Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0001158

Physical Location & Seq

Genomic Coordinates Reverse (-)

421832 .. 424994

Gene Structure 3163 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGAGTTTTCTTCTTCTTGTTCTTCCCAGTTGCTGTTGTCCCGGTTGATATTATGCGTTTGTGTTGTAGTTTTTGGTGTTTTCCAGTACCCTACTGCCACGGAGGGACTGGTGAAGCTGCCATCAAACCAGACCTTTCCGGCGGTGATTGTGTTTGGCGATTCGATCATGGACACCGGCAACAACAACCATCTTAAGTCAGTTGTTAAGTGCAATTTCTCTCCTTATGGACGAGATTTCCAGCAGCACAAGCCTACTGGCAGGTTTGGCAATGGCAAAGTGCCTTCTGACATCATAGCGTCACAATTGGGAATCCAAGAGTATTTGCCGGCATATTTGGATCCAAACCTACGACCGCAAGATCTCCCCGCCGGAGTTGTCTTTGCTTCAGGTGGCACCGGATATGACCCAATGACACCCCAGATAGTGTCAGTTATATCAATGGATGATCAGTTGAAAATGTTCAAAGAGTATATCGTGAAGCTCAAAGGCGTTGTTGGAGAAGAGAGAACTCAGTTCATTCTATCCAACGCTCTAGTTCTGGTGGTTGCCGGCAGCGATGACATCGCCAACACTTATTTTACCATTCGCATAAGAAAAGCTCAATATAGTGTTCCTGCTTACACTGACCTCATGGTCAACTCTGCATCTAGTTTCGTCAAGGAATTGTATAAACTTGGGGCGAGAAGGATTGGCGTGTTCAGTGCACCACCAATAGGATGTGTGCCTTCACAAAGAACTTTGGGTGGAGGAATTCTGAGAATGTGTGCAGAAGAATACAACGACGCGGCAAAGTTATTCAACATCAAACTGTCCAGCTCACTCAACTCCTTGAGCTCCGCCCTGCCCCACAGTAAAATCGTCTATGTGGATATTTACAATCCACTGCTCGATATAATTCTCAACCCAGCCAAAAGTGGGTTTAAAGTTGTGGAGAAAGGTTGCTGTGGAACGGGGAACATAGAGGTAGCAGTGTTGTGCAACAAGTTCGATTCTACGTGTGAAAATCCATCCGATTATGTGTTTTGGGACAGTTATCATCCTACGGAACGAACCTACAATATAATCGTTCCTTCACTTCTTCAGAGATACATGAAAGACTTCTTTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

371

Amino Acids

40.76

Weight (kDa)

7.47

Isoelectric Point (pI)

38.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	49 - 356	1.7e-29	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58520 AT1G58525 AT1G58725 AT1G59030 AT1G59406 AT1G75880 AT1G75880 AT1G75890 AT1G75890 AT1G75890 AT1G75900 AT3G14820 AT3G43550 AT3G43570 AT5G42170
fragaria_vesca	FvH4_2g38112 FvH4_2g38120
malus_domestica	MD08G1009700.v1.1 MD08G1009800.v1.1 MD15G1008800.v1.1 MD15G1008900.v1.1 MD15G1009000.v1.1 MD15G1009100.v1.1 MD15G1009500.v1.1 MD15G1009600.v1.1
prunus_persica	Prupe.1G361800_v2.0.a1 Prupe.1G361800_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G361900_v2.0.a1 Prupe.1G362000_v2.0.a1 Prupe.1G362100_v2.0.a1
pyrus_communis	pycom08g00820 pycom08g00830 pycom15g00730 pycom15g00740 pycom15g00750 pycom15g00760 pycom15g00770
rosa_chinensis	RchiOBHm_Chr6g0303381 RchiOBHm_Chr6g0303411
rosa_laevigata	RLG00000011087 RLG00000011088
rosa_multiflora	Rmu_sc0002586.1_g000041 Rmu_ssc0000114.1_g000055 Rmu_ssc0000114.1_g000059
rosa_roxburghii	Rroxscaffold_7G00164790 Rroxscaffold_7G00164830
rosa_rugosa	Rorug06G0321000
rosa_samantha	Rh6AG435300 Rh6AG435400 Rh6CG447300 Rh6CG447500 Rh6DG434100 Rh6DG434200
rosa_wichuraiana	Rw6G037690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	635
Acc36I	ACCTGC	1 cut(s)	252
AccB1I	GGYRCC	1 cut(s)	395
AccII	CGCG	1 cut(s)	788
AciI	CCGC	5 cut(s)	143, 356, 369, 788, 840
AclWI	GGATC	2 cut(s)	335, 348
AcsI	RAATTY	1 cut(s)	753
AcuI	CTGAAG	2 cut(s)	372, 1067
AfaI	GTAC	1 cut(s)	89
AfiI	CCNNNNNNNGG	2 cut(s)	716, 918
AflII	CTTAAG	1 cut(s)	194
AflIII	ACRYGT	1 cut(s)	998
AgsI	TTSAA	3 cut(s)	457, 466, 802
AluBI	AGCT	5 cut(s)	118, 484, 602, 819, 837
AluI	AGCT	5 cut(s)	118, 484, 602, 819, 837
Alw21I	GWGCWC	2 cut(s)	709, 839
Alw44I	GTGCAC	1 cut(s)	705
AlwI	GGATC	2 cut(s)	335, 348
AlwNI	CAGNNNCTG	1 cut(s)	34
ApaLI	GTGCAC	1 cut(s)	705
ApeKI	GCWGC	3 cut(s)	118, 244, 555
ApoI	RAATTY	1 cut(s)	753
Asp700I	GAANNNNTTC	2 cut(s)	461, 1100
AsuC2I	CCSGG	1 cut(s)	43
AsuHPI	GGTGA	2 cut(s)	124, 157
BaeGI	GKGCMC	1 cut(s)	709
BamHI	GGATCC	1 cut(s)	340
BanI	GGYRCC	1 cut(s)	395
BanII	GRGCYC	1 cut(s)	839
Bbv12I	GWGCWC	2 cut(s)	709, 839
BbvI	GCAGC	3 cut(s)	105, 256, 567
BccI	CCATC	3 cut(s)	130, 198, 1018
BcgI	CGANNNNNNTGC	2 cut(s)	970, 1004
BclI	TGATCA	1 cut(s)	448
BcnI	CCSGG	1 cut(s)	43
BfaI	CTAG	2 cut(s)	536, 651
BfrI	CTTAAG	1 cut(s)	194
BfuAI	ACCTGC	1 cut(s)	252
BglII	AGATCT	1 cut(s)	361
BisI	GCNGC	4 cut(s)	119, 245, 556, 789
BlsI	GCNGC	4 cut(s)	120, 246, 557, 790
Bme1390I	CCNGG	1 cut(s)	43
BmiI	GGNNCC	2 cut(s)	342, 397
BmrFI	CCNGG	1 cut(s)	43
BmrI	ACTGGG	1 cut(s)	22
BmsI	GCATC	1 cut(s)	656
BmuI	ACTGGG	1 cut(s)	22
BpuEI	CTTGAG	1 cut(s)	853
BpuMI	CCSGG	1 cut(s)	43
BsaAI	YACGTR	1 cut(s)	999
BsaJI	CCNNGG	1 cut(s)	99
BsaWI	WCCGGW	1 cut(s)	398
Bsc4I	CCNNNNNNNGG	2 cut(s)	716, 918
Bse118I	RCCGGY	3 cut(s)	176, 328, 551
Bse1I	ACTGG	4 cut(s)	28, 85, 114, 262
Bse3DI	GCAATG	1 cut(s)	277
BseDI	CCNNGG	1 cut(s)	99
BseGI	GGATG	4 cut(s)	451, 725, 1010, 1039
BseLI	CCNNNNNNNGG	2 cut(s)	716, 918
BseMI	GCAATG	1 cut(s)	277
BseMII	CTCAG	2 cut(s)	527, 749
BseNI	ACTGG	4 cut(s)	28, 85, 114, 262
BseSI	GKGCMC	1 cut(s)	709
BseXI	GCAGC	3 cut(s)	105, 256, 567
BseYI	CCCAGC	1 cut(s)	907
BsgI	GTGCAG	1 cut(s)	789
Bsh1236I	CGCG	1 cut(s)	788
Bsh1285I	CGRYCG	1 cut(s)	356
BshNI	GGYRCC	1 cut(s)	395
BsiEI	CGRYCG	1 cut(s)	356
BsiHKAI	GWGCWC	2 cut(s)	709, 839
BsiSI	CCGG	7 cut(s)	43, 140, 177, 329, 372, 399, 552
BslFI	GGGAC	3 cut(s)	25, 120, 1043
BslI	CCNNNNNNNGG	2 cut(s)	716, 918
BsmFI	GGGAC	3 cut(s)	25, 120, 1043
Bsp1286I	GDGCHC	2 cut(s)	709, 839
Bsp143I	GATC	4 cut(s)	165, 340, 361, 448
BspACI	CCGC	5 cut(s)	143, 356, 369, 788, 840
BspCNI	CTCAG	2 cut(s)	526, 750
BspFNI	CGCG	1 cut(s)	788
BspLI	GGNNCC	2 cut(s)	342, 397
BspMI	ACCTGC	1 cut(s)	252
BspPI	GGATC	2 cut(s)	335, 348
BspT107I	GGYRCC	1 cut(s)	395
BspTI	CTTAAG	1 cut(s)	194
BsrDI	GCAATG	1 cut(s)	277
BsrFI	RCCGGY	3 cut(s)	176, 328, 551
BsrI	ACTGG	4 cut(s)	28, 85, 114, 262
BssAI	RCCGGY	3 cut(s)	176, 328, 551
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	4 cut(s)	165, 340, 361, 448
Bst4CI	ACNGT	3 cut(s)	813, 854, 1034
Bst6I	CTCTTC	1 cut(s)	498
BstAFI	CTTAAG	1 cut(s)	194
BstBAI	YACGTR	1 cut(s)	999
BstC8I	GCNNGC	2 cut(s)	330, 553
BstDEI	CTNAG	2 cut(s)	513, 758
BstDSI	CCRYGG	1 cut(s)	99
BstF5I	GGATG	4 cut(s)	451, 725, 1010, 1039
BstFNI	CGCG	1 cut(s)	788
BstKTI	GATC	4 cut(s)	168, 343, 364, 451
BstMBI	GATC	4 cut(s)	165, 340, 361, 448
BstMCI	CGRYCG	1 cut(s)	356
BstMWI	GCNNNNNNNGC	2 cut(s)	250, 267
BstSCI	CCNGG	1 cut(s)	41
BstSLI	GKGCMC	1 cut(s)	709
BstUI	CGCG	1 cut(s)	788
BstV1I	GCAGC	3 cut(s)	105, 256, 567
BstX2I	RGATCY	2 cut(s)	340, 361
BstYI	RGATCY	2 cut(s)	340, 361
BtgI	CCRYGG	1 cut(s)	99
BtgZI	GCGATG	2 cut(s)	550, 573
BtsCI	GGATG	4 cut(s)	451, 725, 1010, 1039
BtsI	GCAGTG	2 cut(s)	884, 978
BtsIMutI	CAGTG	4 cut(s)	624, 709, 884, 978
BveI	ACCTGC	1 cut(s)	252
Cac8I	GCNNGC	2 cut(s)	330, 553
CaiI	CAGNNNCTG	1 cut(s)	34
Cfr10I	RCCGGY	3 cut(s)	176, 328, 551
CseI	GACGC	2 cut(s)	288, 794
Csp6I	GTAC	1 cut(s)	88
CviAII	CATG	3 cut(s)	169, 634, 1093
CviJI	RGCY	7 cut(s)	118, 253, 484, 602, 819, 837, 911
CviKI_1	RGCY	7 cut(s)	118, 253, 484, 602, 819, 837, 911
CviQI	GTAC	1 cut(s)	88
DdeI	CTNAG	2 cut(s)	513, 758
DpnI	GATC	4 cut(s)	167, 342, 363, 450
DpnII	GATC	4 cut(s)	165, 340, 361, 448
DraI	TTTAAA	1 cut(s)	925
DrdI	GACNNNNNNGTC	1 cut(s)	635
DseDI	GACNNNNNNGTC	1 cut(s)	635
Eam1104I	CTCTTC	1 cut(s)	498
EarI	CTCTTC	1 cut(s)	498
EciI	GGCGGA	1 cut(s)	829
Ecl136II	GAGCTC	1 cut(s)	837
Eco24I	GRGCYC	1 cut(s)	839
Eco53kI	GAGCTC	1 cut(s)	837
Eco57I	CTGAAG	2 cut(s)	372, 1067
EcoICRI	GAGCTC	1 cut(s)	837
EcoRI	GAATTC	1 cut(s)	753
EcoT38I	GRGCYC	1 cut(s)	839
FaeI	CATG	3 cut(s)	172, 637, 1096
FaqI	GGGAC	3 cut(s)	25, 120, 1043
FatI	CATG	3 cut(s)	168, 633, 1092
FauI	CCCGC	1 cut(s)	376
FbaI	TGATCA	1 cut(s)	448
Fnu4HI	GCNGC	4 cut(s)	119, 245, 556, 789
FokI	GGATG	4 cut(s)	458, 732, 997, 1026
FriOI	GRGCYC	1 cut(s)	839
Fsp4HI	GCNGC	4 cut(s)	119, 245, 556, 789
FspBI	CTAG	2 cut(s)	536, 651
GluI	GCNGC	4 cut(s)	119, 245, 556, 789
GsaI	CCCAGC	1 cut(s)	911
HapII	CCGG	7 cut(s)	43, 140, 177, 329, 372, 399, 552
HgaI	GACGC	2 cut(s)	288, 794
Hin1II	CATG	3 cut(s)	172, 637, 1096
HincII	GTYRAC	1 cut(s)	640
HindII	GTYRAC	1 cut(s)	640
HinfI	GANTC	3 cut(s)	161, 312, 992
HpaII	CCGG	7 cut(s)	43, 140, 177, 329, 372, 399, 552
HphI	GGTGA	2 cut(s)	124, 157
Hpy166II	GTNNAC	2 cut(s)	640, 707
Hpy188I	TCNGA	4 cut(s)	289, 759, 1015, 1086
Hpy188III	TCNNGA	1 cut(s)	478
Hpy8I	GTNNAC	2 cut(s)	640, 707
Hpy99I	CGWCG	1 cut(s)	788
HpyAV	CCTTC	4 cut(s)	294, 681, 738, 1083
HpyCH4III	ACNGT	3 cut(s)	813, 854, 1034
HpyCH4IV	ACGT	1 cut(s)	998
HpyCH4V	TGCA	5 cut(s)	213, 647, 707, 770, 981
HpyF10VI	GCNNNNNNNGC	2 cut(s)	250, 267
HpyF3I	CTNAG	2 cut(s)	513, 758
HpySE526I	ACGT	1 cut(s)	998
Hsp92II	CATG	3 cut(s)	172, 637, 1096
KroI	GCCGGC	2 cut(s)	328, 551
KroNI	GCCGGC	2 cut(s)	330, 553
Ksp22I	TGATCA	1 cut(s)	448
Kzo9I	GATC	4 cut(s)	165, 340, 361, 448
LmnI	GCTCC	1 cut(s)	842
Lsp1109I	GCAGC	3 cut(s)	105, 256, 567
LweI	GCATC	1 cut(s)	656
MaeI	CTAG	2 cut(s)	536, 651
MaeII	ACGT	1 cut(s)	998
MaeIII	GTNAC	1 cut(s)	300
MalI	GATC	4 cut(s)	167, 342, 363, 450
MboI	GATC	4 cut(s)	165, 340, 361, 448
MboII	GAAGA	6 cut(s)	3, 6, 15, 515, 785, 1073
MfeI	CAATTG	1 cut(s)	305
MflI	RGATCY	2 cut(s)	340, 361
MhlI	GDGCHC	2 cut(s)	709, 839
MluCI	AATT	5 cut(s)	214, 305, 665, 753, 897
MmeI	TCCRAC	2 cut(s)	478, 552
MnlI	CCTC	4 cut(s)	97, 641, 743, 958
MroNI	GCCGGC	2 cut(s)	328, 551
MroXI	GAANNNNTTC	2 cut(s)	461, 1100
MseI	TTAA	4 cut(s)	195, 207, 924, 1111
MspCI	CTTAAG	1 cut(s)	194
MspI	CCGG	7 cut(s)	43, 140, 177, 329, 372, 399, 552
MspR9I	CCNGG	1 cut(s)	43
MunI	CAATTG	1 cut(s)	305
MvnI	CGCG	1 cut(s)	788
MwoI	GCNNNNNNNGC	2 cut(s)	250, 267
NaeI	GCCGGC	2 cut(s)	330, 553
NciI	CCSGG	1 cut(s)	43
NdeII	GATC	4 cut(s)	165, 340, 361, 448
NgoMIV	GCCGGC	2 cut(s)	328, 551
NlaIII	CATG	3 cut(s)	172, 637, 1096
NlaIV	GGNNCC	2 cut(s)	342, 397
NmuCI	GTSAC	1 cut(s)	300
PdiI	GCCGGC	2 cut(s)	330, 553
PdmI	GAANNNNTTC	2 cut(s)	461, 1100
PfeI	GAWTC	3 cut(s)	161, 312, 992
PkrI	GCNGC	4 cut(s)	120, 246, 557, 790
Ppu21I	YACGTR	1 cut(s)	999
Psp124BI	GAGCTC	1 cut(s)	839
PspFI	CCCAGC	1 cut(s)	907
PspN4I	GGNNCC	2 cut(s)	342, 397
PstNI	CAGNNNCTG	1 cut(s)	34
PsuI	RGATCY	2 cut(s)	340, 361
RsaI	GTAC	1 cut(s)	89
RsaNI	GTAC	1 cut(s)	88
SacI	GAGCTC	1 cut(s)	839
SaqAI	TTAA	4 cut(s)	195, 207, 924, 1111
SatI	GCNGC	4 cut(s)	119, 245, 556, 789
Sau3AI	GATC	4 cut(s)	165, 340, 361, 448
ScrFI	CCNGG	1 cut(s)	43
SduI	GDGCHC	2 cut(s)	709, 839
SfaNI	GCATC	1 cut(s)	656
SmlI	CTYRAG	2 cut(s)	194, 832
SmoI	CTYRAG	2 cut(s)	194, 832
Sse9I	AATT	5 cut(s)	214, 305, 665, 753, 897
SsiI	CCGC	5 cut(s)	143, 356, 369, 788, 840
SspMI	CTAG	2 cut(s)	536, 651
SstI	GAGCTC	1 cut(s)	839
StyD4I	CCNGG	1 cut(s)	41
TaaI	ACNGT	3 cut(s)	813, 854, 1034
TaiI	ACGT	1 cut(s)	1001
TaqI	TCGA	3 cut(s)	164, 891, 990
TasI	AATT	5 cut(s)	214, 305, 665, 753, 897
TauI	GCSGC	1 cut(s)	791
TfiI	GAWTC	3 cut(s)	161, 312, 992
Tru1I	TTAA	4 cut(s)	195, 207, 924, 1111
Tru9I	TTAA	4 cut(s)	195, 207, 924, 1111
TscAI	CASTG	4 cut(s)	631, 709, 891, 978
TseFI	GTSAC	1 cut(s)	300
TseI	GCWGC	3 cut(s)	118, 244, 555
Tsp45I	GTSAC	1 cut(s)	300
TspDTI	ATGAA	2 cut(s)	508, 1109
TspGWI	ACGGA	2 cut(s)	116, 1061
TspRI	CASTG	4 cut(s)	631, 709, 891, 978
Vha464I	CTTAAG	1 cut(s)	194
VneI	GTGCAC	1 cut(s)	705
XapI	RAATTY	1 cut(s)	753
XcmI	CCANNNNNNNNNTGG	1 cut(s)	106
XmnI	GAANNNNTTC	2 cut(s)	461, 1100
XspI	CTAG	2 cut(s)	536, 651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.