RchiOBHm_Chr6g0260701

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001771
Physical Location & Seq
Forward (+)
15672010 .. 15674369
2360 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23380

Sequence Viewer

Length: 663 bp
ATGAGTATGGTCCTTGCAATAACTGAAGATCTACATGATGTTCACAGTCTAGGAAAGGAGGCTGCTGCAGTTCATCGTTCTCTTGTGGAAGACCTTTCAAAGGCAAATGCAATTCTTCTTCCACTGGAAACAGTATTGTCCAAAGATGTAGCTGCTATCACTGATGTTATGTGTAGGGAAAGAGCGACCAATATGGAAATATCTCCGATTCATGGACAAGCCATATACCAGTCCTATTCTTTAAAAATCAGGGAGGCTTGCCAGACCTTACATCCCTTGGTGCCCTCACTTACCTCATCTGTGAAGGGGCTCTATTCTATGTTGACCAGGCTTGCACGAACTGCAAGTCTTCATGCTGGGGATCTTCATAAAGCTCTTGAAGGACTAGGAGAAAGCCAGGAAGTAGAATCGCCAGTAACTGATGTATCAAGGCCAGATCTTGCTACTGATGCTGCTGGGTTTGATGACAAGGAGAGAGAGAACCTCTCCATGTCAAATGGTGAGAGCATCAAAGATTTTGTTGGCATTGGACTTCCTTTGGAAGATAAAGGATGGTTATCTCCACCAGATAGTATCTGCAGTAGTAGTACAGATTCTGGCATTTCCTTGCCTGAAATGAGTCTTCCAGTTAGCTTCAATGATCAAGAAGATATAAAGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006401 GO:0006402 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019219 GO:0019222 GO:0019439 GO:0019538 GO:0019637 GO:0030258 GO:0031323 GO:0031974 GO:0031981 GO:0032204 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034655 GO:0036211 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046486 GO:0046488 GO:0046700 GO:0046777 GO:0046834 GO:0046854 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140096 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901575 GO:2001020
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
FATC PI3_PI4_kinase SMG1 WD40

Protein Analysis

220

Amino Acids

23.73

Weight (kDa)

4.7

Isoelectric Point (pI)

49.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 280
AclWI GGATC 1 cut(s) 369
AcuI CTGAAG 1 cut(s) 45
AfaI GTAC 1 cut(s) 589
AfiI CCNNNNNNNGG 2 cut(s) 100, 212
AgsI TTSAA 3 cut(s) 99, 380, 637
AjnI CCWGG 2 cut(s) 326, 396
AluBI AGCT 3 cut(s) 152, 374, 633
AluI AGCT 3 cut(s) 152, 374, 633
AlwI GGATC 1 cut(s) 369
AlwNI CAGNNNCTG 2 cut(s) 419, 596
AoxI GGCC 1 cut(s) 431
ApeKI GCWGC 4 cut(s) 62, 65, 152, 452
ArsI GACNNNNNNTTYG 2 cut(s) 331, 363
AspS9I GGNCC 1 cut(s) 10
AsuHPI GGTGA 1 cut(s) 512
AvaII GGWCC 1 cut(s) 10
BaeGI GKGCMC 1 cut(s) 285
BaeI ACNNNNGTAYC 2 cut(s) 408, 441
BanI GGYRCC 1 cut(s) 280
BanII GRGCYC 1 cut(s) 312
BbsI GAAGAC 3 cut(s) 96, 341, 614
BbvI GCAGC 4 cut(s) 49, 52, 139, 439
BccI CCATC 1 cut(s) 546
BciT130I CCWGG 2 cut(s) 328, 398
BclI TGATCA 1 cut(s) 640
BfaI CTAG 2 cut(s) 50, 386
BfmI CTRYAG 2 cut(s) 66, 577
BglII AGATCT 2 cut(s) 28, 436
BisI GCNGC 4 cut(s) 63, 66, 153, 453
BlsI GCNGC 4 cut(s) 64, 67, 154, 454
Bme1390I CCNGG 2 cut(s) 328, 398
Bme18I GGWCC 1 cut(s) 10
BmgT120I GGNCC 1 cut(s) 10
BmiI GGNNCC 1 cut(s) 282
BmrFI CCNGG 2 cut(s) 328, 398
BmsI GCATC 2 cut(s) 439, 516
BpiI GAAGAC 3 cut(s) 96, 341, 614
BplI GAGNNNNNCTC 4 cut(s) 468, 500, 470, 502
BsaBI GATNNNNATC 1 cut(s) 556
BsaJI CCNNGG 1 cut(s) 276
Bsc4I CCNNNNNNNGG 2 cut(s) 100, 212
Bse1I ACTGG 4 cut(s) 129, 229, 413, 626
Bse8I GATNNNNATC 1 cut(s) 556
BseBI CCWGG 2 cut(s) 328, 398
BseDI CCNNGG 1 cut(s) 276
BseGI GGATG 2 cut(s) 271, 557
BseJI GATNNNNATC 1 cut(s) 556
BseLI CCNNNNNNNGG 2 cut(s) 100, 212
BseNI ACTGG 4 cut(s) 129, 229, 413, 626
BseSI GKGCMC 1 cut(s) 285
BseXI GCAGC 4 cut(s) 49, 52, 139, 439
BseYI CCCAGC 2 cut(s) 356, 455
BshFI GGCC 1 cut(s) 433
BshNI GGYRCC 1 cut(s) 280
BslI CCNNNNNNNGG 2 cut(s) 100, 212
BsnI GGCC 1 cut(s) 433
Bsp1286I GDGCHC 2 cut(s) 285, 312
Bsp143I GATC 4 cut(s) 28, 361, 436, 640
BspANI GGCC 1 cut(s) 433
BspLI GGNNCC 1 cut(s) 282
BspMAI CTGCAG 2 cut(s) 70, 581
BspPI GGATC 1 cut(s) 369
BspT107I GGYRCC 1 cut(s) 280
BsrI ACTGG 4 cut(s) 129, 229, 413, 626
BssECI CCNNGG 1 cut(s) 276
BssMI GATC 4 cut(s) 28, 361, 436, 640
BssT1I CCWWGG 1 cut(s) 276
Bst2UI CCWGG 2 cut(s) 328, 398
Bst4CI ACNGT 2 cut(s) 47, 133
BstAPI GCANNNNNTGC 1 cut(s) 341
BstC8I GCNNGC 2 cut(s) 259, 333
BstENI CCTNNNNNAGG 1 cut(s) 98
BstF5I GGATG 2 cut(s) 271, 557
BstKTI GATC 4 cut(s) 31, 364, 439, 643
BstMBI GATC 4 cut(s) 28, 361, 436, 640
BstMWI GCNNNNNNNGC 2 cut(s) 341, 449
BstNI CCWGG 2 cut(s) 328, 398
BstSCI CCNGG 2 cut(s) 326, 396
BstSFI CTRYAG 2 cut(s) 66, 577
BstSLI GKGCMC 1 cut(s) 285
BstV1I GCAGC 4 cut(s) 49, 52, 139, 439
BstV2I GAAGAC 3 cut(s) 96, 341, 614
BstX2I RGATCY 3 cut(s) 28, 361, 436
BstYI RGATCY 3 cut(s) 28, 361, 436
BsuRI GGCC 1 cut(s) 433
BtsCI GGATG 2 cut(s) 271, 557
BtsIMutI CAGTG 2 cut(s) 122, 159
Cac8I GCNNGC 2 cut(s) 259, 333
CaiI CAGNNNCTG 2 cut(s) 419, 596
Cfr13I GGNCC 1 cut(s) 10
Csp6I GTAC 1 cut(s) 588
CviAII CATG 4 cut(s) 35, 212, 353, 490
CviQI GTAC 1 cut(s) 588
DpnI GATC 4 cut(s) 30, 363, 438, 642
DpnII GATC 4 cut(s) 28, 361, 436, 640
DraI TTTAAA 1 cut(s) 243
Eco130I CCWWGG 1 cut(s) 276
Eco24I GRGCYC 1 cut(s) 312
Eco47I GGWCC 1 cut(s) 10
Eco57I CTGAAG 1 cut(s) 45
EcoNI CCTNNNNNAGG 1 cut(s) 98
EcoRII CCWGG 2 cut(s) 326, 396
EcoT14I CCWWGG 1 cut(s) 276
EcoT38I GRGCYC 1 cut(s) 312
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 4 cut(s) 38, 215, 356, 493
FatI CATG 4 cut(s) 34, 211, 352, 489
FbaI TGATCA 1 cut(s) 640
Fnu4HI GCNGC 4 cut(s) 63, 66, 153, 453
FokI GGATG 2 cut(s) 258, 564
FriOI GRGCYC 1 cut(s) 312
Fsp4HI GCNGC 4 cut(s) 63, 66, 153, 453
FspBI CTAG 2 cut(s) 50, 386
GluI GCNGC 4 cut(s) 63, 66, 153, 453
GsaI CCCAGC 2 cut(s) 360, 459
HaeIII GGCC 1 cut(s) 433
Hin1II CATG 4 cut(s) 38, 215, 356, 493
HincII GTYRAC 1 cut(s) 324
HindII GTYRAC 1 cut(s) 324
HinfI GANTC 4 cut(s) 208, 407, 593, 619
HphI GGTGA 1 cut(s) 512
Hpy166II GTNNAC 2 cut(s) 43, 324
Hpy188I TCNGA 1 cut(s) 207
Hpy188III TCNNGA 2 cut(s) 377, 644
Hpy8I GTNNAC 2 cut(s) 43, 324
HpyAV CCTTC 2 cut(s) 298, 374
HpyCH4III ACNGT 2 cut(s) 47, 133
HpyCH4V TGCA 6 cut(s) 17, 68, 110, 335, 344, 579
HpyF10VI GCNNNNNNNGC 2 cut(s) 341, 449
Hsp92II CATG 4 cut(s) 38, 215, 356, 493
Ksp22I TGATCA 1 cut(s) 640
Kzo9I GATC 4 cut(s) 28, 361, 436, 640
Lsp1109I GCAGC 4 cut(s) 49, 52, 139, 439
LweI GCATC 2 cut(s) 439, 516
MaeI CTAG 2 cut(s) 50, 386
MaeIII GTNAC 1 cut(s) 415
MalI GATC 4 cut(s) 30, 363, 438, 642
MboI GATC 4 cut(s) 28, 361, 436, 640
MboII GAAGA 9 cut(s) 38, 101, 107, 110, 341, 356, 554, 614, 659
MflI RGATCY 3 cut(s) 28, 361, 436
MhlI GDGCHC 2 cut(s) 285, 312
MluCI AATT 1 cut(s) 111
MlyI GAGTC 1 cut(s) 628
MnlI CCTC 5 cut(s) 52, 247, 295, 304, 494
MseI TTAA 1 cut(s) 242
MspR9I CCNGG 2 cut(s) 328, 398
MvaI CCWGG 2 cut(s) 328, 398
MwoI GCNNNNNNNGC 2 cut(s) 341, 449
NdeII GATC 4 cut(s) 28, 361, 436, 640
NlaIII CATG 4 cut(s) 38, 215, 356, 493
NlaIV GGNNCC 1 cut(s) 282
PfeI GAWTC 3 cut(s) 208, 407, 593
PkrI GCNGC 4 cut(s) 64, 67, 154, 454
PleI GAGTC 1 cut(s) 627
PpsI GAGTC 1 cut(s) 627
Psp6I CCWGG 2 cut(s) 326, 396
PspFI CCCAGC 2 cut(s) 356, 455
PspGI CCWGG 2 cut(s) 326, 396
PspN4I GGNNCC 1 cut(s) 282
PspPI GGNCC 1 cut(s) 10
PstI CTGCAG 2 cut(s) 70, 581
PstNI CAGNNNCTG 2 cut(s) 419, 596
PsuI RGATCY 3 cut(s) 28, 361, 436
RsaI GTAC 1 cut(s) 589
RsaNI GTAC 1 cut(s) 588
SaqAI TTAA 1 cut(s) 242
SatI GCNGC 4 cut(s) 63, 66, 153, 453
Sau3AI GATC 4 cut(s) 28, 361, 436, 640
Sau96I GGNCC 1 cut(s) 10
SchI GAGTC 1 cut(s) 628
ScrFI CCNGG 2 cut(s) 328, 398
SduI GDGCHC 2 cut(s) 285, 312
SetI ASST 7 cut(s) 96, 154, 269, 296, 376, 486, 635
SfaNI GCATC 2 cut(s) 439, 516
SfcI CTRYAG 2 cut(s) 66, 577
SinI GGWCC 1 cut(s) 10
Sse9I AATT 1 cut(s) 111
SspMI CTAG 2 cut(s) 50, 386
StyD4I CCNGG 2 cut(s) 326, 396
StyI CCWWGG 1 cut(s) 276
TaaI ACNGT 2 cut(s) 47, 133
TasI AATT 1 cut(s) 111
TatI WGTACW 1 cut(s) 587
TfiI GAWTC 3 cut(s) 208, 407, 593
Tru1I TTAA 1 cut(s) 242
Tru9I TTAA 1 cut(s) 242
TscAI CASTG 2 cut(s) 129, 166
TseI GCWGC 4 cut(s) 62, 65, 152, 452
TspDTI ATGAA 4 cut(s) 62, 200, 341, 356
TspRI CASTG 2 cut(s) 129, 166
VpaK11BI GGWCC 1 cut(s) 10
XagI CCTNNNNNAGG 1 cut(s) 98
XspI CTAG 2 cut(s) 50, 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.