Rh6AG108700

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001771
Physical Location & Seq
Forward (+)
15836850 .. 15851064
14215 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG108700.1

Sequence Viewer

Length: 702 bp
ATGGTTATCGAAGAACTACCGGATGAGCCTATACCTGGTAGAAACAAGGGAATCTCTATAAGGGAGGCTGAGGACTGTGTGCCAACTCAAGGTAGCATTGCTTGTGGGATTGGTCCAAGGGAGAAGGGAAAACAGTTGATGCTAGAGTACAATTCAGCTTCAAAGCATAAAGAAAGTGGGAGGCAAACTTCAACTGGGGCAGGGCTTCTCTCCGATAGATGTTATGGGGTGAGGCAAGAGGCTGCGGTGGCATATGGTGCTCTTTGTGCTGTGGTTTGCTCAATTCCTATAACTTCAAATGGAAGACAGAACCATGTTATGCTTGGGAGCTTGGTTGACCGCTTCATTGGTTGGGCCCTGCCGTTGCTTAGCAATATCAGCGCCGGAGATGGGACCGCGGAATTGGCATTGGACGGCCTGCGAGAGTTTCTTGATGTTGGGGATTTTGGTGGGATCGAGAGATATGCTTTGTCGATTCATAAAGCGTGCCAAGTTCTTGTTGAGGATGAGAGAACCTCCTTGAGTCTGTTGCACCGCCTTCTCGGTGTTTTGACTTTCATTTCGTTGAAGTTTTCTAGATACTTCCAACTTCATTTTCTTGACATTGTTGATCTGCTTCTCGGGTGGGCATTGGTACCGAACCTTGCCGAATCGGATAGACGAATTATAATGGATAGTTTCTTCCAGTTTCAGAATCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006401 GO:0006402 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019219 GO:0019222 GO:0019439 GO:0019538 GO:0019637 GO:0030258 GO:0031323 GO:0031974 GO:0031981 GO:0032204 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034655 GO:0036211 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046486 GO:0046488 GO:0046700 GO:0046777 GO:0046834 GO:0046854 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140096 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901575 GO:2001020
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
FATC PI3_PI4_kinase SMG1 WD40

Protein Analysis

233

Amino Acids

25.58

Weight (kDa)

5.53

Isoelectric Point (pI)

31.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 668
Acc65I GGTACC 1 cut(s) 634
AccB1I GGYRCC 1 cut(s) 634
AccII CGCG 1 cut(s) 398
AciI CCGC 5 cut(s) 245, 340, 396, 398, 535
AclWI GGATC 1 cut(s) 461
AfaI GTAC 2 cut(s) 149, 636
AfiI CCNNNNNNNGG 3 cut(s) 35, 89, 390
AgsI TTSAA 4 cut(s) 162, 192, 297, 568
AjnI CCWGG 1 cut(s) 34
AjuI GAANNNNNNNTTGG 2 cut(s) 579, 611
AluBI AGCT 2 cut(s) 158, 330
AluI AGCT 2 cut(s) 158, 330
Alw21I GWGCWC 1 cut(s) 262
AlwI GGATC 1 cut(s) 461
Ama87I CYCGRG 1 cut(s) 620
AoxI GGCC 2 cut(s) 354, 415
ApaI GGGCCC 1 cut(s) 358
ApeKI GCWGC 1 cut(s) 242
ArsI GACNNNNNNTTYG 2 cut(s) 544, 576
Asp718I GGTACC 1 cut(s) 634
AspLEI GCGC 1 cut(s) 383
AspS9I GGNCC 4 cut(s) 113, 354, 355, 393
AsuHPI GGTGA 1 cut(s) 241
AvaI CYCGRG 1 cut(s) 620
AvaII GGWCC 2 cut(s) 113, 393
BaeGI GKGCMC 1 cut(s) 358
BanI GGYRCC 1 cut(s) 634
BanII GRGCYC 1 cut(s) 358
BbsI GAAGAC 1 cut(s) 310
Bbv12I GWGCWC 1 cut(s) 262
BbvCI CCTCAGC 1 cut(s) 69
BbvI GCAGC 1 cut(s) 229
BccI CCATC 1 cut(s) 383
BceAI ACGGC 2 cut(s) 346, 430
BcgI CGANNNNNNTGC 2 cut(s) 446, 480
BciT130I CCWGG 1 cut(s) 36
BfaI CTAG 3 cut(s) 143, 576, 700
BfoI RGCGCY 1 cut(s) 384
BisI GCNGC 1 cut(s) 243
BlpI GCTNAGC 1 cut(s) 368
BlsI GCNGC 1 cut(s) 244
Bme1390I CCNGG 1 cut(s) 36
Bme18I GGWCC 2 cut(s) 113, 393
BmeT110I CYCGRG 1 cut(s) 620
BmgT120I GGNCC 4 cut(s) 113, 354, 355, 393
BmiI GGNNCC 3 cut(s) 356, 394, 636
BmrFI CCNGG 1 cut(s) 36
BmrI ACTGGG 1 cut(s) 204
BmsI GCATC 1 cut(s) 129
BmuI ACTGGG 1 cut(s) 204
BpiI GAAGAC 1 cut(s) 310
BplI GAGNNNNNCTC 2 cut(s) 500, 532
Bpu10I CCTNAGC 1 cut(s) 69
Bpu1102I GCTNAGC 1 cut(s) 368
BpuEI CTTGAG 2 cut(s) 72, 541
BsaJI CCNNGG 2 cut(s) 116, 396
BsaWI WCCGGW 1 cut(s) 19
Bsc4I CCNNNNNNNGG 3 cut(s) 35, 89, 390
Bse1I ACTGG 2 cut(s) 199, 685
Bse3DI GCAATG 1 cut(s) 96
BseBI CCWGG 1 cut(s) 36
BseDI CCNNGG 2 cut(s) 116, 396
BseGI GGATG 2 cut(s) 28, 511
BseLI CCNNNNNNNGG 3 cut(s) 35, 89, 390
BseMI GCAATG 1 cut(s) 96
BseMII CTCAG 1 cut(s) 60
BseNI ACTGG 2 cut(s) 199, 685
BseSI GKGCMC 1 cut(s) 358
BseXI GCAGC 1 cut(s) 229
Bsh1236I CGCG 1 cut(s) 398
BshFI GGCC 2 cut(s) 356, 417
BshNI GGYRCC 1 cut(s) 634
BsiHKAI GWGCWC 1 cut(s) 262
BsiHKCI CYCGRG 1 cut(s) 620
BsiSI CCGG 2 cut(s) 20, 384
BslFI GGGAC 1 cut(s) 406
BslI CCNNNNNNNGG 3 cut(s) 35, 89, 390
BsmFI GGGAC 1 cut(s) 406
BsnI GGCC 2 cut(s) 356, 417
BsoBI CYCGRG 1 cut(s) 620
Bsp120I GGGCCC 1 cut(s) 354
Bsp1286I GDGCHC 2 cut(s) 262, 358
Bsp143I GATC 2 cut(s) 453, 610
Bsp1720I GCTNAGC 1 cut(s) 368
BspACI CCGC 5 cut(s) 245, 340, 396, 398, 535
BspANI GGCC 2 cut(s) 356, 417
BspCNI CTCAG 1 cut(s) 61
BspFNI CGCG 1 cut(s) 398
BspLI GGNNCC 3 cut(s) 356, 394, 636
BspPI GGATC 1 cut(s) 461
BspT107I GGYRCC 1 cut(s) 634
BsrDI GCAATG 1 cut(s) 96
BsrI ACTGG 2 cut(s) 199, 685
BssECI CCNNGG 2 cut(s) 116, 396
BssMI GATC 2 cut(s) 453, 610
BssT1I CCWWGG 1 cut(s) 116
Bst2UI CCWGG 1 cut(s) 36
Bst4CI ACNGT 2 cut(s) 77, 135
BstAPI GCANNNNNTGC 1 cut(s) 257
BstC8I GCNNGC 2 cut(s) 419, 487
BstDEI CTNAG 2 cut(s) 69, 368
BstDSI CCRYGG 1 cut(s) 396
BstF5I GGATG 2 cut(s) 28, 511
BstFNI CGCG 1 cut(s) 398
BstH2I RGCGCY 1 cut(s) 384
BstHHI GCGC 1 cut(s) 383
BstKTI GATC 2 cut(s) 456, 613
BstMBI GATC 2 cut(s) 453, 610
BstMWI GCNNNNNNNGC 5 cut(s) 248, 257, 266, 378, 404
BstNI CCWGG 1 cut(s) 36
BstSCI CCNGG 1 cut(s) 34
BstSLI GKGCMC 1 cut(s) 358
BstUI CGCG 1 cut(s) 398
BstV1I GCAGC 1 cut(s) 229
BstV2I GAAGAC 1 cut(s) 310
BsuRI GGCC 2 cut(s) 356, 417
BtgI CCRYGG 1 cut(s) 396
BtsCI GGATG 2 cut(s) 28, 511
Cac8I GCNNGC 2 cut(s) 419, 487
CfoI GCGC 1 cut(s) 383
Cfr13I GGNCC 4 cut(s) 113, 354, 355, 393
Cfr42I CCGCGG 1 cut(s) 399
CsiI ACCWGGT 1 cut(s) 34
Csp6I GTAC 2 cut(s) 148, 635
CviAII CATG 1 cut(s) 314
CviJI RGCY 8 cut(s) 28, 68, 158, 205, 242, 330, 356, 417
CviKI_1 RGCY 8 cut(s) 28, 68, 158, 205, 242, 330, 356, 417
CviQI GTAC 2 cut(s) 148, 635
DdeI CTNAG 2 cut(s) 69, 368
DpnI GATC 2 cut(s) 455, 612
DpnII GATC 2 cut(s) 453, 610
Eco130I CCWWGG 1 cut(s) 116
Eco24I GRGCYC 1 cut(s) 358
Eco47I GGWCC 2 cut(s) 113, 393
Eco88I CYCGRG 1 cut(s) 620
EcoO109I RGGNCCY 1 cut(s) 355
EcoRII CCWGG 1 cut(s) 34
EcoT14I CCWWGG 1 cut(s) 116
EcoT38I GRGCYC 1 cut(s) 358
ErhI CCWWGG 1 cut(s) 116
FaeI CATG 1 cut(s) 317
FaqI GGGAC 1 cut(s) 406
FatI CATG 1 cut(s) 313
FauNDI CATATG 1 cut(s) 253
Fnu4HI GCNGC 1 cut(s) 243
FokI GGATG 2 cut(s) 35, 518
FriOI GRGCYC 1 cut(s) 358
Fsp4HI GCNGC 1 cut(s) 243
FspBI CTAG 3 cut(s) 143, 576, 700
GlaI GCGC 1 cut(s) 382
GluI GCNGC 1 cut(s) 243
HaeII RGCGCY 1 cut(s) 384
HaeIII GGCC 2 cut(s) 356, 417
HapII CCGG 2 cut(s) 20, 384
HhaI GCGC 1 cut(s) 383
Hin1II CATG 1 cut(s) 317
Hin6I GCGC 1 cut(s) 381
HinP1I GCGC 1 cut(s) 381
HincII GTYRAC 1 cut(s) 337
HindII GTYRAC 1 cut(s) 337
HinfI GANTC 5 cut(s) 51, 475, 523, 650, 694
HpaII CCGG 2 cut(s) 20, 384
HphI GGTGA 1 cut(s) 241
Hpy166II GTNNAC 1 cut(s) 337
Hpy188I TCNGA 3 cut(s) 214, 655, 693
Hpy188III TCNNGA 4 cut(s) 431, 457, 576, 599
Hpy8I GTNNAC 1 cut(s) 337
HpyAV CCTTC 2 cut(s) 118, 548
HpyCH4III ACNGT 2 cut(s) 77, 135
HpyCH4V TGCA 1 cut(s) 532
HpyF10VI GCNNNNNNNGC 5 cut(s) 248, 257, 266, 378, 404
HpyF3I CTNAG 2 cut(s) 69, 368
Hsp92II CATG 1 cut(s) 317
HspAI GCGC 1 cut(s) 381
KpnI GGTACC 1 cut(s) 638
KspI CCGCGG 1 cut(s) 399
Kzo9I GATC 2 cut(s) 453, 610
LmnI GCTCC 1 cut(s) 327
LpnPI CCDG 9 cut(s) 21, 33, 48, 180, 186, 371, 397, 431, 698
Lsp1109I GCAGC 1 cut(s) 229
LweI GCATC 1 cut(s) 129
MabI ACCWGGT 1 cut(s) 34
MaeI CTAG 3 cut(s) 143, 576, 700
MalI GATC 2 cut(s) 455, 612
MboI GATC 2 cut(s) 453, 610
MboII GAAGA 3 cut(s) 23, 315, 673
MhlI GDGCHC 2 cut(s) 262, 358
MluCI AATT 4 cut(s) 151, 282, 401, 663
MlyI GAGTC 1 cut(s) 532
MmeI TCCRAC 1 cut(s) 610
MnlI CCTC 7 cut(s) 58, 64, 174, 225, 232, 496, 526
MspA1I CMGCKG 1 cut(s) 398
MspI CCGG 2 cut(s) 20, 384
MspR9I CCNGG 1 cut(s) 36
MvaI CCWGG 1 cut(s) 36
MvnI CGCG 1 cut(s) 398
MwoI GCNNNNNNNGC 5 cut(s) 248, 257, 266, 378, 404
NdeI CATATG 1 cut(s) 253
NdeII GATC 2 cut(s) 453, 610
NlaIII CATG 1 cut(s) 317
NlaIV GGNNCC 3 cut(s) 356, 394, 636
PfeI GAWTC 4 cut(s) 51, 475, 650, 694
PkrI GCNGC 1 cut(s) 244
PleI GAGTC 1 cut(s) 531
PpsI GAGTC 1 cut(s) 531
PsiI TTATAA 1 cut(s) 668
Psp6I CCWGG 1 cut(s) 34
PspGI CCWGG 1 cut(s) 34
PspN4I GGNNCC 3 cut(s) 356, 394, 636
PspOMI GGGCCC 1 cut(s) 354
PspPI GGNCC 4 cut(s) 113, 354, 355, 393
RsaI GTAC 2 cut(s) 149, 636
RsaNI GTAC 2 cut(s) 148, 635
SacII CCGCGG 1 cut(s) 399
SatI GCNGC 1 cut(s) 243
Sau3AI GATC 2 cut(s) 453, 610
Sau96I GGNCC 4 cut(s) 113, 354, 355, 393
SchI GAGTC 1 cut(s) 532
ScrFI CCNGG 1 cut(s) 36
SduI GDGCHC 2 cut(s) 262, 358
SetI ASST 6 cut(s) 37, 94, 160, 332, 518, 645
SexAI ACCWGGT 1 cut(s) 34
SfaNI GCATC 1 cut(s) 129
Sfr303I CCGCGG 1 cut(s) 399
SgrBI CCGCGG 1 cut(s) 399
SinI GGWCC 2 cut(s) 113, 393
SmlI CTYRAG 2 cut(s) 87, 520
SmoI CTYRAG 2 cut(s) 87, 520
Sse9I AATT 4 cut(s) 151, 282, 401, 663
SsiI CCGC 5 cut(s) 245, 340, 396, 398, 535
SspMI CTAG 3 cut(s) 143, 576, 700
StyD4I CCNGG 1 cut(s) 34
StyI CCWWGG 1 cut(s) 116
TaaI ACNGT 2 cut(s) 77, 135
TaqI TCGA 3 cut(s) 9, 456, 473
TasI AATT 4 cut(s) 151, 282, 401, 663
TatI WGTACW 1 cut(s) 147
TfiI GAWTC 4 cut(s) 51, 475, 650, 694
TseI GCWGC 1 cut(s) 242
TspDTI ATGAA 4 cut(s) 334, 467, 547, 581
VpaK11BI GGWCC 2 cut(s) 113, 393
XbaI TCTAGA 1 cut(s) 575
XcmI CCANNNNNNNNNTGG 1 cut(s) 320
XspI CTAG 3 cut(s) 143, 576, 700
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.