Rh6AG111300

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001771
Physical Location & Seq
Forward (+)
16479358 .. 16480059
702 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG111300.1

Sequence Viewer

Length: 702 bp
ATGCTTGGGAGCTTGGTTGACCGCTTCGTTGGTTGGGCGCTGCTGTTGCTTAGCAATATCAGCGCCGGAGATGGGACCGCAGAATTGGCATTGGACGGCCTTCAAGAGTTTCTTAATGTTGGGGATGTTGGCGGGATCGAGAGATATGCTTTGTCAATTCTTAAAGCGTGCCAAGTTCTTCTTGAGGATGAGAGAACCTCCTTGAGTCTGTTGCACCGCCTTCTCGGTGTTTTGACTTTGATTTCATTGAAGTTTTCTAGATACTTCCAACCTCATTTTCTTGGCATTGTTGATCTGCTTCTCGGGTGGGCGTTGGTACCGGACCTTGCCGAATTGGAGAGAAGAATTGTAATGGATAGTTTCTTACAGTTTCAGAATCATTGGGACATGGATGCTTGCAGTTTGCAGTTTTCTCTGGGATTGCTGTCGAAGTTTGTAGGAGACATGGATGTTTTGATTCAGGATGTAAGTCATGGAACCCCACAACAATTCCGAAGGCTGCTCGCGTTACTTTCATGCTTTTCAACAGTATTGCAGTCCACTGCTTCTGGGTTGCTGGAAATGAATCTACTTGAACAAATTACTGAACCCCTTAGCAGAATTATTCCTCGGTTGTTGGGATGCTTATCTATGGTTGGAAGGAAATTTGGGTGGTTGGAATGGATTGGGGATTCATGGAAGTGTCTGACTTTGCTGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006401 GO:0006402 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019219 GO:0019222 GO:0019439 GO:0019538 GO:0019637 GO:0030258 GO:0031323 GO:0031974 GO:0031981 GO:0032204 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034655 GO:0036211 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046486 GO:0046488 GO:0046700 GO:0046777 GO:0046834 GO:0046854 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140096 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901575 GO:2001020
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
FATC PI3_PI4_kinase SMG1 WD40

Protein Analysis

233

Amino Acids

25.98

Weight (kDa)

4.94

Isoelectric Point (pI)

36.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 316
AccB1I GGYRCC 1 cut(s) 316
AccII CGCG 1 cut(s) 506
AciI CCGC 4 cut(s) 22, 78, 132, 217
AclWI GGATC 1 cut(s) 143
AcsI RAATTY 1 cut(s) 644
AfaI GTAC 1 cut(s) 318
AfiI CCNNNNNNNGG 1 cut(s) 72
AgsI TTSAA 4 cut(s) 104, 250, 525, 575
AjuI GAANNNNNNNTTGG 2 cut(s) 261, 293
AluBI AGCT 1 cut(s) 12
AluI AGCT 1 cut(s) 12
Alw26I GTCTC 1 cut(s) 435
AlwI GGATC 1 cut(s) 143
Ama87I CYCGRG 1 cut(s) 302
AoxI GGCC 1 cut(s) 97
ApeKI GCWGC 2 cut(s) 40, 499
ApoI RAATTY 1 cut(s) 644
Asp718I GGTACC 1 cut(s) 316
AspLEI GCGC 2 cut(s) 40, 65
AspS9I GGNCC 2 cut(s) 75, 322
AvaI CYCGRG 1 cut(s) 302
AvaII GGWCC 2 cut(s) 75, 322
BanI GGYRCC 1 cut(s) 316
BbvI GCAGC 2 cut(s) 27, 486
BccI CCATC 1 cut(s) 65
BceAI ACGGC 1 cut(s) 112
BcgI CGANNNNNNTGC 2 cut(s) 128, 162
BcoDI GTCTC 1 cut(s) 435
BfaI CTAG 1 cut(s) 258
BfoI RGCGCY 2 cut(s) 41, 66
BisI GCNGC 2 cut(s) 41, 500
BlpI GCTNAGC 1 cut(s) 50
BlsI GCNGC 2 cut(s) 42, 501
Bme18I GGWCC 2 cut(s) 75, 322
BmeT110I CYCGRG 1 cut(s) 302
BmgT120I GGNCC 2 cut(s) 75, 322
BmiI GGNNCC 3 cut(s) 76, 318, 478
BmsI GCATC 2 cut(s) 382, 611
BplI GAGNNNNNCTC 2 cut(s) 182, 214
Bpu10I CCTNAGC 1 cut(s) 593
Bpu1102I GCTNAGC 1 cut(s) 50
BpuEI CTTGAG 2 cut(s) 203, 223
BsaBI GATNNNNATC 1 cut(s) 625
BsaJI CCNNGG 1 cut(s) 608
BsaWI WCCGGW 1 cut(s) 319
Bsc4I CCNNNNNNNGG 1 cut(s) 72
Bse8I GATNNNNATC 1 cut(s) 625
BseDI CCNNGG 1 cut(s) 608
BseGI GGATG 6 cut(s) 130, 193, 397, 454, 469, 626
BseJI GATNNNNATC 1 cut(s) 625
BseLI CCNNNNNNNGG 1 cut(s) 72
BseXI GCAGC 2 cut(s) 27, 486
Bsh1236I CGCG 1 cut(s) 506
BshFI GGCC 1 cut(s) 99
BshNI GGYRCC 1 cut(s) 316
BsiHKCI CYCGRG 1 cut(s) 302
BsiSI CCGG 2 cut(s) 66, 320
BslFI GGGAC 2 cut(s) 88, 398
BslI CCNNNNNNNGG 1 cut(s) 72
BsmAI GTCTC 1 cut(s) 435
BsmFI GGGAC 2 cut(s) 88, 398
BsnI GGCC 1 cut(s) 99
BsoBI CYCGRG 1 cut(s) 302
Bsp143I GATC 2 cut(s) 135, 292
Bsp1720I GCTNAGC 1 cut(s) 50
BspACI CCGC 4 cut(s) 22, 78, 132, 217
BspANI GGCC 1 cut(s) 99
BspFNI CGCG 1 cut(s) 506
BspLI GGNNCC 3 cut(s) 76, 318, 478
BspPI GGATC 1 cut(s) 143
BspT107I GGYRCC 1 cut(s) 316
BssECI CCNNGG 1 cut(s) 608
BssMI GATC 2 cut(s) 135, 292
Bst4CI ACNGT 2 cut(s) 369, 529
BstC8I GCNNGC 4 cut(s) 169, 397, 504, 696
BstDEI CTNAG 2 cut(s) 50, 593
BstF5I GGATG 6 cut(s) 130, 193, 397, 454, 469, 626
BstFNI CGCG 1 cut(s) 506
BstH2I RGCGCY 2 cut(s) 41, 66
BstHHI GCGC 2 cut(s) 40, 65
BstKTI GATC 2 cut(s) 138, 295
BstMAI GTCTC 1 cut(s) 435
BstMBI GATC 2 cut(s) 135, 292
BstMWI GCNNNNNNNGC 3 cut(s) 46, 60, 86
BstUI CGCG 1 cut(s) 506
BstV1I GCAGC 2 cut(s) 27, 486
BsuRI GGCC 1 cut(s) 99
BtsCI GGATG 6 cut(s) 130, 193, 397, 454, 469, 626
BtsI GCAGTG 1 cut(s) 540
BtsIMutI CAGTG 1 cut(s) 540
Cac8I GCNNGC 4 cut(s) 169, 397, 504, 696
CfoI GCGC 2 cut(s) 40, 65
Cfr13I GGNCC 2 cut(s) 75, 322
Csp6I GTAC 1 cut(s) 317
CviAII CATG 5 cut(s) 388, 445, 473, 516, 675
CviJI RGCY 3 cut(s) 12, 99, 499
CviKI_1 RGCY 3 cut(s) 12, 99, 499
CviQI GTAC 1 cut(s) 317
DdeI CTNAG 2 cut(s) 50, 593
DpnI GATC 2 cut(s) 137, 294
DpnII GATC 2 cut(s) 135, 292
Eco47I GGWCC 2 cut(s) 75, 322
Eco88I CYCGRG 1 cut(s) 302
FaeI CATG 5 cut(s) 391, 448, 476, 519, 678
FaiI YATR 8 cut(s) 147, 389, 446, 474, 517, 632, 676, 700
FalI AAGNNNNNCTT 4 cut(s) 96, 128, 165, 197
FaqI GGGAC 2 cut(s) 88, 398
FatI CATG 5 cut(s) 387, 444, 472, 515, 674
FauI CCCGC 1 cut(s) 125
Fnu4HI GCNGC 2 cut(s) 41, 500
FokI GGATG 6 cut(s) 137, 200, 404, 461, 476, 633
Fsp4HI GCNGC 2 cut(s) 41, 500
FspBI CTAG 1 cut(s) 258
GlaI GCGC 2 cut(s) 39, 64
GluI GCNGC 2 cut(s) 41, 500
HaeII RGCGCY 2 cut(s) 41, 66
HaeIII GGCC 1 cut(s) 99
HapII CCGG 2 cut(s) 66, 320
HhaI GCGC 2 cut(s) 40, 65
Hin1II CATG 5 cut(s) 391, 448, 476, 519, 678
Hin6I GCGC 2 cut(s) 38, 63
HinP1I GCGC 2 cut(s) 38, 63
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HinfI GANTC 5 cut(s) 205, 376, 457, 565, 671
HpaII CCGG 2 cut(s) 66, 320
Hpy166II GTNNAC 2 cut(s) 19, 540
Hpy188I TCNGA 3 cut(s) 375, 494, 687
Hpy188III TCNNGA 5 cut(s) 104, 139, 182, 258, 461
Hpy8I GTNNAC 2 cut(s) 19, 540
HpyAV CCTTC 4 cut(s) 110, 230, 489, 633
HpyCH4III ACNGT 2 cut(s) 369, 529
HpyCH4V TGCA 4 cut(s) 214, 399, 406, 535
HpyF10VI GCNNNNNNNGC 3 cut(s) 46, 60, 86
HpyF3I CTNAG 2 cut(s) 50, 593
Hsp92II CATG 5 cut(s) 391, 448, 476, 519, 678
HspAI GCGC 2 cut(s) 38, 63
KpnI GGTACC 1 cut(s) 320
Kzo9I GATC 2 cut(s) 135, 292
LmnI GCTCC 1 cut(s) 9
LpnPI CCDG 7 cut(s) 79, 333, 401, 446, 534, 542, 680
Lsp1109I GCAGC 2 cut(s) 27, 486
LweI GCATC 2 cut(s) 382, 611
MaeI CTAG 1 cut(s) 258
MaeIII GTNAC 1 cut(s) 507
MalI GATC 2 cut(s) 137, 294
MboI GATC 2 cut(s) 135, 292
MboII GAAGA 2 cut(s) 170, 354
MluCI AATT 8 cut(s) 83, 156, 332, 345, 488, 579, 600, 644
MlyI GAGTC 1 cut(s) 214
MmeI TCCRAC 3 cut(s) 292, 616, 636
MnlI CCTC 4 cut(s) 178, 208, 282, 618
MseI TTAA 2 cut(s) 114, 162
MslI CAYNNNNRTG 1 cut(s) 679
MspI CCGG 2 cut(s) 66, 320
MvnI CGCG 1 cut(s) 506
MwoI GCNNNNNNNGC 3 cut(s) 46, 60, 86
NdeII GATC 2 cut(s) 135, 292
NlaIII CATG 5 cut(s) 391, 448, 476, 519, 678
NlaIV GGNNCC 3 cut(s) 76, 318, 478
PfeI GAWTC 4 cut(s) 376, 457, 565, 671
PkrI GCNGC 2 cut(s) 42, 501
PleI GAGTC 1 cut(s) 213
PpsI GAGTC 1 cut(s) 213
PspN4I GGNNCC 3 cut(s) 76, 318, 478
PspPI GGNCC 2 cut(s) 75, 322
RsaI GTAC 1 cut(s) 318
RsaNI GTAC 1 cut(s) 317
RseI CAYNNNNRTG 1 cut(s) 679
SaqAI TTAA 2 cut(s) 114, 162
SatI GCNGC 2 cut(s) 41, 500
Sau3AI GATC 2 cut(s) 135, 292
Sau96I GGNCC 2 cut(s) 75, 322
SchI GAGTC 1 cut(s) 214
SetI ASST 4 cut(s) 14, 200, 274, 327
SfaNI GCATC 2 cut(s) 382, 611
SinI GGWCC 2 cut(s) 75, 322
SmiMI CAYNNNNRTG 1 cut(s) 679
SmlI CTYRAG 2 cut(s) 182, 202
SmoI CTYRAG 2 cut(s) 182, 202
Sse9I AATT 8 cut(s) 83, 156, 332, 345, 488, 579, 600, 644
SsiI CCGC 4 cut(s) 22, 78, 132, 217
SspMI CTAG 1 cut(s) 258
TaaI ACNGT 2 cut(s) 369, 529
TaqI TCGA 2 cut(s) 138, 428
TasI AATT 8 cut(s) 83, 156, 332, 345, 488, 579, 600, 644
TfiI GAWTC 4 cut(s) 376, 457, 565, 671
Tru1I TTAA 2 cut(s) 114, 162
Tru9I TTAA 2 cut(s) 114, 162
TscAI CASTG 1 cut(s) 547
TseI GCWGC 2 cut(s) 40, 499
TspDTI ATGAA 4 cut(s) 234, 504, 578, 663
TspRI CASTG 1 cut(s) 547
VpaK11BI GGWCC 2 cut(s) 75, 322
XapI RAATTY 1 cut(s) 644
XbaI TCTAGA 1 cut(s) 257
XspI CTAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.