pycom16g09130

Very-long-chain 3-oxoacyl-CoA reductase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0001251
Physical Location & Seq
Reverse (-)
6117664 .. 6119165
1502 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1035 bp
ATGCAGTTTGCTTGTGTGTGGGCCTGCAAAAGAATGTGTGTGGATAAACAAGAAACCCTACCAATTTCTCCACCGTGGTTGCTGGCAATGGAATTCCAACAGTTTTTCCTAGTGGCAGTAAGCACTCTAGGGGTCATCTCTCTCTGCAAATCCTTCATCAATTTTCTCAGATGGGTCTGGCTCATGCTCCTCAGACCCCCAAAGAATCTCAAGGAGTACGGCTCGTGGGCTCTCATCACTGGCCCCACTGACGGAATCGGAAAAGCCCTAGCATTCGAAATGGCTTCCAAGGGTCTTAACCTAGTTTTGGTTGGTCGAAACCCTTCGAAGCTCGAAGCAACCTCCAACGAAATACACGAAAAGTACGGTGAAAAAATTCACACCAAGAATATTGCCATTGATTTGGCACAGTTTACTGGGCAGGAAATTGCTGATGCGATAGAGGAAGGAATAAAAGGGCTTGACGTGGGCATTTTGGTAAATAACGCTGGGGTGGCTTACCCTTATGCAAGGTTTTTTCATGAGGTTGATCTGGAGCTGATGGAGAGCATTGTGAAGGTGAACATGGAGGCCGCCACGTGGATCACTAGGGCAGTGCTTCCGGTTATGCTGAGGAAGAAGAAAGGAGCAATTGTTAACATTGGTTCTGCCTCCTCGGAGACCCTCCCTTCTTACCCTCTATACACTGTTTATGCTGCTTCCAAAGCGTACATATCAATGTTCTCAAAATGCATTAGTTTGGAGTACAAGCAGCAAGGAATTGACATTCAGTGCCAGATTCCTAGTTTGGTGGCAACAAAGATGACAAAGATGAAGCCGACTTCCTTCTTCATTGCATCACCAGAGATGTATAGCAAAGCAAGCATGAGATGCATTGGTTATGAGCATCTGTGCACACCCTACTTGAGCCATTCTGTGCAGTGGTTCGTAACAAATGCACTGCCTGATGTGTTGTTGAATGCGATCATGTTTAAGTATTTCATTGGGATGCGAAAGAGAGGTCAATTGAAGGAGTCGCGAAACAAAGCAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00062 ko00140 ko01040 ko01100 ko01110 ko01212 map00062 map00140 map01040 map01100 map01110 map01212
Pfam Domains
Protein Families
adh_short

Protein Analysis

345

Amino Acids

38.63

Weight (kDa)

9.1

Isoelectric Point (pI)

33.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 76 - 271 1.5e-41 short chain dehydrogenase
adh_short_C2 PF13561 84 - 272 3.4e-25 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1018
AciI CCGC 1 cut(s) 573
AclWI GGATC 1 cut(s) 590
AcsI RAATTY 2 cut(s) 92, 375
AcvI CACGTG 1 cut(s) 579
AfaI GTAC 4 cut(s) 218, 365, 710, 746
AfiI CCNNNNNNNGG 3 cut(s) 251, 307, 579
AgsI TTSAA 2 cut(s) 958, 1009
AjiI CACGTC 1 cut(s) 466
AluBI AGCT 2 cut(s) 331, 538
AluI AGCT 2 cut(s) 331, 538
Alw21I GWGCWC 1 cut(s) 896
Alw26I GTCTC 1 cut(s) 653
Alw44I GTGCAC 1 cut(s) 892
AlwI GGATC 1 cut(s) 590
AoxI GGCC 3 cut(s) 21, 241, 570
ApaLI GTGCAC 1 cut(s) 892
ApeKI GCWGC 2 cut(s) 695, 751
ApoI RAATTY 2 cut(s) 92, 375
ArsI GACNNNNNNTTYG 2 cut(s) 985, 1017
Asp700I GAANNNNTTC 2 cut(s) 322, 375
AspS9I GGNCC 2 cut(s) 21, 242
AsuHPI GGTGA 3 cut(s) 380, 571, 831
AsuII TTCGAA 2 cut(s) 276, 326
BaeGI GKGCMC 1 cut(s) 896
BanII GRGCYC 1 cut(s) 232
BauI CACGAG 1 cut(s) 223
BbrPI CACGTG 1 cut(s) 579
Bbv12I GWGCWC 1 cut(s) 896
BbvCI CCTCAGC 1 cut(s) 611
BbvI GCAGC 2 cut(s) 682, 763
BccI CCATC 2 cut(s) 165, 535
BceAI ACGGC 1 cut(s) 235
BcoDI GTCTC 1 cut(s) 653
BfaI CTAG 6 cut(s) 110, 128, 269, 302, 588, 783
BisI GCNGC 3 cut(s) 573, 696, 752
BlsI GCNGC 3 cut(s) 574, 697, 753
BmgBI CACGTC 1 cut(s) 466
BmgT120I GGNCC 2 cut(s) 21, 242
BmiI GGNNCC 1 cut(s) 244
BmrI ACTGGG 1 cut(s) 426
BmsI GCATC 5 cut(s) 424, 845, 860, 895, 978
BmuI ACTGGG 1 cut(s) 426
BplI GAGNNNNNCTC 2 cut(s) 206, 238
BpmI CTGGAG 1 cut(s) 554
Bpu10I CCTNAGC 1 cut(s) 611
Bpu14I TTCGAA 2 cut(s) 276, 326
BpuEI CTTGAG 2 cut(s) 194, 925
BsaAI YACGTR 1 cut(s) 579
BsaI GGTCTC 1 cut(s) 653
BsaJI CCNNGG 3 cut(s) 74, 288, 654
BsaWI WCCGGW 1 cut(s) 601
BsaXI ACNNNNNCTCC 2 cut(s) 618, 648
Bsc4I CCNNNNNNNGG 3 cut(s) 251, 307, 579
Bse1I ACTGG 2 cut(s) 244, 421
Bse3DI GCAATG 2 cut(s) 93, 831
BseDI CCNNGG 3 cut(s) 74, 288, 654
BseGI GGATG 1 cut(s) 993
BseLI CCNNNNNNNGG 3 cut(s) 251, 307, 579
BseMI GCAATG 2 cut(s) 93, 831
BseMII CTCAG 3 cut(s) 181, 205, 602
BseNI ACTGG 2 cut(s) 244, 421
BseRI GAGGAG 2 cut(s) 179, 643
BseSI GKGCMC 1 cut(s) 896
BseXI GCAGC 2 cut(s) 682, 763
BseYI CCCAGC 1 cut(s) 488
BsgI GTGCAG 1 cut(s) 938
Bsh1236I CGCG 1 cut(s) 1018
BshFI GGCC 3 cut(s) 23, 243, 572
BsiHKAI GWGCWC 1 cut(s) 896
BsiSI CCGG 1 cut(s) 602
BslI CCNNNNNNNGG 3 cut(s) 251, 307, 579
BsmAI GTCTC 1 cut(s) 653
BsmI GAATGC 2 cut(s) 272, 964
BsnI GGCC 3 cut(s) 23, 243, 572
Bso31I GGTCTC 1 cut(s) 653
Bsp119I TTCGAA 2 cut(s) 276, 326
Bsp1286I GDGCHC 2 cut(s) 232, 896
Bsp143I GATC 3 cut(s) 529, 582, 963
Bsp68I TCGCGA 1 cut(s) 1018
BspACI CCGC 1 cut(s) 573
BspANI GGCC 3 cut(s) 23, 243, 572
BspCNI CTCAG 3 cut(s) 180, 204, 603
BspFNI CGCG 1 cut(s) 1018
BspHI TCATGA 1 cut(s) 520
BspLI GGNNCC 1 cut(s) 244
BspPI GGATC 1 cut(s) 590
BspT104I TTCGAA 2 cut(s) 276, 326
BspTNI GGTCTC 1 cut(s) 653
BsrDI GCAATG 2 cut(s) 93, 831
BsrI ACTGG 2 cut(s) 244, 421
BssECI CCNNGG 3 cut(s) 74, 288, 654
BssMI GATC 3 cut(s) 529, 582, 963
BssSI CACGAG 1 cut(s) 223
BssT1I CCWWGG 1 cut(s) 288
Bst2BI CACGAG 1 cut(s) 223
Bst4CI ACNGT 5 cut(s) 75, 102, 368, 411, 688
BstAPI GCANNNNNTGC 1 cut(s) 870
BstBAI YACGTR 1 cut(s) 579
BstBI TTCGAA 2 cut(s) 276, 326
BstC8I GCNNGC 3 cut(s) 25, 84, 862
BstDEI CTNAG 3 cut(s) 167, 191, 611
BstDSI CCRYGG 1 cut(s) 74
BstF5I GGATG 1 cut(s) 993
BstFNI CGCG 1 cut(s) 1018
BstKTI GATC 3 cut(s) 532, 585, 966
BstMAI GTCTC 1 cut(s) 653
BstMBI GATC 3 cut(s) 529, 582, 963
BstMWI GCNNNNNNNGC 4 cut(s) 494, 704, 861, 870
BstSLI GKGCMC 1 cut(s) 896
BstUI CGCG 1 cut(s) 1018
BstV1I GCAGC 2 cut(s) 682, 763
BstXI CCANNNNNNTGG 1 cut(s) 403
BsuRI GGCC 3 cut(s) 23, 243, 572
BtgI CCRYGG 1 cut(s) 74
BtrI CACGTC 1 cut(s) 466
BtsCI GGATG 1 cut(s) 993
BtsI GCAGTG 3 cut(s) 600, 926, 938
BtsIMutI CAGTG 7 cut(s) 237, 246, 600, 684, 776, 926, 938
BtuMI TCGCGA 1 cut(s) 1018
Cac8I GCNNGC 3 cut(s) 25, 84, 862
CciI TCATGA 1 cut(s) 520
Cfr13I GGNCC 2 cut(s) 21, 242
Csp6I GTAC 4 cut(s) 217, 364, 709, 745
CspCI CAANNNNNGTGG 2 cut(s) 60, 95
CviAII CATG 5 cut(s) 184, 521, 565, 865, 967
CviQI GTAC 4 cut(s) 217, 364, 709, 745
DdeI CTNAG 3 cut(s) 167, 191, 611
DpnI GATC 3 cut(s) 531, 584, 965
DpnII GATC 3 cut(s) 529, 582, 963
Eco130I CCWWGG 1 cut(s) 288
Eco24I GRGCYC 1 cut(s) 232
Eco31I GGTCTC 1 cut(s) 653
Eco72I CACGTG 1 cut(s) 579
EcoRI GAATTC 1 cut(s) 92
EcoT14I CCWWGG 1 cut(s) 288
EcoT22I ATGCAT 2 cut(s) 734, 875
EcoT38I GRGCYC 1 cut(s) 232
ErhI CCWWGG 1 cut(s) 288
FaeI CATG 5 cut(s) 187, 524, 568, 868, 970
FatI CATG 5 cut(s) 183, 520, 564, 864, 966
Fnu4HI GCNGC 3 cut(s) 573, 696, 752
FokI GGATG 1 cut(s) 1000
FriOI GRGCYC 1 cut(s) 232
Fsp4HI GCNGC 3 cut(s) 573, 696, 752
FspBI CTAG 6 cut(s) 110, 128, 269, 302, 588, 783
GluI GCNGC 3 cut(s) 573, 696, 752
GsaI CCCAGC 1 cut(s) 492
GsuI CTGGAG 1 cut(s) 554
HaeIII GGCC 3 cut(s) 23, 243, 572
HapII CCGG 1 cut(s) 602
Hin1II CATG 5 cut(s) 187, 524, 568, 868, 970
HincII GTYRAC 1 cut(s) 637
HindII GTYRAC 1 cut(s) 637
HinfI GANTC 4 cut(s) 205, 255, 778, 1013
HpaI GTTAAC 1 cut(s) 637
HpaII CCGG 1 cut(s) 602
HphI GGTGA 3 cut(s) 380, 571, 831
Hpy166II GTNNAC 4 cut(s) 414, 562, 637, 894
Hpy188I TCNGA 4 cut(s) 170, 194, 260, 658
Hpy188III TCNNGA 3 cut(s) 521, 533, 1017
Hpy8I GTNNAC 4 cut(s) 414, 562, 637, 894
HpyAV CCTTC 7 cut(s) 163, 333, 440, 550, 678, 835, 1003
HpyCH4III ACNGT 5 cut(s) 75, 102, 368, 411, 688
HpyCH4IV ACGT 2 cut(s) 465, 578
HpyF10VI GCNNNNNNNGC 4 cut(s) 494, 704, 861, 870
HpyF3I CTNAG 3 cut(s) 167, 191, 611
HpySE526I ACGT 2 cut(s) 465, 578
Hsp92II CATG 5 cut(s) 187, 524, 568, 868, 970
KspAI GTTAAC 1 cut(s) 637
Kzo9I GATC 3 cut(s) 529, 582, 963
LmnI GCTCC 3 cut(s) 192, 535, 626
Lsp1109I GCAGC 2 cut(s) 682, 763
LweI GCATC 5 cut(s) 424, 845, 860, 895, 978
MaeI CTAG 6 cut(s) 110, 128, 269, 302, 588, 783
MaeII ACGT 2 cut(s) 465, 578
MaeIII GTNAC 1 cut(s) 928
MalI GATC 3 cut(s) 531, 584, 965
MboI GATC 3 cut(s) 529, 582, 963
MboII GAAGA 3 cut(s) 628, 631, 820
MfeI CAATTG 2 cut(s) 630, 1004
MhlI GDGCHC 2 cut(s) 232, 896
MluCI AATT 9 cut(s) 63, 92, 160, 375, 426, 630, 759, 1004, 1029
MlyI GAGTC 1 cut(s) 1022
MmeI TCCRAC 2 cut(s) 121, 369
Mph1103I ATGCAT 2 cut(s) 734, 875
MroXI GAANNNNTTC 2 cut(s) 322, 375
MseI TTAA 3 cut(s) 297, 636, 972
MslI CAYNNNNRTG 2 cut(s) 716, 986
MspI CCGG 1 cut(s) 602
MunI CAATTG 2 cut(s) 630, 1004
Mva1269I GAATGC 2 cut(s) 272, 964
MvnI CGCG 1 cut(s) 1018
MwoI GCNNNNNNNGC 4 cut(s) 494, 704, 861, 870
NdeII GATC 3 cut(s) 529, 582, 963
NlaIII CATG 5 cut(s) 187, 524, 568, 868, 970
NlaIV GGNNCC 1 cut(s) 244
NruI TCGCGA 1 cut(s) 1018
NsiI ATGCAT 2 cut(s) 734, 875
NspV TTCGAA 2 cut(s) 276, 326
PagI TCATGA 1 cut(s) 520
PcsI WCGNNNNNNNCGW 1 cut(s) 354
PctI GAATGC 2 cut(s) 272, 964
PdmI GAANNNNTTC 2 cut(s) 322, 375
PfeI GAWTC 3 cut(s) 205, 255, 778
PkrI GCNGC 3 cut(s) 574, 697, 753
PleI GAGTC 1 cut(s) 1021
PmaCI CACGTG 1 cut(s) 579
PmlI CACGTG 1 cut(s) 579
PpsI GAGTC 1 cut(s) 1021
Ppu21I YACGTR 1 cut(s) 579
PspCI CACGTG 1 cut(s) 579
PspFI CCCAGC 1 cut(s) 488
PspN4I GGNNCC 1 cut(s) 244
PspPI GGNCC 2 cut(s) 21, 242
RruI TCGCGA 1 cut(s) 1018
RsaI GTAC 4 cut(s) 218, 365, 710, 746
RsaNI GTAC 4 cut(s) 217, 364, 709, 745
RseI CAYNNNNRTG 2 cut(s) 716, 986
SaqAI TTAA 3 cut(s) 297, 636, 972
SatI GCNGC 3 cut(s) 573, 696, 752
Sau3AI GATC 3 cut(s) 529, 582, 963
Sau96I GGNCC 2 cut(s) 21, 242
SchI GAGTC 1 cut(s) 1022
SduI GDGCHC 2 cut(s) 232, 896
SfaNI GCATC 5 cut(s) 424, 845, 860, 895, 978
SfuI TTCGAA 2 cut(s) 276, 326
SmiMI CAYNNNNRTG 2 cut(s) 716, 986
SmlI CTYRAG 2 cut(s) 209, 904
SmoI CTYRAG 2 cut(s) 209, 904
Sse9I AATT 9 cut(s) 63, 92, 160, 375, 426, 630, 759, 1004, 1029
SsiI CCGC 1 cut(s) 573
SspI AATATT 1 cut(s) 391
SspMI CTAG 6 cut(s) 110, 128, 269, 302, 588, 783
StyI CCWWGG 1 cut(s) 288
TaaI ACNGT 5 cut(s) 75, 102, 368, 411, 688
TaiI ACGT 2 cut(s) 468, 581
TaqI TCGA 4 cut(s) 276, 316, 326, 333
TasI AATT 9 cut(s) 63, 92, 160, 375, 426, 630, 759, 1004, 1029
TatI WGTACW 1 cut(s) 744
TauI GCSGC 1 cut(s) 575
TfiI GAWTC 3 cut(s) 205, 255, 778
Tru1I TTAA 3 cut(s) 297, 636, 972
Tru9I TTAA 3 cut(s) 297, 636, 972
TscAI CASTG 7 cut(s) 244, 253, 600, 691, 776, 926, 945
TseI GCWGC 2 cut(s) 695, 751
TspDTI ATGAA 5 cut(s) 145, 509, 820, 827, 970
TspGWI ACGGA 1 cut(s) 267
TspRI CASTG 7 cut(s) 244, 253, 600, 691, 776, 926, 945
VneI GTGCAC 1 cut(s) 892
XapI RAATTY 2 cut(s) 92, 375
XmnI GAANNNNTTC 2 cut(s) 322, 375
XspI CTAG 6 cut(s) 110, 128, 269, 302, 588, 783
Zsp2I ATGCAT 2 cut(s) 734, 875
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.