Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002968.1

Orthogroup ID

OG0001771

Physical Location & Seq

Genomic Coordinates Reverse (-)

22377 .. 23514

Gene Structure 1138 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002968.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atgaaactatatggtcgagatatatccaacaacagagaaattagtatctccgaacaagtgggctatctatttaagcaagccactagtgtagacaatctttgcaacatgtatgaagttgtccgtctgagttcaattctcagtatcatgagaagcaccgccactgcccacaaggagtctgtatcacaagtttactaccaatgcaatcagctcacttttgcacaggttgcatttggtttagaagatcttaccgcagcatacaggaatatcagaagtatcaaacatccacaatataggaaattcttgatttcgtcaatgacatctgccgaccacctcttcctttctggtctgagaatttctttgtttgataataagttaagaatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000184 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006401 GO:0006402 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019219 GO:0019222 GO:0019439 GO:0019538 GO:0019637 GO:0030258 GO:0031323 GO:0031974 GO:0031981 GO:0032204 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034655 GO:0036211 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046486 GO:0046488 GO:0046700 GO:0046777 GO:0046834 GO:0046854 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140096 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901575 GO:2001020

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

FATC PI3_PI4_kinase SMG1 WD40

Protein Analysis

127

Amino Acids

14.6

Weight (kDa)

9.39

Isoelectric Point (pI)

33.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001771)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0124271 RchiOBHm_Chr6g0259991 RchiOBHm_Chr6g0260001 RchiOBHm_Chr6g0260221 RchiOBHm_Chr6g0260231 RchiOBHm_Chr6g0260571 RchiOBHm_Chr6g0260691 RchiOBHm_Chr6g0260701 RchiOBHm_Chr6g0260711 RchiOBHm_Chr6g0260721
rosa_laevigata	RLG00000014488
rosa_multiflora	Rmu_co8412781.1_g000001 Rmu_sc0000588.1_g000003 Rmu_sc0002968.1_g000004 Rmu_sc0004865.1_g000013 Rmu_sc0004865.1_g000014 Rmu_sc0036322.1_g000001 Rmu_sc0036891.1_g000002
rosa_roxburghii	Rroxscaffold_2G00119970 Rroxscaffold_2G00119990 Rroxscaffold_7G00207330 Rroxscaffold_7G00207340
rosa_samantha	Rh6AG087600 Rh6AG087700 Rh6AG108700 Rh6AG109000 Rh6AG109200 Rh6AG109600 Rh6AG110100 Rh6AG110300 Rh6AG110400 Rh6AG111300 Rh6AG111400 Rh6AG111500 Rh6AG111600 Rh6BG105100 Rh6BG105200 Rh6CG076300 Rh6CG076400 Rh6CG098000 Rh6CG098700 Rh6CG100500 Rh6CG101500 Rh6CG101600 Rh6DG093400 Rh6DG093500
rosa_wichuraiana	Rw6G009400 Rw6G009470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	90
AciI	CCGC	2 cut(s)	156, 249
AcsI	RAATTY	2 cut(s)	296, 351
AflIII	ACRYGT	1 cut(s)	105
AgsI	TTSAA	1 cut(s)	132
AhlI	ACTAGT	1 cut(s)	83
AluBI	AGCT	1 cut(s)	208
AluI	AGCT	1 cut(s)	208
ApeKI	GCWGC	1 cut(s)	251
ApoI	RAATTY	2 cut(s)	296, 351
BbvI	GCAGC	1 cut(s)	263
BcuI	ACTAGT	1 cut(s)	83
BfaI	CTAG	1 cut(s)	84
BglII	AGATCT	1 cut(s)	241
BisI	GCNGC	1 cut(s)	252
BlsI	GCNGC	1 cut(s)	253
BseGI	GGATG	1 cut(s)	280
BseMII	CTCAG	3 cut(s)	116, 151, 338
BseXI	GCAGC	1 cut(s)	263
Bsp143I	GATC	1 cut(s)	241
BspACI	CCGC	2 cut(s)	156, 249
BspCNI	CTCAG	3 cut(s)	117, 150, 339
BspHI	TCATGA	1 cut(s)	144
BssMI	GATC	1 cut(s)	241
Bst6I	CTCTTC	1 cut(s)	338
BstAPI	GCANNNNNTGC	1 cut(s)	224
BstC8I	GCNNGC	1 cut(s)	78
BstDEI	CTNAG	3 cut(s)	125, 137, 347
BstF5I	GGATG	1 cut(s)	280
BstKTI	GATC	1 cut(s)	244
BstMBI	GATC	1 cut(s)	241
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstNSI	RCATGY	1 cut(s)	109
BstV1I	GCAGC	1 cut(s)	263
BstX2I	RGATCY	1 cut(s)	241
BstYI	RGATCY	1 cut(s)	241
BtsCI	GGATG	1 cut(s)	280
BtsI	GCAGTG	1 cut(s)	159
BtsIMutI	CAGTG	1 cut(s)	159
Cac8I	GCNNGC	1 cut(s)	78
CciI	TCATGA	1 cut(s)	144
CviAII	CATG	2 cut(s)	106, 145
CviJI	RGCY	3 cut(s)	63, 80, 208
CviKI_1	RGCY	3 cut(s)	63, 80, 208
DdeI	CTNAG	3 cut(s)	125, 137, 347
DpnI	GATC	1 cut(s)	243
DpnII	GATC	1 cut(s)	241
Eam1104I	CTCTTC	1 cut(s)	338
EarI	CTCTTC	1 cut(s)	338
FaeI	CATG	2 cut(s)	109, 148
FaiI	YATR	8 cut(s)	10, 12, 23, 107, 111, 146, 256, 291
FatI	CATG	2 cut(s)	105, 144
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	1 cut(s)	252
FokI	GGATG	1 cut(s)	267
Fsp4HI	GCNGC	1 cut(s)	252
FspBI	CTAG	1 cut(s)	84
GluI	GCNGC	1 cut(s)	252
Hin1II	CATG	2 cut(s)	109, 148
HinfI	GANTC	1 cut(s)	173
Hpy166II	GTNNAC	2 cut(s)	91, 190
Hpy188I	TCNGA	4 cut(s)	52, 126, 269, 348
Hpy188III	TCNNGA	3 cut(s)	17, 145, 301
Hpy8I	GTNNAC	2 cut(s)	91, 190
HpyCH4V	TGCA	4 cut(s)	102, 201, 218, 227
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
HpyF3I	CTNAG	3 cut(s)	125, 137, 347
Hsp92II	CATG	2 cut(s)	109, 148
Kzo9I	GATC	1 cut(s)	241
LpnPI	CCDG	3 cut(s)	206, 244, 327
Lsp1109I	GCAGC	1 cut(s)	263
MaeI	CTAG	1 cut(s)	84
MalI	GATC	1 cut(s)	243
MboI	GATC	1 cut(s)	241
MboII	GAAGA	2 cut(s)	251, 325
MflI	RGATCY	1 cut(s)	241
MluCI	AATT	4 cut(s)	39, 132, 296, 351
MlyI	GAGTC	1 cut(s)	182
MmeI	TCCRAC	1 cut(s)	51
MnlI	CCTC	1 cut(s)	341
MseI	TTAA	2 cut(s)	72, 374
MwoI	GCNNNNNNNGC	1 cut(s)	224
NdeII	GATC	1 cut(s)	241
NlaIII	CATG	2 cut(s)	109, 148
NspI	RCATGY	1 cut(s)	109
PagI	TCATGA	1 cut(s)	144
PciI	ACATGT	1 cut(s)	105
PkrI	GCNGC	1 cut(s)	253
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
PscI	ACATGT	1 cut(s)	105
PsuI	RGATCY	1 cut(s)	241
SaqAI	TTAA	2 cut(s)	72, 374
SatI	GCNGC	1 cut(s)	252
Sau3AI	GATC	1 cut(s)	241
SchI	GAGTC	1 cut(s)	182
SetI	ASST	3 cut(s)	210, 225, 333
SpeI	ACTAGT	1 cut(s)	83
Sse9I	AATT	4 cut(s)	39, 132, 296, 351
SsiI	CCGC	2 cut(s)	156, 249
SspMI	CTAG	1 cut(s)	84
TaqI	TCGA	1 cut(s)	16
TasI	AATT	4 cut(s)	39, 132, 296, 351
Tru1I	TTAA	2 cut(s)	72, 374
Tru9I	TTAA	2 cut(s)	72, 374
TscAI	CASTG	1 cut(s)	166
TseI	GCWGC	1 cut(s)	251
TspDTI	ATGAA	2 cut(s)	17, 126
TspGWI	ACGGA	1 cut(s)	110
TspRI	CASTG	1 cut(s)	166
XapI	RAATTY	2 cut(s)	296, 351
XceI	RCATGY	1 cut(s)	109
XmiI	GTMKAC	1 cut(s)	90
XspI	CTAG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.