Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001158

Physical Location & Seq

Genomic Coordinates Reverse (-)

415511 .. 416827

Gene Structure 1317 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGACGGCCCAGATTGTGGCAGTTACACCACTGTCCGATCAACTGCGGCAATTTGAAGAGTACATAGGAAAGCTCAAAGGAATTGTGGGAGAAGAGAGAGCAAACTTCATCTTAGCCAACAGTCTATGTTTTGTGGTAGCAAGCAGCAACGATATTGCCAATACATACTTTGTTGCCGGCGTTAGGAAGTTAGAGTACGATGTTCCTTCTTACACTGACCTCATGCTCAATCATGCTTCTGATTTCTTTAAGGGATTGTATGCATTGGGGGCACGAAGAATTGGTGTTTTCAGTGCACCACCTATTGGGTGTCTGCCATCTCAGAGGACTTTAGGAGGAGGCGTGGAAAGAGATTGTGCAGATAAACCAAACCAAGCAGCCATGCTCTTTAACTCCAAGCTCTCTGCTGAGCTGGACGACCTCAAGAATAACCTACCTAACTCGATGCTGATTTACGTCGACATCTACAACCCACTTCTGGATATGATAATCAACCCTACTAATTACGGTAAAACCTCAACCCTATCTTTTAGGAAGCGCTTGGATTTGTATTCAGAATTTCAGTGCATTTGTAATGAAAGTATTTCTAACAGAAAAATTTATGAGGACACATGTTTTTTACGAAAGCAATCTCAAACACGCCCCTTGACGACATCTCAAAGACTAACGAATTTTGTGTTGAATTTGCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

231

Amino Acids

25.83

Weight (kDa)

7.55

Isoelectric Point (pI)

24.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	11 - 158	1.4e-11	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58520 AT1G58525 AT1G58725 AT1G59030 AT1G59406 AT1G75880 AT1G75880 AT1G75890 AT1G75890 AT1G75890 AT1G75900 AT3G14820 AT3G43550 AT3G43570 AT5G42170
fragaria_vesca	FvH4_2g38112 FvH4_2g38120
malus_domestica	MD08G1009700.v1.1 MD08G1009800.v1.1 MD15G1008800.v1.1 MD15G1008900.v1.1 MD15G1009000.v1.1 MD15G1009100.v1.1 MD15G1009500.v1.1 MD15G1009600.v1.1
prunus_persica	Prupe.1G361800_v2.0.a1 Prupe.1G361800_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G362000_v2.0.a1 Prupe.1G362100_v2.0.a1
pyrus_communis	pycom08g00820 pycom08g00830 pycom15g00730 pycom15g00740 pycom15g00750 pycom15g00760 pycom15g00770
rosa_chinensis	RchiOBHm_Chr6g0303381 RchiOBHm_Chr6g0303411
rosa_laevigata	RLG00000011087 RLG00000011088
rosa_multiflora	Rmu_sc0002586.1_g000041 Rmu_ssc0000114.1_g000055 Rmu_ssc0000114.1_g000059
rosa_roxburghii	Rroxscaffold_7G00164790 Rroxscaffold_7G00164830
rosa_rugosa	Rorug06G0321000
rosa_samantha	Rh6AG435300 Rh6AG435400 Rh6CG447300 Rh6CG447500 Rh6DG434100 Rh6DG434200
rosa_wichuraiana	Rw6G037690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	16, 305
AccI	GTMKAC	1 cut(s)	459
AciI	CCGC	1 cut(s)	46
AcsI	RAATTY	4 cut(s)	557, 597, 670, 682
AfaI	GTAC	2 cut(s)	62, 197
AfeI	AGCGCT	1 cut(s)	539
AfiI	CCNNNNNNNGG	4 cut(s)	16, 183, 305, 478
AflIII	ACRYGT	1 cut(s)	611
AgsI	TTSAA	2 cut(s)	56, 682
AluBI	AGCT	3 cut(s)	73, 400, 412
AluI	AGCT	3 cut(s)	73, 400, 412
Alw21I	GWGCWC	1 cut(s)	298
Alw44I	GTGCAC	1 cut(s)	294
Aor51HI	AGCGCT	1 cut(s)	539
AoxI	GGCC	1 cut(s)	6
ApaLI	GTGCAC	1 cut(s)	294
ApeKI	GCWGC	2 cut(s)	144, 377
ApoI	RAATTY	4 cut(s)	557, 597, 670, 682
AspLEI	GCGC	1 cut(s)	540
AspS9I	GGNCC	1 cut(s)	7
BaeGI	GKGCMC	2 cut(s)	274, 298
BarI	GAAGNNNNNNTAC	2 cut(s)	179, 211
Bbv12I	GWGCWC	1 cut(s)	298
BbvI	GCAGC	2 cut(s)	156, 389
BccI	CCATC	1 cut(s)	325
BceAI	ACGGC	1 cut(s)	21
BfoI	RGCGCY	1 cut(s)	541
BisI	GCNGC	3 cut(s)	47, 145, 378
BlpI	GCTNAGC	1 cut(s)	408
BlsI	GCNGC	3 cut(s)	48, 146, 379
BmgT120I	GGNCC	1 cut(s)	7
BmsI	GCATC	1 cut(s)	435
Bpu1102I	GCTNAGC	1 cut(s)	408
BpuEI	CTTGAG	1 cut(s)	407
BsaXI	ACNNNNNCTCC	2 cut(s)	327, 357
Bsc4I	CCNNNNNNNGG	4 cut(s)	16, 183, 305, 478
Bse118I	RCCGGY	1 cut(s)	176
BseLI	CCNNNNNNNGG	4 cut(s)	16, 183, 305, 478
BseMII	CTCAG	2 cut(s)	335, 399
BseRI	GAGGAG	1 cut(s)	351
BseSI	GKGCMC	2 cut(s)	274, 298
BseXI	GCAGC	2 cut(s)	156, 389
BsgI	GTGCAG	1 cut(s)	378
BshFI	GGCC	1 cut(s)	8
BsiHKAI	GWGCWC	1 cut(s)	298
BsiSI	CCGG	1 cut(s)	177
BslI	CCNNNNNNNGG	4 cut(s)	16, 183, 305, 478
BsnI	GGCC	1 cut(s)	8
Bsp1286I	GDGCHC	2 cut(s)	274, 298
Bsp143I	GATC	1 cut(s)	37
Bsp1720I	GCTNAGC	1 cut(s)	408
BspACI	CCGC	1 cut(s)	46
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	2 cut(s)	334, 400
BsrFI	RCCGGY	1 cut(s)	176
BssAI	RCCGGY	1 cut(s)	176
BssMI	GATC	1 cut(s)	37
Bst4CI	ACNGT	3 cut(s)	33, 122, 509
Bst6I	CTCTTC	2 cut(s)	51, 87
BstC8I	GCNNGC	2 cut(s)	142, 178
BstDEI	CTNAG	3 cut(s)	112, 321, 408
BstH2I	RGCGCY	1 cut(s)	541
BstHHI	GCGC	1 cut(s)	540
BstKTI	GATC	1 cut(s)	40
BstMBI	GATC	1 cut(s)	37
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstNSI	RCATGY	1 cut(s)	615
BstSLI	GKGCMC	2 cut(s)	274, 298
BstV1I	GCAGC	2 cut(s)	156, 389
BsuRI	GGCC	1 cut(s)	8
BtsIMutI	CAGTG	4 cut(s)	29, 213, 298, 569
Cac8I	GCNNGC	2 cut(s)	142, 178
CfoI	GCGC	1 cut(s)	540
Cfr10I	RCCGGY	1 cut(s)	176
Cfr13I	GGNCC	1 cut(s)	7
Csp6I	GTAC	2 cut(s)	61, 196
CviAII	CATG	4 cut(s)	223, 233, 382, 612
CviJI	RGCY	6 cut(s)	8, 73, 116, 380, 400, 412
CviKI_1	RGCY	6 cut(s)	8, 73, 116, 380, 400, 412
CviQI	GTAC	2 cut(s)	61, 196
DdeI	CTNAG	3 cut(s)	112, 321, 408
DpnI	GATC	1 cut(s)	39
DpnII	GATC	1 cut(s)	37
Eam1104I	CTCTTC	2 cut(s)	51, 87
EarI	CTCTTC	2 cut(s)	51, 87
Eco47III	AGCGCT	1 cut(s)	539
EcoT22I	ATGCAT	1 cut(s)	265
FaeI	CATG	4 cut(s)	226, 236, 385, 615
FatI	CATG	4 cut(s)	222, 232, 381, 611
FblI	GTMKAC	1 cut(s)	459
Fnu4HI	GCNGC	3 cut(s)	47, 145, 378
Fsp4HI	GCNGC	3 cut(s)	47, 145, 378
GlaI	GCGC	1 cut(s)	539
GluI	GCNGC	3 cut(s)	47, 145, 378
HaeII	RGCGCY	1 cut(s)	541
HaeIII	GGCC	1 cut(s)	8
HapII	CCGG	1 cut(s)	177
HhaI	GCGC	1 cut(s)	540
Hin1II	CATG	4 cut(s)	226, 236, 385, 615
Hin6I	GCGC	1 cut(s)	538
HinP1I	GCGC	1 cut(s)	538
HincII	GTYRAC	1 cut(s)	460
HindII	GTYRAC	1 cut(s)	460
HpaII	CCGG	1 cut(s)	177
Hpy166II	GTNNAC	2 cut(s)	296, 460
Hpy188I	TCNGA	4 cut(s)	37, 241, 324, 556
Hpy188III	TCNNGA	2 cut(s)	424, 479
Hpy8I	GTNNAC	2 cut(s)	296, 460
Hpy99I	CGWCG	1 cut(s)	461
HpyAV	CCTTC	1 cut(s)	216
HpyCH4III	ACNGT	3 cut(s)	33, 122, 509
HpyCH4IV	ACGT	1 cut(s)	456
HpyCH4V	TGCA	5 cut(s)	263, 296, 359, 567, 688
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	3 cut(s)	112, 321, 408
HpySE526I	ACGT	1 cut(s)	456
Hsp92II	CATG	4 cut(s)	226, 236, 385, 615
HspAI	GCGC	1 cut(s)	538
KroI	GCCGGC	1 cut(s)	176
KroNI	GCCGGC	1 cut(s)	178
Kzo9I	GATC	1 cut(s)	37
LpnPI	CCDG	4 cut(s)	23, 190, 398, 464
Lsp1109I	GCAGC	2 cut(s)	156, 389
LweI	GCATC	1 cut(s)	435
MaeII	ACGT	1 cut(s)	456
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	1 cut(s)	39
MboI	GATC	1 cut(s)	37
MboII	GAAGA	3 cut(s)	68, 104, 288
MhlI	GDGCHC	2 cut(s)	274, 298
MluCI	AATT	8 cut(s)	50, 81, 279, 502, 557, 597, 670, 682
MnlI	CCTC	7 cut(s)	230, 318, 329, 332, 431, 526, 598
Mph1103I	ATGCAT	1 cut(s)	265
MroNI	GCCGGC	1 cut(s)	176
MseI	TTAA	2 cut(s)	249, 390
MspI	CCGG	1 cut(s)	177
MwoI	GCNNNNNNNGC	1 cut(s)	269
NaeI	GCCGGC	1 cut(s)	178
NdeII	GATC	1 cut(s)	37
NgoMIV	GCCGGC	1 cut(s)	176
NlaIII	CATG	4 cut(s)	226, 236, 385, 615
NsiI	ATGCAT	1 cut(s)	265
NspI	RCATGY	1 cut(s)	615
PciI	ACATGT	1 cut(s)	611
PdiI	GCCGGC	1 cut(s)	178
PflMI	CCANNNNNTGG	2 cut(s)	16, 305
PkrI	GCNGC	3 cut(s)	48, 146, 379
PscI	ACATGT	1 cut(s)	611
PspPI	GGNCC	1 cut(s)	7
RsaI	GTAC	2 cut(s)	62, 197
RsaNI	GTAC	2 cut(s)	61, 196
SalI	GTCGAC	1 cut(s)	458
SaqAI	TTAA	2 cut(s)	249, 390
SatI	GCNGC	3 cut(s)	47, 145, 378
Sau3AI	GATC	1 cut(s)	37
Sau96I	GGNCC	1 cut(s)	7
SduI	GDGCHC	2 cut(s)	274, 298
SfaNI	GCATC	1 cut(s)	435
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
Sse9I	AATT	8 cut(s)	50, 81, 279, 502, 557, 597, 670, 682
SsiI	CCGC	1 cut(s)	46
TaaI	ACNGT	3 cut(s)	33, 122, 509
TaiI	ACGT	1 cut(s)	459
TaqI	TCGA	2 cut(s)	443, 459
TasI	AATT	8 cut(s)	50, 81, 279, 502, 557, 597, 670, 682
TatI	WGTACW	1 cut(s)	60
TauI	GCSGC	1 cut(s)	49
Tru1I	TTAA	2 cut(s)	249, 390
Tru9I	TTAA	2 cut(s)	249, 390
TscAI	CASTG	4 cut(s)	36, 220, 298, 569
TseI	GCWGC	2 cut(s)	144, 377
TspDTI	ATGAA	2 cut(s)	97, 591
TspRI	CASTG	4 cut(s)	36, 220, 298, 569
Van91I	CCANNNNNTGG	2 cut(s)	16, 305
VneI	GTGCAC	1 cut(s)	294
XapI	RAATTY	4 cut(s)	557, 597, 670, 682
XceI	RCATGY	1 cut(s)	615
XmiI	GTMKAC	1 cut(s)	459
Zsp2I	ATGCAT	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.