTAGCGGTCTTAGGAGATTGGAGTATGACGTTCCTTCTTACACCGACTTCATCCTCAAACATGCCTCTGATTTCGTCAAGGACTTGTATGGATTGGGGGCACGAAGAATAGGCGTACTAAGTGCACCACCTATCGGATGTGTACCATCTCAACGAACGTTAAATGGAGGCATACAAAGAGATTGTGACGAAAAGCAAAACCAAGCATGCCAGCTGTTCAATTCCAAGCTCTCTGTGGAGATGGATCGCCTTAACAAAAACCTGCCAAACTCGAGAATGGTCTACATTGACATCTATAATCCTCTACTCGATATCATAAAAAACCCCGCTAAATACGGGTTTGAAGTTGCGAATAAAGGGTGTTGTGGAACTGGCCTTATTGAAGTAACAAAACTGTGCAATCAGCTCCAACCAGCAGGGGTCTGCACACATGACTCTAAGTACGTTTTCTGGGACAGCTACCATCCAACCGAAAGAGCATACAAGATCATTGTGAAGCAGATTCTCGACAATTATTCCAGCCGCTTCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

221

Amino Acids

25.0

Weight (kDa)

8.97

Isoelectric Point (pI)

34.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	7 - 211	3.1e-22	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58520 AT1G58525 AT1G58725 AT1G59030 AT1G59406 AT1G75880 AT1G75880 AT1G75890 AT1G75890 AT1G75890 AT1G75900 AT3G14820 AT3G43550 AT3G43570 AT5G42170
fragaria_vesca	FvH4_2g38112 FvH4_2g38120
malus_domestica	MD08G1009700.v1.1 MD08G1009800.v1.1 MD15G1008800.v1.1 MD15G1008900.v1.1 MD15G1009000.v1.1 MD15G1009100.v1.1 MD15G1009500.v1.1 MD15G1009600.v1.1
prunus_persica	Prupe.1G361800_v2.0.a1 Prupe.1G361800_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G362000_v2.0.a1 Prupe.1G362100_v2.0.a1
pyrus_communis	pycom08g00820 pycom08g00830 pycom15g00730 pycom15g00740 pycom15g00750 pycom15g00760 pycom15g00770
rosa_chinensis	RchiOBHm_Chr6g0303381 RchiOBHm_Chr6g0303411
rosa_laevigata	RLG00000011087 RLG00000011088
rosa_multiflora	Rmu_sc0002586.1_g000041 Rmu_ssc0000114.1_g000055 Rmu_ssc0000114.1_g000059
rosa_roxburghii	Rroxscaffold_7G00164790 Rroxscaffold_7G00164830
rosa_rugosa	Rorug06G0321000
rosa_samantha	Rh6AG435300 Rh6AG435400 Rh6CG447300 Rh6CG447500 Rh6DG434100 Rh6DG434200
rosa_wichuraiana	Rw6G037690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	399
AccI	GTMKAC	1 cut(s)	411
AciI	CCGC	3 cut(s)	135, 456, 652
AclI	AACGTT	1 cut(s)	287
AclWI	GGATC	1 cut(s)	381
AfaI	GTAC	4 cut(s)	20, 246, 273, 572
AfiI	CCNNNNNNNGG	1 cut(s)	263
AgsI	TTSAA	4 cut(s)	13, 349, 473, 512
AluBI	AGCT	5 cut(s)	31, 343, 358, 535, 588
AluI	AGCT	5 cut(s)	31, 343, 358, 535, 588
Alw21I	GWGCWC	1 cut(s)	256
Alw44I	GTGCAC	1 cut(s)	252
AlwI	GGATC	1 cut(s)	381
Ama87I	CYCGRG	1 cut(s)	400
AoxI	GGCC	1 cut(s)	502
ApaLI	GTGCAC	1 cut(s)	252
ApeKI	GCWGC	1 cut(s)	102
Asp700I	GAANNNNTTC	1 cut(s)	8
AvaI	CYCGRG	1 cut(s)	400
BaeGI	GKGCMC	2 cut(s)	232, 256
Bbv12I	GWGCWC	1 cut(s)	256
BbvI	GCAGC	1 cut(s)	114
BccI	CCATC	3 cut(s)	283, 364, 600
BfuAI	ACCTGC	1 cut(s)	399
BisI	GCNGC	2 cut(s)	103, 652
BlsI	GCNGC	2 cut(s)	104, 653
BmeT110I	CYCGRG	1 cut(s)	400
Bsc4I	CCNNNNNNNGG	1 cut(s)	263
Bse118I	RCCGGY	1 cut(s)	98
Bse1I	ACTGG	1 cut(s)	505
BseGI	GGATG	3 cut(s)	180, 272, 592
BseLI	CCNNNNNNNGG	1 cut(s)	263
BseNI	ACTGG	1 cut(s)	505
BseSI	GKGCMC	2 cut(s)	232, 256
BseXI	GCAGC	1 cut(s)	114
BsgI	GTGCAG	1 cut(s)	538
BshFI	GGCC	1 cut(s)	504
BsiHKAI	GWGCWC	1 cut(s)	256
BsiHKCI	CYCGRG	1 cut(s)	400
BsiSI	CCGG	1 cut(s)	99
BslFI	GGGAC	1 cut(s)	596
BslI	CCNNNNNNNGG	1 cut(s)	263
BsmFI	GGGAC	1 cut(s)	596
BsnI	GGCC	1 cut(s)	504
BsoBI	CYCGRG	1 cut(s)	400
Bsp1286I	GDGCHC	2 cut(s)	232, 256
Bsp143I	GATC	2 cut(s)	373, 615
BspACI	CCGC	3 cut(s)	135, 456, 652
BspANI	GGCC	1 cut(s)	504
BspMI	ACCTGC	1 cut(s)	399
BspPI	GGATC	1 cut(s)	381
BsrFI	RCCGGY	1 cut(s)	98
BsrI	ACTGG	1 cut(s)	505
BssAI	RCCGGY	1 cut(s)	98
BssMI	GATC	2 cut(s)	373, 615
Bst4CI	ACNGT	3 cut(s)	9, 80, 525
BstC8I	GCNNGC	3 cut(s)	100, 337, 341
BstDEI	CTNAG	4 cut(s)	131, 140, 248, 567
BstF5I	GGATG	3 cut(s)	180, 272, 592
BstKTI	GATC	2 cut(s)	376, 618
BstMBI	GATC	2 cut(s)	373, 615
BstNSI	RCATGY	2 cut(s)	194, 339
BstSLI	GKGCMC	2 cut(s)	232, 256
BstV1I	GCAGC	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	504
BtsCI	GGATG	3 cut(s)	180, 272, 592
BveI	ACCTGC	1 cut(s)	399
Cac8I	GCNNGC	3 cut(s)	100, 337, 341
Cfr10I	RCCGGY	1 cut(s)	98
Csp6I	GTAC	4 cut(s)	19, 245, 272, 571
CviAII	CATG	3 cut(s)	191, 336, 560
CviJI	RGCY	8 cut(s)	31, 98, 343, 358, 504, 535, 588, 651
CviKI_1	RGCY	8 cut(s)	31, 98, 343, 358, 504, 535, 588, 651
CviQI	GTAC	4 cut(s)	19, 245, 272, 571
DdeI	CTNAG	4 cut(s)	131, 140, 248, 567
DpnI	GATC	2 cut(s)	375, 617
DpnII	GATC	2 cut(s)	373, 615
Eco32I	GATATC	1 cut(s)	442
Eco88I	CYCGRG	1 cut(s)	400
EcoRV	GATATC	1 cut(s)	442
FaeI	CATG	3 cut(s)	194, 339, 563
FaqI	GGGAC	1 cut(s)	596
FatI	CATG	3 cut(s)	190, 335, 559
FauI	CCCGC	1 cut(s)	463
FblI	GTMKAC	1 cut(s)	411
Fnu4HI	GCNGC	2 cut(s)	103, 652
FokI	GGATG	3 cut(s)	167, 279, 579
Fsp4HI	GCNGC	2 cut(s)	103, 652
GluI	GCNGC	2 cut(s)	103, 652
HaeIII	GGCC	1 cut(s)	504
HapII	CCGG	1 cut(s)	99
Hin1II	CATG	3 cut(s)	194, 339, 563
HinfI	GANTC	2 cut(s)	563, 631
HpaII	CCGG	1 cut(s)	99
Hpy166II	GTNNAC	3 cut(s)	254, 272, 412
Hpy188I	TCNGA	3 cut(s)	84, 199, 266
Hpy188III	TCNNGA	2 cut(s)	402, 635
Hpy8I	GTNNAC	3 cut(s)	254, 272, 412
HpyAV	CCTTC	1 cut(s)	174
HpyCH4III	ACNGT	3 cut(s)	9, 80, 525
HpyCH4IV	ACGT	3 cut(s)	159, 287, 573
HpyCH4V	TGCA	3 cut(s)	254, 528, 555
HpyF3I	CTNAG	4 cut(s)	131, 140, 248, 567
HpySE526I	ACGT	3 cut(s)	159, 287, 573
Hsp92II	CATG	3 cut(s)	194, 339, 563
KroI	GCCGGC	1 cut(s)	98
KroNI	GCCGGC	1 cut(s)	100
Kzo9I	GATC	2 cut(s)	373, 615
LmnI	GCTCC	1 cut(s)	540
LpnPI	CCDG	7 cut(s)	112, 353, 404, 486, 531, 555, 565
Lsp1109I	GCAGC	1 cut(s)	114
MaeII	ACGT	3 cut(s)	159, 287, 573
MaeIII	GTNAC	2 cut(s)	314, 514
MalI	GATC	2 cut(s)	375, 617
MboI	GATC	2 cut(s)	373, 615
MboII	GAAGA	3 cut(s)	64, 246, 649
MhlI	GDGCHC	2 cut(s)	232, 256
MluCI	AATT	3 cut(s)	39, 349, 640
MlyI	GAGTC	1 cut(s)	557
MmeI	TCCRAC	3 cut(s)	25, 562, 620
MnlI	CCTC	4 cut(s)	194, 205, 290, 441
MroNI	GCCGGC	1 cut(s)	98
MroXI	GAANNNNTTC	1 cut(s)	8
MseI	TTAA	2 cut(s)	290, 381
MspA1I	CMGCKG	1 cut(s)	343
MspI	CCGG	1 cut(s)	99
NaeI	GCCGGC	1 cut(s)	100
NdeII	GATC	2 cut(s)	373, 615
NgoMIV	GCCGGC	1 cut(s)	98
NlaIII	CATG	3 cut(s)	194, 339, 563
NmuCI	GTSAC	1 cut(s)	314
NspI	RCATGY	2 cut(s)	194, 339
PaeI	GCATGC	1 cut(s)	339
PaeR7I	CTCGAG	1 cut(s)	400
PdiI	GCCGGC	1 cut(s)	100
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	1 cut(s)	631
PkrI	GCNGC	2 cut(s)	104, 653
PleI	GAGTC	1 cut(s)	557
PpsI	GAGTC	1 cut(s)	557
Psp1406I	AACGTT	1 cut(s)	287
PvuII	CAGCTG	1 cut(s)	343
RsaI	GTAC	4 cut(s)	20, 246, 273, 572
RsaNI	GTAC	4 cut(s)	19, 245, 272, 571
SaqAI	TTAA	2 cut(s)	290, 381
SatI	GCNGC	2 cut(s)	103, 652
Sau3AI	GATC	2 cut(s)	373, 615
SchI	GAGTC	1 cut(s)	557
SduI	GDGCHC	2 cut(s)	232, 256
Sfr274I	CTCGAG	1 cut(s)	400
SlaI	CTCGAG	1 cut(s)	400
SmlI	CTYRAG	1 cut(s)	400
SmoI	CTYRAG	1 cut(s)	400
SphI	GCATGC	1 cut(s)	339
Sse9I	AATT	3 cut(s)	39, 349, 640
SsiI	CCGC	3 cut(s)	135, 456, 652
TaaI	ACNGT	3 cut(s)	9, 80, 525
TaiI	ACGT	3 cut(s)	162, 290, 576
TaqI	TCGA	3 cut(s)	401, 438, 636
TasI	AATT	3 cut(s)	39, 349, 640
TatI	WGTACW	1 cut(s)	18
TauI	GCSGC	1 cut(s)	654
TfiI	GAWTC	1 cut(s)	631
Tru1I	TTAA	2 cut(s)	290, 381
Tru9I	TTAA	2 cut(s)	290, 381
TseFI	GTSAC	1 cut(s)	314
TseI	GCWGC	1 cut(s)	102
Tsp45I	GTSAC	1 cut(s)	314
TspDTI	ATGAA	3 cut(s)	17, 55, 169
VneI	GTGCAC	1 cut(s)	252
XceI	RCATGY	2 cut(s)	194, 339
XcmI	CCANNNNNNNNNTGG	1 cut(s)	361
XhoI	CTCGAG	1 cut(s)	400
XmiI	GTMKAC	1 cut(s)	411
XmnI	GAANNNNTTC	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.