Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001771

Physical Location & Seq

Genomic Coordinates Forward (+)

37634271 .. 37636738

Gene Structure 2468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ49649

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGAGAAGCACTGCCACTGCCCACAAGGAGTCTGTATCACAAGTTTACTACCAATGCAATCAGCTCACTTTTGCACAGGTTGCATTTGGTTTAGAAGATCTTACCTCAGCATACAGGAATATCAGAAGTATCAAACATCCACAATATAGGAAATTCTTGATTTCGTCAATGACATCTGCCGATCACCTCTTCCTTTCTGGTCTGAGAATTTCTTTGTTTGATAATAAGTTAAGAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

79

Amino Acids

9.13

Weight (kDa)

9.8

Isoelectric Point (pI)

39.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001771)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0124271 RchiOBHm_Chr6g0259991 RchiOBHm_Chr6g0260001 RchiOBHm_Chr6g0260221 RchiOBHm_Chr6g0260231 RchiOBHm_Chr6g0260571 RchiOBHm_Chr6g0260691 RchiOBHm_Chr6g0260701 RchiOBHm_Chr6g0260711 RchiOBHm_Chr6g0260721
rosa_laevigata	RLG00000014488
rosa_multiflora	Rmu_co8412781.1_g000001 Rmu_sc0000588.1_g000003 Rmu_sc0002968.1_g000004 Rmu_sc0004865.1_g000013 Rmu_sc0004865.1_g000014 Rmu_sc0036322.1_g000001 Rmu_sc0036891.1_g000002
rosa_roxburghii	Rroxscaffold_2G00119970 Rroxscaffold_2G00119990 Rroxscaffold_7G00207330 Rroxscaffold_7G00207340
rosa_samantha	Rh6AG087600 Rh6AG087700 Rh6AG108700 Rh6AG109000 Rh6AG109200 Rh6AG109600 Rh6AG110100 Rh6AG110300 Rh6AG110400 Rh6AG111300 Rh6AG111400 Rh6AG111500 Rh6AG111600 Rh6BG105100 Rh6BG105200 Rh6CG076300 Rh6CG076400 Rh6CG098000 Rh6CG098700 Rh6CG100500 Rh6CG101500 Rh6CG101600 Rh6DG093400 Rh6DG093500
rosa_wichuraiana	Rw6G009400 Rw6G009470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	152, 207
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
ApoI	RAATTY	2 cut(s)	152, 207
AsuHPI	GGTGA	1 cut(s)	176
BbvCI	CCTCAGC	1 cut(s)	106
BglII	AGATCT	1 cut(s)	97
Bpu10I	CCTNAGC	1 cut(s)	106
BseGI	GGATG	1 cut(s)	136
BseMII	CTCAG	2 cut(s)	120, 194
Bsp143I	GATC	2 cut(s)	97, 181
BspCNI	CTCAG	2 cut(s)	119, 195
BssMI	GATC	2 cut(s)	97, 181
Bst6I	CTCTTC	1 cut(s)	194
BstAPI	GCANNNNNTGC	1 cut(s)	80
BstDEI	CTNAG	2 cut(s)	106, 203
BstF5I	GGATG	1 cut(s)	136
BstKTI	GATC	2 cut(s)	100, 184
BstMBI	GATC	2 cut(s)	97, 181
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstX2I	RGATCY	1 cut(s)	97
BstYI	RGATCY	1 cut(s)	97
BtsCI	GGATG	1 cut(s)	136
BtsI	GCAGTG	2 cut(s)	9, 15
BtsIMutI	CAGTG	2 cut(s)	9, 15
CviJI	RGCY	1 cut(s)	64
CviKI_1	RGCY	1 cut(s)	64
DdeI	CTNAG	2 cut(s)	106, 203
DpnI	GATC	2 cut(s)	99, 183
DpnII	GATC	2 cut(s)	97, 181
Eam1104I	CTCTTC	1 cut(s)	194
EarI	CTCTTC	1 cut(s)	194
FaiI	YATR	2 cut(s)	112, 147
FokI	GGATG	1 cut(s)	123
HinfI	GANTC	1 cut(s)	29
HphI	GGTGA	1 cut(s)	176
Hpy166II	GTNNAC	1 cut(s)	46
Hpy188I	TCNGA	2 cut(s)	125, 204
Hpy188III	TCNNGA	1 cut(s)	157
Hpy8I	GTNNAC	1 cut(s)	46
HpyCH4V	TGCA	3 cut(s)	57, 74, 83
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	2 cut(s)	106, 203
Kzo9I	GATC	2 cut(s)	97, 181
LpnPI	CCDG	3 cut(s)	62, 100, 183
MalI	GATC	2 cut(s)	99, 183
MboI	GATC	2 cut(s)	97, 181
MboII	GAAGA	2 cut(s)	107, 181
MflI	RGATCY	1 cut(s)	97
MluCI	AATT	2 cut(s)	152, 207
MlyI	GAGTC	1 cut(s)	38
MnlI	CCTC	2 cut(s)	115, 197
MseI	TTAA	1 cut(s)	230
MwoI	GCNNNNNNNGC	1 cut(s)	80
NdeII	GATC	2 cut(s)	97, 181
PleI	GAGTC	1 cut(s)	37
PpsI	GAGTC	1 cut(s)	37
PsuI	RGATCY	1 cut(s)	97
SaqAI	TTAA	1 cut(s)	230
Sau3AI	GATC	2 cut(s)	97, 181
SchI	GAGTC	1 cut(s)	38
SetI	ASST	4 cut(s)	66, 81, 107, 189
SgeI	CNNG	6 cut(s)	37, 53, 89, 127, 169, 210
Sse9I	AATT	2 cut(s)	152, 207
TasI	AATT	2 cut(s)	152, 207
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
TscAI	CASTG	2 cut(s)	16, 22
TspRI	CASTG	2 cut(s)	16, 22
XapI	RAATTY	2 cut(s)	152, 207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.