Rh6AG109200

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001771
Physical Location & Seq
Forward (+)
15967465 .. 15968022
558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG109200.1

Sequence Viewer

Length: 558 bp
ATGCTTGGGAGCTTGGTTGACCGCTTCATTGGTTGGGCACTGCCGTTGCTTAGCTTGGTTGTCCCGTTCATTGGTTGTCCGGTTCATTGGTTGGGCTGCTGCTCACTTTACTTGCTACAGACTGAGGAGTCACTGGGTTCCTTGGGTTCTGATGGTGTACAATTTGTCATTGCACATATCATCGAGTGTTATACTTCTGTTTGTGATTGGAAATCATTAGAAATCTGGTTACTGGAGTTGCAGACACTACGTGCCAAGCATGCTGGGAAGAGTTATTGCGGTGCGCTAACGACAACTGGCAATGAAATTAATGCAATTCATGCCTTGGCACAGTATGATGAGGGTGAATATCAGGCAGCATGGGCATGCCTTGGTTTGACACCTAAAAGTAGCAGTGACCTCGCACTTGATCCCAAATTGGCCTTGCAAAGAAGTGAGCAGATGCTCTTACAGGCAATGCTTTTTCAGAATGGTGAAAAGGAAGATAAGGTGCCACATGAGTTGGAGAAGGCCAGGTCAATGCTGGAGGAAACATTGTCTGTTCTGCCGCAGTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006401 GO:0006402 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019219 GO:0019222 GO:0019439 GO:0019538 GO:0019637 GO:0030258 GO:0031323 GO:0031974 GO:0031981 GO:0032204 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034655 GO:0036211 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046486 GO:0046488 GO:0046700 GO:0046777 GO:0046834 GO:0046854 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140096 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901575 GO:2001020
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
FATC PI3_PI4_kinase SMG1 WD40

Protein Analysis

185

Amino Acids

20.44

Weight (kDa)

4.84

Isoelectric Point (pI)

49.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 556
AasI GACNNNNNNGTC 1 cut(s) 127
AccB1I GGYRCC 1 cut(s) 490
AciI CCGC 3 cut(s) 22, 279, 548
AclWI GGATC 1 cut(s) 404
AdeI CACNNNGTG 1 cut(s) 251
AfaI GTAC 1 cut(s) 159
AfiI CCNNNNNNNGG 1 cut(s) 71
AjnI CCWGG 1 cut(s) 512
AluBI AGCT 2 cut(s) 12, 54
AluI AGCT 2 cut(s) 12, 54
AlwI GGATC 1 cut(s) 404
AoxI GGCC 2 cut(s) 420, 510
ApeKI GCWGC 3 cut(s) 96, 99, 356
AseI ATTAAT 1 cut(s) 309
AspLEI GCGC 1 cut(s) 286
AsuHPI GGTGA 2 cut(s) 356, 485
BaeGI GKGCMC 1 cut(s) 40
BanI GGYRCC 1 cut(s) 490
BbvI GCAGC 3 cut(s) 83, 86, 368
BccI CCATC 1 cut(s) 146
BceAI ACGGC 1 cut(s) 28
BcgI CGANNNNNNTGC 2 cut(s) 382, 416
BciT130I CCWGG 1 cut(s) 514
BfmI CTRYAG 1 cut(s) 116
BisI GCNGC 4 cut(s) 97, 100, 357, 548
BlpI GCTNAGC 1 cut(s) 50
BlsI GCNGC 4 cut(s) 98, 101, 358, 549
Bme1390I CCNGG 1 cut(s) 514
BmiI GGNNCC 2 cut(s) 139, 492
BmrFI CCNGG 1 cut(s) 514
BmrI ACTGGG 1 cut(s) 143
BmsI GCATC 1 cut(s) 432
BmuI ACTGGG 1 cut(s) 143
BpmI CTGGAG 2 cut(s) 254, 545
Bpu1102I GCTNAGC 1 cut(s) 50
BsaAI YACGTR 1 cut(s) 251
BsaJI CCNNGG 3 cut(s) 141, 324, 370
BsaWI WCCGGW 1 cut(s) 79
Bsc4I CCNNNNNNNGG 1 cut(s) 71
Bse1I ACTGG 3 cut(s) 138, 237, 301
Bse3DI GCAATG 3 cut(s) 168, 307, 462
BseBI CCWGG 1 cut(s) 514
BseDI CCNNGG 3 cut(s) 141, 324, 370
BseLI CCNNNNNNNGG 1 cut(s) 71
BseMI GCAATG 3 cut(s) 168, 307, 462
BseMII CTCAG 1 cut(s) 114
BseNI ACTGG 3 cut(s) 138, 237, 301
BseRI GAGGAG 1 cut(s) 140
BseSI GKGCMC 1 cut(s) 40
BseXI GCAGC 3 cut(s) 83, 86, 368
BseYI CCCAGC 1 cut(s) 263
BshFI GGCC 2 cut(s) 422, 512
BshNI GGYRCC 1 cut(s) 490
BsiSI CCGG 1 cut(s) 80
BslFI GGGAC 1 cut(s) 47
BslI CCNNNNNNNGG 1 cut(s) 71
BsmFI GGGAC 1 cut(s) 47
BsnI GGCC 2 cut(s) 422, 512
Bsp1286I GDGCHC 1 cut(s) 40
Bsp1407I TGTACA 1 cut(s) 157
Bsp143I GATC 1 cut(s) 409
Bsp1720I GCTNAGC 1 cut(s) 50
BspACI CCGC 3 cut(s) 22, 279, 548
BspANI GGCC 2 cut(s) 422, 512
BspCNI CTCAG 1 cut(s) 115
BspLI GGNNCC 2 cut(s) 139, 492
BspPI GGATC 1 cut(s) 404
BspT107I GGYRCC 1 cut(s) 490
BsrDI GCAATG 3 cut(s) 168, 307, 462
BsrGI TGTACA 1 cut(s) 157
BsrI ACTGG 3 cut(s) 138, 237, 301
BssECI CCNNGG 3 cut(s) 141, 324, 370
BssMI GATC 1 cut(s) 409
BssT1I CCWWGG 3 cut(s) 141, 324, 370
Bst2UI CCWGG 1 cut(s) 514
Bst4CI ACNGT 1 cut(s) 333
Bst6I CTCTTC 1 cut(s) 263
BstAPI GCANNNNNTGC 1 cut(s) 320
BstAUI TGTACA 1 cut(s) 157
BstBAI YACGTR 1 cut(s) 251
BstC8I GCNNGC 2 cut(s) 261, 367
BstDEI CTNAG 2 cut(s) 50, 123
BstHHI GCGC 1 cut(s) 286
BstKTI GATC 1 cut(s) 412
BstMBI GATC 1 cut(s) 409
BstMWI GCNNNNNNNGC 3 cut(s) 260, 320, 362
BstNI CCWGG 1 cut(s) 514
BstNSI RCATGY 2 cut(s) 263, 369
BstSCI CCNGG 1 cut(s) 512
BstSFI CTRYAG 1 cut(s) 116
BstSLI GKGCMC 1 cut(s) 40
BstV1I GCAGC 3 cut(s) 83, 86, 368
BsuRI GGCC 2 cut(s) 422, 512
BtsI GCAGTG 2 cut(s) 38, 400
BtsIMutI CAGTG 3 cut(s) 38, 131, 400
Cac8I GCNNGC 2 cut(s) 261, 367
CfoI GCGC 1 cut(s) 286
Csp6I GTAC 1 cut(s) 158
CspCI CAANNNNNGTGG 2 cut(s) 483, 518
CviAII CATG 5 cut(s) 260, 320, 360, 366, 497
CviJI RGCY 5 cut(s) 12, 54, 96, 422, 512
CviKI_1 RGCY 5 cut(s) 12, 54, 96, 422, 512
CviQI GTAC 1 cut(s) 158
DdeI CTNAG 2 cut(s) 50, 123
DpnI GATC 1 cut(s) 411
DpnII GATC 1 cut(s) 409
DraIII CACNNNGTG 1 cut(s) 251
DrdI GACNNNNNNGTC 1 cut(s) 127
DseDI GACNNNNNNGTC 1 cut(s) 127
Eam1104I CTCTTC 1 cut(s) 263
EarI CTCTTC 1 cut(s) 263
Eco130I CCWWGG 3 cut(s) 141, 324, 370
EcoRII CCWGG 1 cut(s) 512
EcoT14I CCWWGG 3 cut(s) 141, 324, 370
ErhI CCWWGG 3 cut(s) 141, 324, 370
FaeI CATG 5 cut(s) 263, 323, 363, 369, 500
FaiI YATR 9 cut(s) 177, 192, 261, 321, 336, 361, 367, 498, 556
FaqI GGGAC 1 cut(s) 47
FatI CATG 5 cut(s) 259, 319, 359, 365, 496
Fnu4HI GCNGC 4 cut(s) 97, 100, 357, 548
Fsp4HI GCNGC 4 cut(s) 97, 100, 357, 548
GlaI GCGC 1 cut(s) 285
GluI GCNGC 4 cut(s) 97, 100, 357, 548
GsaI CCCAGC 1 cut(s) 267
GsuI CTGGAG 2 cut(s) 254, 545
HaeIII GGCC 2 cut(s) 422, 512
HapII CCGG 1 cut(s) 80
HhaI GCGC 1 cut(s) 286
Hin1II CATG 5 cut(s) 263, 323, 363, 369, 500
Hin6I GCGC 1 cut(s) 284
HinP1I GCGC 1 cut(s) 284
HincII GTYRAC 1 cut(s) 19
HindII GTYRAC 1 cut(s) 19
HinfI GANTC 1 cut(s) 128
HpaII CCGG 1 cut(s) 80
HphI GGTGA 2 cut(s) 356, 485
Hpy166II GTNNAC 2 cut(s) 19, 158
Hpy188I TCNGA 2 cut(s) 151, 468
Hpy8I GTNNAC 2 cut(s) 19, 158
HpyAV CCTTC 1 cut(s) 502
HpyCH4III ACNGT 1 cut(s) 333
HpyCH4IV ACGT 1 cut(s) 250
HpyCH4V TGCA 4 cut(s) 173, 241, 314, 427
HpyF10VI GCNNNNNNNGC 3 cut(s) 260, 320, 362
HpyF3I CTNAG 2 cut(s) 50, 123
HpySE526I ACGT 1 cut(s) 250
Hsp92II CATG 5 cut(s) 263, 323, 363, 369, 500
HspAI GCGC 1 cut(s) 284
Kzo9I GATC 1 cut(s) 409
LmnI GCTCC 1 cut(s) 9
Lsp1109I GCAGC 3 cut(s) 83, 86, 368
LweI GCATC 1 cut(s) 432
MaeII ACGT 1 cut(s) 250
MaeIII GTNAC 3 cut(s) 129, 228, 395
MalI GATC 1 cut(s) 411
MboI GATC 1 cut(s) 409
MboII GAAGA 2 cut(s) 280, 494
MhlI GDGCHC 1 cut(s) 40
MluCI AATT 4 cut(s) 161, 306, 315, 416
MlyI GAGTC 1 cut(s) 137
MmeI TCCRAC 1 cut(s) 483
MnlI CCTC 4 cut(s) 118, 334, 410, 520
MseI TTAA 1 cut(s) 309
MslI CAYNNNNRTG 1 cut(s) 364
MspI CCGG 1 cut(s) 80
MspR9I CCNGG 1 cut(s) 514
MvaI CCWGG 1 cut(s) 514
MwoI GCNNNNNNNGC 3 cut(s) 260, 320, 362
NdeII GATC 1 cut(s) 409
NlaIII CATG 5 cut(s) 263, 323, 363, 369, 500
NlaIV GGNNCC 2 cut(s) 139, 492
NmuCI GTSAC 2 cut(s) 129, 395
NspI RCATGY 2 cut(s) 263, 369
PaeI GCATGC 2 cut(s) 263, 369
PkrI GCNGC 4 cut(s) 98, 101, 358, 549
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
Ppu21I YACGTR 1 cut(s) 251
PshBI ATTAAT 1 cut(s) 309
PsiI TTATAA 1 cut(s) 556
Psp6I CCWGG 1 cut(s) 512
PspFI CCCAGC 1 cut(s) 263
PspGI CCWGG 1 cut(s) 512
PspN4I GGNNCC 2 cut(s) 139, 492
RsaI GTAC 1 cut(s) 159
RsaNI GTAC 1 cut(s) 158
RseI CAYNNNNRTG 1 cut(s) 364
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 4 cut(s) 97, 100, 357, 548
Sau3AI GATC 1 cut(s) 409
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 1 cut(s) 514
SduI GDGCHC 1 cut(s) 40
SetI ASST 7 cut(s) 14, 56, 253, 385, 402, 492, 518
SfaNI GCATC 1 cut(s) 432
SfcI CTRYAG 1 cut(s) 116
SmiMI CAYNNNNRTG 1 cut(s) 364
SphI GCATGC 2 cut(s) 263, 369
Sse9I AATT 4 cut(s) 161, 306, 315, 416
SsiI CCGC 3 cut(s) 22, 279, 548
StyD4I CCNGG 1 cut(s) 512
StyI CCWWGG 3 cut(s) 141, 324, 370
TaaI ACNGT 1 cut(s) 333
TaiI ACGT 1 cut(s) 253
TaqI TCGA 1 cut(s) 183
TasI AATT 4 cut(s) 161, 306, 315, 416
TatI WGTACW 1 cut(s) 157
TauI GCSGC 1 cut(s) 550
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TscAI CASTG 3 cut(s) 45, 138, 400
TseFI GTSAC 2 cut(s) 129, 395
TseI GCWGC 3 cut(s) 96, 99, 356
Tsp45I GTSAC 2 cut(s) 129, 395
TspDTI ATGAA 5 cut(s) 16, 58, 74, 308, 318
TspRI CASTG 3 cut(s) 45, 138, 400
VspI ATTAAT 1 cut(s) 309
XceI RCATGY 2 cut(s) 263, 369
XcmI CCANNNNNNNNNTGG 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.