RchiOBHm_Chr6g0260231

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001771
Physical Location & Seq
Forward (+)
15295726 .. 15296982
1257 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23336

Sequence Viewer

Length: 360 bp
ATGAACCTGTCGGTGTGTCCTGATACTTCACGTCCTTCAAATGAGAACAGAGAGGTGGTGTTTGAGGGTAAAGATGAAATATCCTCACTGAACAAGGTTATAATTAAGGATGAAACTCGTGATGCTACATATGCTTATAGTCAAGTGGGCAGGGGTAAGCATGCTTATCCCATAAAATCTTTTACCTGCACTGTGTTTGTTTTGCCTTTTCTCCTTAGTGTGTATATTTGCTGTTTCCATCTAGCCCTTGCTCACCAAAAAGAAATTAGTATCTCCGAACAAGTGGACTATCTACTTAAGCAAGCCACTAGTGTTCTCAATCTTTGCAACATGTATGAAGGTTGGACACCATGGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006401 GO:0006402 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019219 GO:0019222 GO:0019439 GO:0019538 GO:0019637 GO:0030258 GO:0031323 GO:0031974 GO:0031981 GO:0032204 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034655 GO:0036211 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046486 GO:0046488 GO:0046700 GO:0046777 GO:0046834 GO:0046854 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140096 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901575 GO:2001020
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
FATC PI3_PI4_kinase SMG1 WD40

Protein Analysis

119

Amino Acids

13.57

Weight (kDa)

5.87

Isoelectric Point (pI)

28.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FATC PF02260 90 - 119 3.3e-14 FATC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 101
Acc36I ACCTGC 1 cut(s) 194
AflII CTTAAG 1 cut(s) 296
AflIII ACRYGT 1 cut(s) 330
AgsI TTSAA 1 cut(s) 39
AhlI ACTAGT 1 cut(s) 308
AjiI CACGTC 1 cut(s) 32
AsuHPI GGTGA 1 cut(s) 245
BauI CACGAG 1 cut(s) 117
BccI CCATC 1 cut(s) 246
BcuI ACTAGT 1 cut(s) 308
BfaI CTAG 2 cut(s) 242, 309
BfrI CTTAAG 1 cut(s) 296
BfuAI ACCTGC 1 cut(s) 194
BmgBI CACGTC 1 cut(s) 32
BmsI GCATC 1 cut(s) 112
BsaJI CCNNGG 1 cut(s) 350
BseDI CCNNGG 1 cut(s) 350
BseGI GGATG 1 cut(s) 115
BsgI GTGCAG 1 cut(s) 172
Bsp19I CCATGG 1 cut(s) 350
BspMI ACCTGC 1 cut(s) 194
BspTI CTTAAG 1 cut(s) 296
BssECI CCNNGG 1 cut(s) 350
BssSI CACGAG 1 cut(s) 117
BssT1I CCWWGG 1 cut(s) 350
Bst2BI CACGAG 1 cut(s) 117
Bst4CI ACNGT 1 cut(s) 193
BstAFI CTTAAG 1 cut(s) 296
BstC8I GCNNGC 2 cut(s) 162, 303
BstDEI CTNAG 1 cut(s) 215
BstDSI CCRYGG 1 cut(s) 350
BstF5I GGATG 1 cut(s) 115
BstMWI GCNNNNNNNGC 1 cut(s) 131
BstNSI RCATGY 2 cut(s) 164, 334
BtgI CCRYGG 1 cut(s) 350
BtrI CACGTC 1 cut(s) 32
BtsCI GGATG 1 cut(s) 115
BtsIMutI CAGTG 2 cut(s) 86, 189
BveI ACCTGC 1 cut(s) 194
Cac8I GCNNGC 2 cut(s) 162, 303
CviAII CATG 3 cut(s) 161, 331, 351
CviJI RGCY 2 cut(s) 245, 305
CviKI_1 RGCY 2 cut(s) 245, 305
DdeI CTNAG 1 cut(s) 215
Eco130I CCWWGG 1 cut(s) 350
EcoT14I CCWWGG 1 cut(s) 350
ErhI CCWWGG 1 cut(s) 350
FaeI CATG 3 cut(s) 164, 334, 354
FatI CATG 3 cut(s) 160, 330, 350
FauNDI CATATG 1 cut(s) 130
FokI GGATG 1 cut(s) 122
FspBI CTAG 2 cut(s) 242, 309
Hin1II CATG 3 cut(s) 164, 334, 354
HphI GGTGA 1 cut(s) 245
Hpy166II GTNNAC 1 cut(s) 286
Hpy188I TCNGA 1 cut(s) 277
Hpy188III TCNNGA 2 cut(s) 20, 119
Hpy8I GTNNAC 1 cut(s) 286
HpyAV CCTTC 2 cut(s) 45, 332
HpyCH4III ACNGT 1 cut(s) 193
HpyCH4IV ACGT 1 cut(s) 31
HpyCH4V TGCA 2 cut(s) 189, 327
HpyF10VI GCNNNNNNNGC 1 cut(s) 131
HpyF3I CTNAG 1 cut(s) 215
HpySE526I ACGT 1 cut(s) 31
Hsp92II CATG 3 cut(s) 164, 334, 354
LpnPI CCDG 4 cut(s) 20, 33, 136, 199
LweI GCATC 1 cut(s) 112
MaeI CTAG 2 cut(s) 242, 309
MaeII ACGT 1 cut(s) 31
MluCI AATT 2 cut(s) 102, 264
MmeI TCCRAC 1 cut(s) 323
MnlI CCTC 3 cut(s) 46, 58, 94
MseI TTAA 2 cut(s) 105, 297
MspCI CTTAAG 1 cut(s) 296
MwoI GCNNNNNNNGC 1 cut(s) 131
NcoI CCATGG 1 cut(s) 350
NdeI CATATG 1 cut(s) 130
NlaIII CATG 3 cut(s) 164, 334, 354
NspI RCATGY 2 cut(s) 164, 334
PaeI GCATGC 1 cut(s) 164
PciI ACATGT 1 cut(s) 330
PscI ACATGT 1 cut(s) 330
PsiI TTATAA 1 cut(s) 101
SaqAI TTAA 2 cut(s) 105, 297
SetI ASST 6 cut(s) 9, 34, 57, 99, 188, 343
SfaNI GCATC 1 cut(s) 112
SmlI CTYRAG 1 cut(s) 296
SmoI CTYRAG 1 cut(s) 296
SpeI ACTAGT 1 cut(s) 308
SphI GCATGC 1 cut(s) 164
Sse9I AATT 2 cut(s) 102, 264
SspMI CTAG 2 cut(s) 242, 309
StyI CCWWGG 1 cut(s) 350
TaaI ACNGT 1 cut(s) 193
TaiI ACGT 1 cut(s) 34
TasI AATT 2 cut(s) 102, 264
Tru1I TTAA 2 cut(s) 105, 297
Tru9I TTAA 2 cut(s) 105, 297
TscAI CASTG 2 cut(s) 93, 196
TspDTI ATGAA 4 cut(s) 17, 90, 126, 351
TspRI CASTG 2 cut(s) 93, 196
Vha464I CTTAAG 1 cut(s) 296
XceI RCATGY 2 cut(s) 164, 334
XspI CTAG 2 cut(s) 242, 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.