Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0000737

Physical Location & Seq

Genomic Coordinates Reverse (-)

21655288 .. 21655915

Gene Structure 628 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGTGTTGCAGGTGGGATTTGATTCAAGTGGGGAATCAAACTTACAAGGACATGGATCGCTTGGTTGCATATGAGAAGGCGTTGACCACTTGGGCTGGATGGGTTGACTCCAAAGTAGACCCCAACAAAACCAAGGTCTTCTTCCAAGGCGTTTCTCCAGATCATAGCAATGCAACAGAGTGGGGCGATCCTCAAGCAATTAACTGCAATGCACAAACAGAACCACTGCCAGGTCCAGACTTTCCAGGAAAACCACATCCAGCAGAGCAAGTACTAGAGAAAGTGTTAGGTACCGCGTCAGAGTCGGTCCATTTGCTGAGTATTACAGCTCTTTCGCAACTGCAAAAGGATGCGCACCCGTCGGTCTATGGCCTTGGCGGGCACAAGGGCATGGACTGCAACCACTGGTGTTTAGCTGGAGTTCCTGATACTTGGAATGTGCTTCTTCATGTAGCTCTTATTCCAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

157

Amino Acids

17.13

Weight (kDa)

5.52

Isoelectric Point (pI)

22.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	4 - 150	1.3e-43	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000737)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g18101 FvH4_4g19380 FvH4_5g32790 FvH4_5g32790 FvH4_6g27901 FvH4_6g37530
malus_domestica	MD09G1233400.v1.1 MD09G1233600.v1.1 MD17G1143400.v1.1 MD17G1229900.v1.1 MD17G1230000.v1.1
prunus_persica	Prupe.3G108000_v2.0.a1 Prupe.3G108000_v2.0.a1 Prupe.3G108200_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G108300_v2.0.a1 Prupe.3G168700_v2.0.a1
pyrus_communis	pycom09g15180 pycom17g23260 pycom17g23270
rosa_chinensis	RchiOBHm_Chr2g0131401 RchiOBHm_Chr2g0131411 RchiOBHm_Chr2g0131441 RchiOBHm_Chr2g0150421 RchiOBHm_Chr4g0424421
rosa_laevigata	RLG00000007476 RLG00000019182 RLG00000019183 RLG00000020497
rosa_multiflora	Rmu_sc0003445.1_g000007 Rmu_sc0003567.1_g000013 Rmu_sc0005652.1_g000008 Rmu_sc0005652.1_g000023 Rmu_sc0005652.1_g000030 Rmu_sc0016958.1_g000002 Rmu_sc0043021.1_g000001 Rmu_ssc0000480.1_g000015
rosa_roxburghii	Rroxscaffold_2G00097140 Rroxscaffold_2G00112870 Rroxscaffold_2G00112970 Rroxscaffold_2G00112980 Rroxscaffold_5G00366360
rosa_rugosa	Rorug02G0296600 Rorug02G0296700 Rorug02G0421100 Rorug02G0421200 Rorug04G0197700
rosa_samantha	Rh2AG350000 Rh2AG350400 Rh2AG480500 Rh2BG356700 Rh2BG356800 Rh2BG492600 Rh2CG335500 Rh2CG335600 Rh2CG335700 Rh2CG335900 Rh2CG466800 Rh2DG374400 Rh2DG501400 Rh4AG253500 Rh4BG258900 Rh4CG270200 Rh4DG253500
rosa_wichuraiana	Rw2G028380 Rw2G028390 Rw2G028420 Rw2G039220 Rw4G021880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	354
Acc65I	GGTACC	1 cut(s)	290
AccB1I	GGYRCC	1 cut(s)	290
AccI	GTMKAC	1 cut(s)	117
AccII	CGCG	1 cut(s)	296
AciI	CCGC	2 cut(s)	294, 378
AclWI	GGATC	2 cut(s)	63, 182
AfaI	GTAC	2 cut(s)	273, 292
AfiI	CCNNNNNNNGG	1 cut(s)	230
AgsI	TTSAA	1 cut(s)	26
AjnI	CCWGG	2 cut(s)	229, 244
AjuI	GAANNNNNNNTTGG	2 cut(s)	125, 157
AluBI	AGCT	3 cut(s)	329, 416, 455
AluI	AGCT	3 cut(s)	329, 416, 455
AlwI	GGATC	2 cut(s)	63, 182
AoxI	GGCC	1 cut(s)	370
ArsI	GACNNNNNNTTYG	2 cut(s)	120, 152
Asp718I	GGTACC	1 cut(s)	290
AspLEI	GCGC	1 cut(s)	355
AspS9I	GGNCC	2 cut(s)	233, 307
AvaII	GGWCC	2 cut(s)	233, 307
BaeGI	GKGCMC	1 cut(s)	384
BanI	GGYRCC	1 cut(s)	290
BbsI	GAAGAC	1 cut(s)	130
BccI	CCATC	1 cut(s)	93
BciT130I	CCWGG	2 cut(s)	231, 246
BfaI	CTAG	1 cut(s)	275
BmcAI	AGTACT	1 cut(s)	273
Bme1390I	CCNGG	2 cut(s)	231, 246
Bme18I	GGWCC	2 cut(s)	233, 307
BmgT120I	GGNCC	2 cut(s)	233, 307
BmiI	GGNNCC	1 cut(s)	292
BmrFI	CCNGG	2 cut(s)	231, 246
BmsI	GCATC	1 cut(s)	340
BpiI	GAAGAC	1 cut(s)	130
BpmI	CTGGAG	2 cut(s)	141, 438
BpuEI	CTTGAG	1 cut(s)	177
BsaJI	CCNNGG	3 cut(s)	132, 145, 373
Bsc4I	CCNNNNNNNGG	1 cut(s)	230
Bse1I	ACTGG	1 cut(s)	410
Bse3DI	GCAATG	2 cut(s)	175, 214
BseBI	CCWGG	2 cut(s)	231, 246
BseDI	CCNNGG	3 cut(s)	132, 145, 373
BseGI	GGATG	3 cut(s)	104, 256, 355
BseLI	CCNNNNNNNGG	1 cut(s)	230
BseMI	GCAATG	2 cut(s)	175, 214
BseMII	CTCAG	1 cut(s)	308
BseNI	ACTGG	1 cut(s)	410
BseSI	GKGCMC	1 cut(s)	384
Bsh1236I	CGCG	1 cut(s)	296
BshFI	GGCC	1 cut(s)	372
BshNI	GGYRCC	1 cut(s)	290
BslI	CCNNNNNNNGG	1 cut(s)	230
BsnI	GGCC	1 cut(s)	372
Bsp1286I	GDGCHC	1 cut(s)	384
Bsp143I	GATC	3 cut(s)	55, 160, 187
BspACI	CCGC	2 cut(s)	294, 378
BspANI	GGCC	1 cut(s)	372
BspCNI	CTCAG	1 cut(s)	309
BspFNI	CGCG	1 cut(s)	296
BspLI	GGNNCC	1 cut(s)	292
BspPI	GGATC	2 cut(s)	63, 182
BspT107I	GGYRCC	1 cut(s)	290
BsrDI	GCAATG	2 cut(s)	175, 214
BsrI	ACTGG	1 cut(s)	410
BssECI	CCNNGG	3 cut(s)	132, 145, 373
BssMI	GATC	3 cut(s)	55, 160, 187
BssT1I	CCWWGG	3 cut(s)	132, 145, 373
Bst2UI	CCWGG	2 cut(s)	231, 246
BstAPI	GCANNNNNTGC	1 cut(s)	396
BstC8I	GCNNGC	1 cut(s)	380
BstDEI	CTNAG	1 cut(s)	317
BstF5I	GGATG	3 cut(s)	104, 256, 355
BstFNI	CGCG	1 cut(s)	296
BstHHI	GCGC	1 cut(s)	355
BstKTI	GATC	3 cut(s)	58, 163, 190
BstMBI	GATC	3 cut(s)	55, 160, 187
BstMWI	GCNNNNNNNGC	1 cut(s)	396
BstNI	CCWGG	2 cut(s)	231, 246
BstSCI	CCNGG	2 cut(s)	229, 244
BstSLI	GKGCMC	1 cut(s)	384
BstUI	CGCG	1 cut(s)	296
BstV2I	GAAGAC	1 cut(s)	130
BsuRI	GGCC	1 cut(s)	372
BtsCI	GGATG	3 cut(s)	104, 256, 355
BtsI	GCAGTG	1 cut(s)	224
BtsIMutI	CAGTG	2 cut(s)	224, 403
Cac8I	GCNNGC	1 cut(s)	380
CfoI	GCGC	1 cut(s)	355
Cfr13I	GGNCC	2 cut(s)	233, 307
CseI	GACGC	1 cut(s)	285
Csp6I	GTAC	2 cut(s)	272, 291
CviAII	CATG	3 cut(s)	52, 391, 449
CviJI	RGCY	5 cut(s)	95, 329, 372, 416, 455
CviKI_1	RGCY	5 cut(s)	95, 329, 372, 416, 455
CviQI	GTAC	2 cut(s)	272, 291
DdeI	CTNAG	1 cut(s)	317
DpnI	GATC	3 cut(s)	57, 162, 189
DpnII	GATC	3 cut(s)	55, 160, 187
Eco130I	CCWWGG	3 cut(s)	132, 145, 373
Eco47I	GGWCC	2 cut(s)	233, 307
EcoRII	CCWGG	2 cut(s)	229, 244
EcoT14I	CCWWGG	3 cut(s)	132, 145, 373
ErhI	CCWWGG	3 cut(s)	132, 145, 373
FaeI	CATG	3 cut(s)	55, 394, 452
FaiI	YATR	7 cut(s)	53, 70, 72, 165, 369, 392, 450
FalI	AAGNNNNNCTT	2 cut(s)	125, 157
FatI	CATG	3 cut(s)	51, 390, 448
FauI	CCCGC	1 cut(s)	371
FauNDI	CATATG	1 cut(s)	70
FblI	GTMKAC	1 cut(s)	117
FokI	GGATG	3 cut(s)	111, 243, 362
FspAI	RTGCGCAY	1 cut(s)	354
FspBI	CTAG	1 cut(s)	275
FspI	TGCGCA	1 cut(s)	354
GlaI	GCGC	1 cut(s)	354
GsuI	CTGGAG	2 cut(s)	141, 438
HaeIII	GGCC	1 cut(s)	372
HgaI	GACGC	1 cut(s)	285
HhaI	GCGC	1 cut(s)	355
Hin1II	CATG	3 cut(s)	55, 394, 452
Hin6I	GCGC	1 cut(s)	353
HinP1I	GCGC	1 cut(s)	353
HincII	GTYRAC	2 cut(s)	84, 106
HindII	GTYRAC	2 cut(s)	84, 106
HinfI	GANTC	4 cut(s)	22, 34, 107, 302
Hpy166II	GTNNAC	3 cut(s)	84, 106, 118
Hpy188I	TCNGA	1 cut(s)	301
Hpy188III	TCNNGA	3 cut(s)	158, 236, 425
Hpy8I	GTNNAC	3 cut(s)	84, 106, 118
Hpy99I	CGWCG	1 cut(s)	364
HpyAV	CCTTC	1 cut(s)	70
HpyCH4V	TGCA	7 cut(s)	9, 68, 173, 207, 212, 343, 399
HpyF10VI	GCNNNNNNNGC	1 cut(s)	396
HpyF3I	CTNAG	1 cut(s)	317
Hsp92II	CATG	3 cut(s)	55, 394, 452
HspAI	GCGC	1 cut(s)	353
KpnI	GGTACC	1 cut(s)	294
Kzo9I	GATC	3 cut(s)	55, 160, 187
LweI	GCATC	1 cut(s)	340
MaeI	CTAG	1 cut(s)	275
MalI	GATC	3 cut(s)	57, 162, 189
MboI	GATC	3 cut(s)	55, 160, 187
MboII	GAAGA	3 cut(s)	130, 133, 437
MhlI	GDGCHC	1 cut(s)	384
MluCI	AATT	2 cut(s)	198, 466
MlyI	GAGTC	2 cut(s)	101, 311
MnlI	CCTC	1 cut(s)	201
MseI	TTAA	1 cut(s)	201
MslI	CAYNNNNRTG	1 cut(s)	168
MspR9I	CCNGG	2 cut(s)	231, 246
MvaI	CCWGG	2 cut(s)	231, 246
MvnI	CGCG	1 cut(s)	296
MwoI	GCNNNNNNNGC	1 cut(s)	396
NdeI	CATATG	1 cut(s)	70
NdeII	GATC	3 cut(s)	55, 160, 187
NlaIII	CATG	3 cut(s)	55, 394, 452
NlaIV	GGNNCC	1 cut(s)	292
NsbI	TGCGCA	1 cut(s)	354
PfeI	GAWTC	2 cut(s)	22, 34
PfoI	TCCNGGA	1 cut(s)	244
PleI	GAGTC	2 cut(s)	101, 310
PpsI	GAGTC	2 cut(s)	101, 310
Psp6I	CCWGG	2 cut(s)	229, 244
PspGI	CCWGG	2 cut(s)	229, 244
PspN4I	GGNNCC	1 cut(s)	292
PspPI	GGNCC	2 cut(s)	233, 307
RsaI	GTAC	2 cut(s)	273, 292
RsaNI	GTAC	2 cut(s)	272, 291
RseI	CAYNNNNRTG	1 cut(s)	168
SaqAI	TTAA	1 cut(s)	201
Sau3AI	GATC	3 cut(s)	55, 160, 187
Sau96I	GGNCC	2 cut(s)	233, 307
ScaI	AGTACT	1 cut(s)	273
SchI	GAGTC	2 cut(s)	101, 311
ScrFI	CCNGG	2 cut(s)	231, 246
SduI	GDGCHC	1 cut(s)	384
SetI	ASST	7 cut(s)	14, 138, 235, 292, 331, 418, 457
SfaNI	GCATC	1 cut(s)	340
SinI	GGWCC	2 cut(s)	233, 307
SmiMI	CAYNNNNRTG	1 cut(s)	168
SmlI	CTYRAG	1 cut(s)	192
SmoI	CTYRAG	1 cut(s)	192
Sse9I	AATT	2 cut(s)	198, 466
SsiI	CCGC	2 cut(s)	294, 378
SspMI	CTAG	1 cut(s)	275
StyD4I	CCNGG	2 cut(s)	229, 244
StyI	CCWWGG	3 cut(s)	132, 145, 373
TaqII	GACCGA	2 cut(s)	295, 352
TasI	AATT	2 cut(s)	198, 466
TatI	WGTACW	1 cut(s)	271
TfiI	GAWTC	2 cut(s)	22, 34
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	2 cut(s)	231, 410
TspDTI	ATGAA	1 cut(s)	437
TspRI	CASTG	2 cut(s)	231, 410
VpaK11BI	GGWCC	2 cut(s)	233, 307
XmiI	GTMKAC	1 cut(s)	117
XspI	CTAG	1 cut(s)	275
ZrmI	AGTACT	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.