RchiOBHm_Chr6g0260221

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001771
Physical Location & Seq
Forward (+)
15293774 .. 15295109
1336 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23335

Sequence Viewer

Length: 528 bp
ATGAATATTGTTTCTTTTACCCATGTGGTCTTAGGTTCAAACATCCTCATGGTACCTATCGGGCTATTTGCTAGGGTTTCTTCACTTCCTTGTCGCATAAAGATTTGTAGGGTTTGGCAGGTCCTTGCAATAACTGAAGATCTACATGATGTTCACAGTCTAGGAAAGGAGGCTGCTGCAGTTCATCGTTCTCTTGTGGAAGACCTTTCAAAGTTTTATTTGTTCCTGGTGTTCAAGATGATAAATGTTTCTACATTGTATGATTTACTATTTATGTTGATAACCACCTTTGCAAATGCAATTCTTTTTCCACTGGAAACAGTATTGTCCAAAGATGTAGCTGCTATGACTGATGCTATATGTAGGGAAAGAGAGACCAAGATGGAAATATCTCTGATTCATGGACAAGCCATATACCAGTCCTATTCTTTAAAAATCAGGGAGGCTTGCCAGACCTTAGATCCCTTGGTGCCCTCACTTACTTCATCTGTGAAGGGGCTCTATTCTATGTTGACCAGGCCTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006401 GO:0006402 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019219 GO:0019222 GO:0019439 GO:0019538 GO:0019637 GO:0030258 GO:0031323 GO:0031974 GO:0031981 GO:0032204 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034655 GO:0036211 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046486 GO:0046488 GO:0046700 GO:0046777 GO:0046834 GO:0046854 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140096 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901575 GO:2001020
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
FATC PI3_PI4_kinase SMG1 WD40

Protein Analysis

175

Amino Acids

19.59

Weight (kDa)

7.71

Isoelectric Point (pI)

40.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 109
Acc65I GGTACC 1 cut(s) 52
AccB1I GGYRCC 2 cut(s) 52, 469
AclWI GGATC 1 cut(s) 455
AcuI CTGAAG 1 cut(s) 156
AfaI GTAC 1 cut(s) 54
AgsI TTSAA 3 cut(s) 39, 210, 235
AjnI CCWGG 2 cut(s) 225, 515
AluBI AGCT 1 cut(s) 341
AluI AGCT 1 cut(s) 341
Alw26I GTCTC 1 cut(s) 368
AlwI GGATC 1 cut(s) 455
AoxI GGCC 1 cut(s) 518
ApeKI GCWGC 3 cut(s) 173, 176, 341
Asp718I GGTACC 1 cut(s) 52
AspS9I GGNCC 1 cut(s) 121
AvaII GGWCC 1 cut(s) 121
BaeGI GKGCMC 1 cut(s) 474
BanI GGYRCC 2 cut(s) 52, 469
BanII GRGCYC 1 cut(s) 501
BbsI GAAGAC 1 cut(s) 207
BbvI GCAGC 3 cut(s) 160, 163, 328
BccI CCATC 1 cut(s) 376
BciT130I CCWGG 2 cut(s) 227, 517
BcoDI GTCTC 1 cut(s) 368
BfaI CTAG 2 cut(s) 72, 161
BfmI CTRYAG 1 cut(s) 177
BfuAI ACCTGC 1 cut(s) 109
BglII AGATCT 1 cut(s) 139
BisI GCNGC 3 cut(s) 174, 177, 342
BlsI GCNGC 3 cut(s) 175, 178, 343
Bme1390I CCNGG 2 cut(s) 227, 517
Bme18I GGWCC 1 cut(s) 121
BmgT120I GGNCC 1 cut(s) 121
BmiI GGNNCC 2 cut(s) 54, 471
BmrFI CCNGG 2 cut(s) 227, 517
BmsI GCATC 1 cut(s) 343
BpiI GAAGAC 1 cut(s) 207
BsaI GGTCTC 1 cut(s) 368
BsaJI CCNNGG 1 cut(s) 465
Bse1I ACTGG 2 cut(s) 318, 418
BseBI CCWGG 2 cut(s) 227, 517
BseDI CCNNGG 1 cut(s) 465
BseGI GGATG 1 cut(s) 42
BseNI ACTGG 2 cut(s) 318, 418
BseSI GKGCMC 1 cut(s) 474
BseXI GCAGC 3 cut(s) 160, 163, 328
BshFI GGCC 1 cut(s) 520
BshNI GGYRCC 2 cut(s) 52, 469
BsmAI GTCTC 1 cut(s) 368
BsnI GGCC 1 cut(s) 520
Bso31I GGTCTC 1 cut(s) 368
Bsp1286I GDGCHC 2 cut(s) 474, 501
Bsp143I GATC 2 cut(s) 139, 460
BspANI GGCC 1 cut(s) 520
BspLI GGNNCC 2 cut(s) 54, 471
BspMAI CTGCAG 1 cut(s) 181
BspMI ACCTGC 1 cut(s) 109
BspPI GGATC 1 cut(s) 455
BspT107I GGYRCC 2 cut(s) 52, 469
BspTNI GGTCTC 1 cut(s) 368
BsrI ACTGG 2 cut(s) 318, 418
BssECI CCNNGG 1 cut(s) 465
BssMI GATC 2 cut(s) 139, 460
BssT1I CCWWGG 1 cut(s) 465
Bst2UI CCWGG 2 cut(s) 227, 517
Bst4CI ACNGT 2 cut(s) 158, 322
BstC8I GCNNGC 2 cut(s) 448, 522
BstDEI CTNAG 2 cut(s) 31, 457
BstF5I GGATG 1 cut(s) 42
BstKTI GATC 2 cut(s) 142, 463
BstMAI GTCTC 1 cut(s) 368
BstMBI GATC 2 cut(s) 139, 460
BstNI CCWGG 2 cut(s) 227, 517
BstSCI CCNGG 2 cut(s) 225, 515
BstSFI CTRYAG 1 cut(s) 177
BstSLI GKGCMC 1 cut(s) 474
BstV1I GCAGC 3 cut(s) 160, 163, 328
BstV2I GAAGAC 1 cut(s) 207
BstX2I RGATCY 2 cut(s) 139, 460
BstYI RGATCY 2 cut(s) 139, 460
BsuRI GGCC 1 cut(s) 520
BtsCI GGATG 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 311
BveI ACCTGC 1 cut(s) 109
Cac8I GCNNGC 2 cut(s) 448, 522
Cfr13I GGNCC 1 cut(s) 121
Csp6I GTAC 1 cut(s) 53
CviAII CATG 5 cut(s) 23, 49, 146, 401, 525
CviJI RGCY 7 cut(s) 64, 173, 341, 410, 446, 499, 520
CviKI_1 RGCY 7 cut(s) 64, 173, 341, 410, 446, 499, 520
CviQI GTAC 1 cut(s) 53
DdeI CTNAG 2 cut(s) 31, 457
DpnI GATC 2 cut(s) 141, 462
DpnII GATC 2 cut(s) 139, 460
DraI TTTAAA 1 cut(s) 432
Eco130I CCWWGG 1 cut(s) 465
Eco147I AGGCCT 1 cut(s) 520
Eco24I GRGCYC 1 cut(s) 501
Eco31I GGTCTC 1 cut(s) 368
Eco47I GGWCC 1 cut(s) 121
Eco57I CTGAAG 1 cut(s) 156
EcoO109I RGGNCCY 1 cut(s) 121
EcoRII CCWGG 2 cut(s) 225, 515
EcoT14I CCWWGG 1 cut(s) 465
EcoT38I GRGCYC 1 cut(s) 501
ErhI CCWWGG 1 cut(s) 465
FaeI CATG 5 cut(s) 26, 52, 149, 404, 528
FatI CATG 5 cut(s) 22, 48, 145, 400, 524
Fnu4HI GCNGC 3 cut(s) 174, 177, 342
FokI GGATG 1 cut(s) 29
FriOI GRGCYC 1 cut(s) 501
Fsp4HI GCNGC 3 cut(s) 174, 177, 342
FspBI CTAG 2 cut(s) 72, 161
GluI GCNGC 3 cut(s) 174, 177, 342
HaeIII GGCC 1 cut(s) 520
Hin1II CATG 5 cut(s) 26, 52, 149, 404, 528
HincII GTYRAC 1 cut(s) 513
HindII GTYRAC 1 cut(s) 513
HinfI GANTC 1 cut(s) 397
Hpy166II GTNNAC 2 cut(s) 154, 513
Hpy188I TCNGA 1 cut(s) 396
Hpy188III TCNNGA 1 cut(s) 235
Hpy8I GTNNAC 2 cut(s) 154, 513
HpyAV CCTTC 1 cut(s) 487
HpyCH4III ACNGT 2 cut(s) 158, 322
HpyCH4V TGCA 5 cut(s) 128, 179, 293, 299, 524
HpyF3I CTNAG 2 cut(s) 31, 457
Hsp92II CATG 5 cut(s) 26, 52, 149, 404, 528
KpnI GGTACC 1 cut(s) 56
Kzo9I GATC 2 cut(s) 139, 460
LpnPI CCDG 8 cut(s) 104, 212, 239, 299, 424, 431, 464, 502
Lsp1109I GCAGC 3 cut(s) 160, 163, 328
LweI GCATC 1 cut(s) 343
MaeI CTAG 2 cut(s) 72, 161
MalI GATC 2 cut(s) 141, 462
MboI GATC 2 cut(s) 139, 460
MboII GAAGA 3 cut(s) 72, 149, 212
MflI RGATCY 2 cut(s) 139, 460
MhlI GDGCHC 2 cut(s) 474, 501
MluCI AATT 1 cut(s) 300
MnlI CCTC 4 cut(s) 56, 163, 436, 484
MseI TTAA 1 cut(s) 431
MslI CAYNNNNRTG 1 cut(s) 47
MspR9I CCNGG 2 cut(s) 227, 517
MvaI CCWGG 2 cut(s) 227, 517
NdeII GATC 2 cut(s) 139, 460
NlaIII CATG 5 cut(s) 26, 52, 149, 404, 528
NlaIV GGNNCC 2 cut(s) 54, 471
PceI AGGCCT 1 cut(s) 520
PfeI GAWTC 1 cut(s) 397
PkrI GCNGC 3 cut(s) 175, 178, 343
PpuMI RGGWCCY 1 cut(s) 121
Psp5II RGGWCCY 1 cut(s) 121
Psp6I CCWGG 2 cut(s) 225, 515
PspGI CCWGG 2 cut(s) 225, 515
PspN4I GGNNCC 2 cut(s) 54, 471
PspPI GGNCC 1 cut(s) 121
PspPPI RGGWCCY 1 cut(s) 121
PstI CTGCAG 1 cut(s) 181
PsuI RGATCY 2 cut(s) 139, 460
RsaI GTAC 1 cut(s) 54
RsaNI GTAC 1 cut(s) 53
RseI CAYNNNNRTG 1 cut(s) 47
SaqAI TTAA 1 cut(s) 431
SatI GCNGC 3 cut(s) 174, 177, 342
Sau3AI GATC 2 cut(s) 139, 460
Sau96I GGNCC 1 cut(s) 121
ScrFI CCNGG 2 cut(s) 227, 517
SduI GDGCHC 2 cut(s) 474, 501
SetI ASST 7 cut(s) 37, 58, 123, 207, 290, 343, 458
SfaNI GCATC 1 cut(s) 343
SfcI CTRYAG 1 cut(s) 177
SinI GGWCC 1 cut(s) 121
SmiMI CAYNNNNRTG 1 cut(s) 47
Sse9I AATT 1 cut(s) 300
SseBI AGGCCT 1 cut(s) 520
SspI AATATT 1 cut(s) 7
SspMI CTAG 2 cut(s) 72, 161
StuI AGGCCT 1 cut(s) 520
StyD4I CCNGG 2 cut(s) 225, 515
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 2 cut(s) 158, 322
TasI AATT 1 cut(s) 300
TfiI GAWTC 1 cut(s) 397
Tru1I TTAA 1 cut(s) 431
Tru9I TTAA 1 cut(s) 431
TscAI CASTG 1 cut(s) 318
TseI GCWGC 3 cut(s) 173, 176, 341
TspDTI ATGAA 4 cut(s) 17, 173, 389, 474
TspRI CASTG 1 cut(s) 318
VpaK11BI GGWCC 1 cut(s) 121
XspI CTAG 2 cut(s) 72, 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.