Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001771

Physical Location & Seq

Genomic Coordinates Forward (+)

15675601 .. 15676923

Gene Structure 1323 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 135 bp

ATGAAACTAGATGGTCGAGATATATCTGACAACAGAGAAATTAGTATCTCCGAAGAAGTGGGCTGTCTACTTAAGCAAGCCACTAGTGTAGACAATCTTTGCAACATGTATGAAGGTTGGACACCATGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000184 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006401 GO:0006402 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019219 GO:0019222 GO:0019439 GO:0019538 GO:0019637 GO:0030258 GO:0031323 GO:0031974 GO:0031981 GO:0032204 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034655 GO:0036211 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046486 GO:0046488 GO:0046700 GO:0046777 GO:0046834 GO:0046854 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140096 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901575 GO:2001020

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

FATC PI3_PI4_kinase SMG1 WD40

Protein Analysis

44

Amino Acids

5.03

Weight (kDa)

4.29

Isoelectric Point (pI)

28.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FATC	PF02260	15 - 44	3.7e-14	FATC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001771)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0124271 RchiOBHm_Chr6g0259991 RchiOBHm_Chr6g0260001 RchiOBHm_Chr6g0260221 RchiOBHm_Chr6g0260231 RchiOBHm_Chr6g0260571 RchiOBHm_Chr6g0260691 RchiOBHm_Chr6g0260701 RchiOBHm_Chr6g0260711 RchiOBHm_Chr6g0260721
rosa_laevigata	RLG00000014488
rosa_multiflora	Rmu_co8412781.1_g000001 Rmu_sc0000588.1_g000003 Rmu_sc0002968.1_g000004 Rmu_sc0004865.1_g000013 Rmu_sc0004865.1_g000014 Rmu_sc0036322.1_g000001 Rmu_sc0036891.1_g000002
rosa_roxburghii	Rroxscaffold_2G00119970 Rroxscaffold_2G00119990 Rroxscaffold_7G00207330 Rroxscaffold_7G00207340
rosa_samantha	Rh6AG087600 Rh6AG087700 Rh6AG108700 Rh6AG109000 Rh6AG109200 Rh6AG109600 Rh6AG110100 Rh6AG110300 Rh6AG110400 Rh6AG111300 Rh6AG111400 Rh6AG111500 Rh6AG111600 Rh6BG105100 Rh6BG105200 Rh6CG076300 Rh6CG076400 Rh6CG098000 Rh6CG098700 Rh6CG100500 Rh6CG101500 Rh6CG101600 Rh6DG093400 Rh6DG093500
rosa_wichuraiana	Rw6G009400 Rw6G009470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	67, 90
AflII	CTTAAG	1 cut(s)	71
AflIII	ACRYGT	1 cut(s)	105
AhlI	ACTAGT	1 cut(s)	83
BccI	CCATC	1 cut(s)	5
BcuI	ACTAGT	1 cut(s)	83
BfaI	CTAG	2 cut(s)	8, 84
BfrI	CTTAAG	1 cut(s)	71
BsaJI	CCNNGG	1 cut(s)	125
BseDI	CCNNGG	1 cut(s)	125
Bsp19I	CCATGG	1 cut(s)	125
BspTI	CTTAAG	1 cut(s)	71
BssECI	CCNNGG	1 cut(s)	125
BssT1I	CCWWGG	1 cut(s)	125
BstAFI	CTTAAG	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	78
BstDSI	CCRYGG	1 cut(s)	125
BstNSI	RCATGY	1 cut(s)	109
BtgI	CCRYGG	1 cut(s)	125
Cac8I	GCNNGC	1 cut(s)	78
CviAII	CATG	2 cut(s)	106, 126
CviJI	RGCY	2 cut(s)	63, 80
CviKI_1	RGCY	2 cut(s)	63, 80
Eco130I	CCWWGG	1 cut(s)	125
EcoT14I	CCWWGG	1 cut(s)	125
ErhI	CCWWGG	1 cut(s)	125
FaeI	CATG	2 cut(s)	109, 129
FaiI	YATR	4 cut(s)	23, 107, 111, 127
FatI	CATG	2 cut(s)	105, 125
FblI	GTMKAC	2 cut(s)	67, 90
FspBI	CTAG	2 cut(s)	8, 84
FspEI	CC	7 cut(s)	44, 45, 64, 94, 99, 103, 112
Hin1II	CATG	2 cut(s)	109, 129
Hpy166II	GTNNAC	2 cut(s)	68, 91
Hpy188I	TCNGA	2 cut(s)	28, 52
Hpy188III	TCNNGA	1 cut(s)	17
Hpy8I	GTNNAC	2 cut(s)	68, 91
HpyAV	CCTTC	1 cut(s)	107
HpyCH4V	TGCA	1 cut(s)	102
Hsp92II	CATG	2 cut(s)	109, 129
MaeI	CTAG	2 cut(s)	8, 84
MboII	GAAGA	1 cut(s)	65
MluCI	AATT	1 cut(s)	39
MmeI	TCCRAC	1 cut(s)	98
MseI	TTAA	1 cut(s)	72
MspCI	CTTAAG	1 cut(s)	71
NcoI	CCATGG	1 cut(s)	125
NlaIII	CATG	2 cut(s)	109, 129
NspI	RCATGY	1 cut(s)	109
PciI	ACATGT	1 cut(s)	105
PscI	ACATGT	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	72
SetI	ASST	1 cut(s)	118
SgeI	CNNG	5 cut(s)	20, 29, 89, 96, 118
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
SpeI	ACTAGT	1 cut(s)	83
Sse9I	AATT	1 cut(s)	39
SspMI	CTAG	2 cut(s)	8, 84
StyI	CCWWGG	1 cut(s)	125
TaqI	TCGA	1 cut(s)	16
TasI	AATT	1 cut(s)	39
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TspDTI	ATGAA	2 cut(s)	17, 126
Vha464I	CTTAAG	1 cut(s)	71
XceI	RCATGY	1 cut(s)	109
XmiI	GTMKAC	2 cut(s)	67, 90
XspI	CTAG	2 cut(s)	8, 84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.