Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0000799

Physical Location & Seq

Genomic Coordinates Forward (+)

14959222 .. 14960164

Gene Structure 943 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGTTTTATGTGTATGCTCCGGAAGTTATCCCATTTCAAAACATTGTATTCTTTTGGGATTTTATGATCCTTAAAGTTTTAAATGGAATTCTTTCTGCAGTCATGGCAGGTGTTGCACCCGAGGGATCACAGTTTGATGCAAAACAGTATGATACTAAGATGAGTGAGCTGCTCTCAACTGATGGGCAAGATTTCTTCACGTCGTATGATGAAGTTTTTGAAAGTTTTGATGCCATGGGATTGCAGGAAAATCTTCTGAGAGGCATTTATGCGTATGGTTTTGAGAAGCCTTCTGCCATTCAGCAAAGGGGAATTGTTCCCTTCTGCAAAGGCCTTGATGTGATTCAACAGGCTCAGTCCGGAACCGGGAAAACAGCAACCTTTTGCTCGGGGATTTTGCAGCAACTTGATTATGGTGTTGTCCAGTGCCAGGCTTTGGTTTTGGCACCTACCAGGGAGTTGGCACAGCAGATTGAGAAGGTTATGCGAGCACTTGGTGACTACCTTGGTGTAAAGGTTCATGCTTGTGTTGGTGGGACAAGTGTTCGTGAGGATCGAGCGCATTCTTCAAGCTGGTGTTCATGTTGTTGTTGGAACCCCTGGTCGTGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

205

Amino Acids

22.63

Weight (kDa)

4.76

Isoelectric Point (pI)

49.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	99 - 189	7.8e-20	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000799)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54270 AT1G54270 AT1G72730 AT3G13920 AT3G13920 AT3G13920 AT3G13920 AT3G13920
fragaria_vesca	FvH4_1g07920 FvH4_2g31520 FvH4_6g34120 FvH4_6g34120
malus_domestica	MD02G1082700.v1.1 MD08G1065300.v1.1 MD09G1189100.v1.1 MD15G1210800.v1.1 MD17G1172700.v1.1
prunus_persica	Prupe.1G409000_v2.0.a1 Prupe.3G045500_v2.0.a1 Prupe.3G045500_v2.0.a1 Prupe.7G206000_v2.0.a1
pyrus_communis	pycom02g06560 pycom08g05400 pycom09g10600 pycom15g18670 pycom17g17070 pycom17g17080
rosa_chinensis	RchiOBHm_Chr2g0093791 RchiOBHm_Chr2g0144411 RchiOBHm_Chr2g0144421 RchiOBHm_Chr6g0311241
rosa_laevigata	RLG00000010423 RLG00000016437 RLG00000020078 RLG00000020079 RLG00000030391
rosa_multiflora	Rmu_co8454423.1_g000001 Rmu_sc0002126.1_g000004 Rmu_sc0003475.1_g000010 Rmu_sc0012046.1_g000007 Rmu_sc0012116.1_g000001 Rmu_sc0020003.1_g000001
rosa_roxburghii	Rroxscaffold_2G00101330 Rroxscaffold_2G00147800 Rroxscaffold_7G00157830
rosa_rugosa	Rorug02G0040100 Rorug02G0040100 Rorug02G0386200 Rorug02G0386300 Rorug02G0386400 Rorug06G0386800 Rorug06G0386900
rosa_samantha	Rh2AG086300 Rh2AG438600 Rh2AG438700 Rh2BG449000 Rh2CG089000 Rh2CG425700 Rh2CG425800 Rh2DG084700 Rh2DG084800 Rh2DG458700 Rh2DG458800 Rh6BG512000 Rh6CG517800 Rh6DG503900
rosa_wichuraiana	Rw2G035870 Rw2G035880 Rw6G043660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	98
Acc36I	ACCTGC	1 cut(s)	98
AccB1I	GGYRCC	1 cut(s)	445
AccB7I	CCANNNNNTGG	1 cut(s)	436
AccIII	TCCGGA	2 cut(s)	19, 359
AclWI	GGATC	3 cut(s)	61, 133, 561
AcsI	RAATTY	1 cut(s)	87
AdeI	CACNNNGTG	1 cut(s)	497
AfiI	CCNNNNNNNGG	3 cut(s)	366, 430, 436
AgsI	TTSAA	4 cut(s)	38, 221, 347, 570
AjiI	CACGTC	1 cut(s)	201
AjnI	CCWGG	3 cut(s)	429, 452, 599
AluBI	AGCT	2 cut(s)	169, 573
AluI	AGCT	2 cut(s)	169, 573
Alw21I	GWGCWC	1 cut(s)	493
AlwI	GGATC	3 cut(s)	61, 133, 561
Ama87I	CYCGRG	2 cut(s)	119, 388
Aor13HI	TCCGGA	2 cut(s)	19, 359
AoxI	GGCC	1 cut(s)	331
ApeKI	GCWGC	2 cut(s)	169, 400
ApoI	RAATTY	1 cut(s)	87
Asp700I	GAANNNNTTC	2 cut(s)	91, 252
AspLEI	GCGC	1 cut(s)	562
AsuC2I	CCSGG	1 cut(s)	367
AsuHPI	GGTGA	1 cut(s)	509
AvaI	CYCGRG	2 cut(s)	119, 388
BanI	GGYRCC	1 cut(s)	445
Bbv12I	GWGCWC	1 cut(s)	493
BbvI	GCAGC	2 cut(s)	156, 412
BccI	CCATC	1 cut(s)	176
BciT130I	CCWGG	3 cut(s)	431, 454, 601
BcnI	CCSGG	1 cut(s)	367
BfmI	CTRYAG	1 cut(s)	96
BfuAI	ACCTGC	1 cut(s)	98
BisI	GCNGC	2 cut(s)	170, 401
BlsI	GCNGC	2 cut(s)	171, 402
Bme1390I	CCNGG	4 cut(s)	367, 431, 454, 601
BmeT110I	CYCGRG	2 cut(s)	119, 388
BmgBI	CACGTC	1 cut(s)	201
BmiI	GGNNCC	3 cut(s)	364, 447, 596
BmrFI	CCNGG	4 cut(s)	367, 431, 454, 601
BmsI	GCATC	2 cut(s)	127, 220
BplI	GAGNNNNNCTC	2 cut(s)	158, 190
BpuMI	CCSGG	1 cut(s)	367
BsaJI	CCNNGG	5 cut(s)	120, 234, 453, 505, 599
BsaWI	WCCGGW	2 cut(s)	19, 359
Bsc4I	CCNNNNNNNGG	3 cut(s)	366, 430, 436
Bse1I	ACTGG	1 cut(s)	424
BseAI	TCCGGA	2 cut(s)	19, 359
BseBI	CCWGG	3 cut(s)	431, 454, 601
BseDI	CCNNGG	5 cut(s)	120, 234, 453, 505, 599
BseLI	CCNNNNNNNGG	3 cut(s)	366, 430, 436
BseMII	CTCAG	2 cut(s)	248, 368
BseNI	ACTGG	1 cut(s)	424
BseXI	GCAGC	2 cut(s)	156, 412
BshFI	GGCC	1 cut(s)	333
BshNI	GGYRCC	1 cut(s)	445
BsiHKAI	GWGCWC	1 cut(s)	493
BsiHKCI	CYCGRG	2 cut(s)	119, 388
BsiSI	CCGG	3 cut(s)	20, 360, 366
BslFI	GGGAC	1 cut(s)	550
BslI	CCNNNNNNNGG	3 cut(s)	366, 430, 436
BsmFI	GGGAC	1 cut(s)	550
BsmI	GAATGC	1 cut(s)	562
BsnI	GGCC	1 cut(s)	333
BsoBI	CYCGRG	2 cut(s)	119, 388
Bsp1286I	GDGCHC	1 cut(s)	493
Bsp13I	TCCGGA	2 cut(s)	19, 359
Bsp143I	GATC	3 cut(s)	66, 125, 553
Bsp19I	CCATGG	1 cut(s)	234
BspANI	GGCC	1 cut(s)	333
BspCNI	CTCAG	2 cut(s)	249, 367
BspEI	TCCGGA	2 cut(s)	19, 359
BspLI	GGNNCC	3 cut(s)	364, 447, 596
BspMAI	CTGCAG	1 cut(s)	100
BspMI	ACCTGC	1 cut(s)	98
BspPI	GGATC	3 cut(s)	61, 133, 561
BspT107I	GGYRCC	1 cut(s)	445
BsrI	ACTGG	1 cut(s)	424
BssECI	CCNNGG	5 cut(s)	120, 234, 453, 505, 599
BssMI	GATC	3 cut(s)	66, 125, 553
BssT1I	CCWWGG	2 cut(s)	234, 505
Bst2UI	CCWGG	3 cut(s)	431, 454, 601
Bst4CI	ACNGT	2 cut(s)	132, 147
BstAPI	GCANNNNNTGC	1 cut(s)	113
BstC8I	GCNNGC	1 cut(s)	489
BstDEI	CTNAG	3 cut(s)	156, 257, 354
BstDSI	CCRYGG	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	562
BstKTI	GATC	3 cut(s)	69, 128, 556
BstMBI	GATC	3 cut(s)	66, 125, 553
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 113
BstNI	CCWGG	3 cut(s)	431, 454, 601
BstSCI	CCNGG	4 cut(s)	365, 429, 452, 599
BstSFI	CTRYAG	1 cut(s)	96
BstV1I	GCAGC	2 cut(s)	156, 412
BstXI	CCANNNNNNTGG	1 cut(s)	460
BsuRI	GGCC	1 cut(s)	333
BtgI	CCRYGG	1 cut(s)	234
BtrI	CACGTC	1 cut(s)	201
BtsIMutI	CAGTG	1 cut(s)	431
BveI	ACCTGC	1 cut(s)	98
Cac8I	GCNNGC	1 cut(s)	489
CfoI	GCGC	1 cut(s)	562
CviAII	CATG	4 cut(s)	103, 235, 521, 582
CviJI	RGCY	6 cut(s)	169, 289, 333, 353, 434, 573
CviKI_1	RGCY	6 cut(s)	169, 289, 333, 353, 434, 573
DdeI	CTNAG	3 cut(s)	156, 257, 354
DpnI	GATC	3 cut(s)	68, 127, 555
DpnII	GATC	3 cut(s)	66, 125, 553
DraI	TTTAAA	1 cut(s)	81
DraIII	CACNNNGTG	1 cut(s)	497
Eco130I	CCWWGG	2 cut(s)	234, 505
Eco147I	AGGCCT	1 cut(s)	333
Eco88I	CYCGRG	2 cut(s)	119, 388
EcoRI	GAATTC	1 cut(s)	87
EcoRII	CCWGG	3 cut(s)	429, 452, 599
EcoT14I	CCWWGG	2 cut(s)	234, 505
ErhI	CCWWGG	2 cut(s)	234, 505
FaeI	CATG	4 cut(s)	106, 238, 524, 585
FaqI	GGGAC	1 cut(s)	550
FatI	CATG	4 cut(s)	102, 234, 520, 581
Fnu4HI	GCNGC	2 cut(s)	170, 401
Fsp4HI	GCNGC	2 cut(s)	170, 401
GlaI	GCGC	1 cut(s)	561
GluI	GCNGC	2 cut(s)	170, 401
HaeIII	GGCC	1 cut(s)	333
HapII	CCGG	3 cut(s)	20, 360, 366
HhaI	GCGC	1 cut(s)	562
Hin1II	CATG	4 cut(s)	106, 238, 524, 585
Hin6I	GCGC	1 cut(s)	560
HinP1I	GCGC	1 cut(s)	560
HinfI	GANTC	1 cut(s)	343
HpaII	CCGG	3 cut(s)	20, 360, 366
HphI	GGTGA	1 cut(s)	509
Hpy188I	TCNGA	1 cut(s)	258
Hpy188III	TCNNGA	3 cut(s)	20, 360, 548
Hpy99I	CGWCG	1 cut(s)	205
HpyAV	CCTTC	3 cut(s)	300, 331, 472
HpyCH4III	ACNGT	2 cut(s)	132, 147
HpyCH4IV	ACGT	1 cut(s)	200
HpyCH4V	TGCA	6 cut(s)	98, 116, 140, 244, 327, 400
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 113
HpyF3I	CTNAG	3 cut(s)	156, 257, 354
HpySE526I	ACGT	1 cut(s)	200
Hsp92II	CATG	4 cut(s)	106, 238, 524, 585
HspAI	GCGC	1 cut(s)	560
Kpn2I	TCCGGA	2 cut(s)	19, 359
Kzo9I	GATC	3 cut(s)	66, 125, 553
LmnI	GCTCC	1 cut(s)	22
Lsp1109I	GCAGC	2 cut(s)	156, 412
LweI	GCATC	2 cut(s)	127, 220
MaeII	ACGT	1 cut(s)	200
MaeIII	GTNAC	1 cut(s)	497
MalI	GATC	3 cut(s)	68, 127, 555
MboI	GATC	3 cut(s)	66, 125, 553
MboII	GAAGA	3 cut(s)	187, 245, 558
MhlI	GDGCHC	1 cut(s)	493
MluCI	AATT	2 cut(s)	87, 312
MmeI	TCCRAC	1 cut(s)	572
MnlI	CCTC	3 cut(s)	115, 254, 544
MroI	TCCGGA	2 cut(s)	19, 359
MroXI	GAANNNNTTC	2 cut(s)	91, 252
MseI	TTAA	2 cut(s)	72, 80
MslI	CAYNNNNRTG	1 cut(s)	525
MspI	CCGG	3 cut(s)	20, 360, 366
MspR9I	CCNGG	4 cut(s)	367, 431, 454, 601
Mva1269I	GAATGC	1 cut(s)	562
MvaI	CCWGG	3 cut(s)	431, 454, 601
MwoI	GCNNNNNNNGC	2 cut(s)	104, 113
NciI	CCSGG	1 cut(s)	367
NcoI	CCATGG	1 cut(s)	234
NdeII	GATC	3 cut(s)	66, 125, 553
NlaIII	CATG	4 cut(s)	106, 238, 524, 585
NlaIV	GGNNCC	3 cut(s)	364, 447, 596
NmuCI	GTSAC	1 cut(s)	497
PaqCI	CACCTGC	1 cut(s)	98
PceI	AGGCCT	1 cut(s)	333
PcsI	WCGNNNNNNNCGW	1 cut(s)	553
PctI	GAATGC	1 cut(s)	562
PdmI	GAANNNNTTC	2 cut(s)	91, 252
PfeI	GAWTC	1 cut(s)	343
PflMI	CCANNNNNTGG	1 cut(s)	436
PkrI	GCNGC	2 cut(s)	171, 402
Psp6I	CCWGG	3 cut(s)	429, 452, 599
PspGI	CCWGG	3 cut(s)	429, 452, 599
PspN4I	GGNNCC	3 cut(s)	364, 447, 596
PstI	CTGCAG	1 cut(s)	100
RseI	CAYNNNNRTG	1 cut(s)	525
SaqAI	TTAA	2 cut(s)	72, 80
SatI	GCNGC	2 cut(s)	170, 401
Sau3AI	GATC	3 cut(s)	66, 125, 553
ScrFI	CCNGG	4 cut(s)	367, 431, 454, 601
SduI	GDGCHC	1 cut(s)	493
SetI	ASST	9 cut(s)	112, 171, 203, 383, 451, 483, 507, 519, 575
SfaNI	GCATC	2 cut(s)	127, 220
SfcI	CTRYAG	1 cut(s)	96
SmiMI	CAYNNNNRTG	1 cut(s)	525
Sse9I	AATT	2 cut(s)	87, 312
SseBI	AGGCCT	1 cut(s)	333
StuI	AGGCCT	1 cut(s)	333
StyD4I	CCNGG	4 cut(s)	365, 429, 452, 599
StyI	CCWWGG	2 cut(s)	234, 505
TaaI	ACNGT	2 cut(s)	132, 147
TaiI	ACGT	1 cut(s)	203
TaqI	TCGA	1 cut(s)	556
TasI	AATT	2 cut(s)	87, 312
TfiI	GAWTC	1 cut(s)	343
Tru1I	TTAA	2 cut(s)	72, 80
Tru9I	TTAA	2 cut(s)	72, 80
TscAI	CASTG	1 cut(s)	431
TseFI	GTSAC	1 cut(s)	497
TseI	GCWGC	2 cut(s)	169, 400
Tsp45I	GTSAC	1 cut(s)	497
TspDTI	ATGAA	3 cut(s)	225, 509, 570
TspRI	CASTG	1 cut(s)	431
Van91I	CCANNNNNTGG	1 cut(s)	436
XapI	RAATTY	1 cut(s)	87
XmnI	GAANNNNTTC	2 cut(s)	91, 252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.