Rh6CG098700

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001771
Physical Location & Seq
Forward (+)
10895668 .. 10896957
1290 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG098700.1

Sequence Viewer

Length: 1008 bp
ATGCAAGGCCTCCACCACCAACAGCAGCAACTCGCCGCCCTTCCCAAGGACGACTCCTCTTCCCCCTCTAAACCCGACGACGATGACTCCGCTCGACTCGCCGCCCTCAACTCCCTCCACCGCGCCATTCTCTACCCTCCCAACTCCCTCCTCGTCACTCACTCCGCCACTTTCCTCACCCAGGGCTTCTCTCAGCTTCTCTCCGATAAATGTTATGGGGTGAGGCAAGAGGCTGCGGTGGCATATGGTGCTCTTTGTGCTGTGGTTTGCTCAATTCCTATAACTTCAAATGGAAGACAGAACCATGTTATGCTTGGGAGCTTGGTTGACCGGTTCATTGGTTGGGCGCTGCCGTTGCTTAGTAATATCAGCGCCGGAGATGGGACCACGGAATTGGCATTGGACGGCCTGCGAGAGTTTCTTAACGTTGGGGATGTTGGCGGGATCGAGAGATATGCTTTGTCAATTCTTAAAGCGTGCCAAGTTCTTCTTGAGGATGAGAGAACCTCCTTGAGTCTGTTGCACCGCCTTCTCGGTGTTTTGACTTTGATTTCATTGAAGTTTTCTAGATACTTCCAACCTCATTTTCTTGACATTGTTGATCTGCTTCTCTGGTGGGCGTTGGTACCGGACCTTGCCGAATCAGATAGAAGAATTATAATGGATAGTTTCTTACAGTTTCATAATCATTGGGTGGGTAGTTTGCAGTTTTCTCTGGGATTGCTGTCGAAGTTTGTAGGAGACATGGATGTTTTGATTCAGGATGTAAGTCATGGAACCCCACAACAATTCCAAAGGCTGCTCACGTTACTTTCATGTTTTCAACAGTATTGCAGTCCACTGCTTCTGGGTTGCTGGAAAAGAATCTACTTGAACAAATTACTGAACCCCTTAACAGAATTATTCCTCGGTTGTTGGGATGTTTATCTATGGTTGGAAGGAGATTTGGGTGGAAGGGATTGGGGATTCATGGAAGTGTCTGACTTTGCTGGCAGAAATTTTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006401 GO:0006402 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019219 GO:0019222 GO:0019439 GO:0019538 GO:0019637 GO:0030258 GO:0031323 GO:0031974 GO:0031981 GO:0032204 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034655 GO:0036211 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046486 GO:0046488 GO:0046700 GO:0046777 GO:0046834 GO:0046854 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140096 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901575 GO:2001020
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
FATC PI3_PI4_kinase SMG1 WD40

Protein Analysis

335

Amino Acids

37.45

Weight (kDa)

5.39

Isoelectric Point (pI)

34.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 659
Acc65I GGTACC 1 cut(s) 625
AccB1I GGYRCC 1 cut(s) 625
AccBSI CCGCTC 1 cut(s) 92
AccII CGCG 1 cut(s) 123
AciI CCGC 8 cut(s) 36, 90, 102, 121, 165, 236, 441, 526
AclI AACGTT 1 cut(s) 426
AclWI GGATC 1 cut(s) 452
AcsI RAATTY 1 cut(s) 997
AfaI GTAC 1 cut(s) 627
AfiI CCNNNNNNNGG 3 cut(s) 46, 181, 381
AgeI ACCGGT 1 cut(s) 330
AgsI TTSAA 4 cut(s) 288, 559, 824, 874
AjnI CCWGG 1 cut(s) 180
AjuI GAANNNNNNNTTGG 2 cut(s) 570, 602
AluBI AGCT 2 cut(s) 196, 321
AluI AGCT 2 cut(s) 196, 321
Alw21I GWGCWC 1 cut(s) 253
Alw26I GTCTC 1 cut(s) 735
AlwI GGATC 1 cut(s) 452
AoxI GGCC 2 cut(s) 7, 406
ApeKI GCWGC 4 cut(s) 25, 233, 349, 799
ApoI RAATTY 1 cut(s) 997
AsiGI ACCGGT 1 cut(s) 330
Asp718I GGTACC 1 cut(s) 625
AspLEI GCGC 3 cut(s) 125, 349, 374
AspS9I GGNCC 2 cut(s) 384, 631
AsuHPI GGTGA 2 cut(s) 169, 232
AvaII GGWCC 2 cut(s) 384, 631
BanI GGYRCC 1 cut(s) 625
BbsI GAAGAC 1 cut(s) 301
Bbv12I GWGCWC 1 cut(s) 253
BbvI GCAGC 4 cut(s) 37, 220, 336, 786
BccI CCATC 1 cut(s) 374
BceAI ACGGC 2 cut(s) 337, 421
BcgI CGANNNNNNTGC 2 cut(s) 437, 471
BciT130I CCWGG 1 cut(s) 182
BcoDI GTCTC 1 cut(s) 735
BfaI CTAG 1 cut(s) 567
BfoI RGCGCY 2 cut(s) 350, 375
BisI GCNGC 6 cut(s) 26, 36, 102, 234, 350, 800
BlsI GCNGC 6 cut(s) 27, 37, 103, 235, 351, 801
Bme1390I CCNGG 1 cut(s) 182
Bme18I GGWCC 2 cut(s) 384, 631
BmgT120I GGNCC 2 cut(s) 384, 631
BmiI GGNNCC 3 cut(s) 385, 627, 778
BmrFI CCNGG 1 cut(s) 182
BpiI GAAGAC 1 cut(s) 301
BplI GAGNNNNNCTC 2 cut(s) 491, 523
BpuEI CTTGAG 2 cut(s) 512, 532
BsaBI GATNNNNATC 1 cut(s) 924
BsaJI CCNNGG 5 cut(s) 45, 180, 181, 387, 907
BsaWI WCCGGW 2 cut(s) 330, 628
BsaXI ACNNNNNCTCC 2 cut(s) 71, 101
Bsc4I CCNNNNNNNGG 3 cut(s) 46, 181, 381
Bse118I RCCGGY 1 cut(s) 330
Bse8I GATNNNNATC 1 cut(s) 924
BseBI CCWGG 1 cut(s) 182
BseDI CCNNGG 5 cut(s) 45, 180, 181, 387, 907
BseGI GGATG 5 cut(s) 439, 502, 754, 769, 925
BseJI GATNNNNATC 1 cut(s) 924
BseLI CCNNNNNNNGG 3 cut(s) 46, 181, 381
BseMII CTCAG 1 cut(s) 206
BseRI GAGGAG 2 cut(s) 46, 140
BseXI GCAGC 4 cut(s) 37, 220, 336, 786
Bsh1236I CGCG 1 cut(s) 123
BshFI GGCC 2 cut(s) 9, 408
BshNI GGYRCC 1 cut(s) 625
BshTI ACCGGT 1 cut(s) 330
BsiHKAI GWGCWC 1 cut(s) 253
BsiSI CCGG 3 cut(s) 331, 375, 629
BslFI GGGAC 1 cut(s) 397
BslI CCNNNNNNNGG 3 cut(s) 46, 181, 381
BsmAI GTCTC 1 cut(s) 735
BsmFI GGGAC 1 cut(s) 397
BsnI GGCC 2 cut(s) 9, 408
Bsp1286I GDGCHC 1 cut(s) 253
Bsp143I GATC 2 cut(s) 444, 601
BspACI CCGC 8 cut(s) 36, 90, 102, 121, 165, 236, 441, 526
BspANI GGCC 2 cut(s) 9, 408
BspCNI CTCAG 1 cut(s) 205
BspFNI CGCG 1 cut(s) 123
BspLI GGNNCC 3 cut(s) 385, 627, 778
BspPI GGATC 1 cut(s) 452
BspT107I GGYRCC 1 cut(s) 625
BsrBI CCGCTC 1 cut(s) 92
BsrFI RCCGGY 1 cut(s) 330
BssAI RCCGGY 1 cut(s) 330
BssECI CCNNGG 5 cut(s) 45, 180, 181, 387, 907
BssMI GATC 2 cut(s) 444, 601
BssT1I CCWWGG 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 182
Bst4CI ACNGT 2 cut(s) 678, 828
Bst6I CTCTTC 1 cut(s) 64
BstAPI GCANNNNNTGC 1 cut(s) 248
BstC8I GCNNGC 3 cut(s) 410, 478, 991
BstDEI CTNAG 2 cut(s) 192, 359
BstDSI CCRYGG 1 cut(s) 387
BstENI CCTNNNNNAGG 2 cut(s) 44, 179
BstF5I GGATG 5 cut(s) 439, 502, 754, 769, 925
BstFNI CGCG 1 cut(s) 123
BstH2I RGCGCY 2 cut(s) 350, 375
BstHHI GCGC 3 cut(s) 125, 349, 374
BstKTI GATC 2 cut(s) 447, 604
BstMAI GTCTC 1 cut(s) 735
BstMBI GATC 2 cut(s) 444, 601
BstMWI GCNNNNNNNGC 5 cut(s) 98, 239, 248, 257, 355
BstNI CCWGG 1 cut(s) 182
BstSCI CCNGG 1 cut(s) 180
BstUI CGCG 1 cut(s) 123
BstV1I GCAGC 4 cut(s) 37, 220, 336, 786
BstV2I GAAGAC 1 cut(s) 301
BstXI CCANNNNNNTGG 1 cut(s) 394
BsuRI GGCC 2 cut(s) 9, 408
BtgI CCRYGG 1 cut(s) 387
BtsCI GGATG 5 cut(s) 439, 502, 754, 769, 925
BtsI GCAGTG 1 cut(s) 839
BtsIMutI CAGTG 1 cut(s) 839
Cac8I GCNNGC 3 cut(s) 410, 478, 991
CfoI GCGC 3 cut(s) 125, 349, 374
Cfr10I RCCGGY 1 cut(s) 330
Cfr13I GGNCC 2 cut(s) 384, 631
Csp6I GTAC 1 cut(s) 626
CspAI ACCGGT 1 cut(s) 330
CviAII CATG 5 cut(s) 305, 745, 773, 816, 970
CviJI RGCY 7 cut(s) 9, 186, 196, 233, 321, 408, 799
CviKI_1 RGCY 7 cut(s) 9, 186, 196, 233, 321, 408, 799
CviQI GTAC 1 cut(s) 626
DdeI CTNAG 2 cut(s) 192, 359
DpnI GATC 2 cut(s) 446, 603
DpnII GATC 2 cut(s) 444, 601
Eam1104I CTCTTC 1 cut(s) 64
EarI CTCTTC 1 cut(s) 64
EciI GGCGGA 1 cut(s) 154
Eco130I CCWWGG 1 cut(s) 45
Eco147I AGGCCT 1 cut(s) 9
Eco47I GGWCC 2 cut(s) 384, 631
EcoNI CCTNNNNNAGG 2 cut(s) 44, 179
EcoRII CCWGG 1 cut(s) 180
EcoT14I CCWWGG 1 cut(s) 45
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 5 cut(s) 308, 748, 776, 819, 973
FalI AAGNNNNNCTT 2 cut(s) 474, 506
FaqI GGGAC 1 cut(s) 397
FatI CATG 5 cut(s) 304, 744, 772, 815, 969
FauI CCCGC 1 cut(s) 434
FauNDI CATATG 1 cut(s) 244
Fnu4HI GCNGC 6 cut(s) 26, 36, 102, 234, 350, 800
FokI GGATG 5 cut(s) 446, 509, 761, 776, 932
Fsp4HI GCNGC 6 cut(s) 26, 36, 102, 234, 350, 800
FspBI CTAG 1 cut(s) 567
GlaI GCGC 3 cut(s) 124, 348, 373
GluI GCNGC 6 cut(s) 26, 36, 102, 234, 350, 800
HaeII RGCGCY 2 cut(s) 350, 375
HaeIII GGCC 2 cut(s) 9, 408
HapII CCGG 3 cut(s) 331, 375, 629
HhaI GCGC 3 cut(s) 125, 349, 374
Hin1II CATG 5 cut(s) 308, 748, 776, 819, 973
Hin6I GCGC 3 cut(s) 123, 347, 372
HinP1I GCGC 3 cut(s) 123, 347, 372
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HinfI GANTC 8 cut(s) 53, 86, 96, 514, 641, 757, 864, 966
HpaII CCGG 3 cut(s) 331, 375, 629
HphI GGTGA 2 cut(s) 169, 232
Hpy166II GTNNAC 2 cut(s) 328, 839
Hpy188I TCNGA 3 cut(s) 205, 646, 982
Hpy188III TCNNGA 5 cut(s) 448, 491, 567, 590, 761
Hpy8I GTNNAC 2 cut(s) 328, 839
Hpy99I CGWCG 2 cut(s) 80, 83
HpyAV CCTTC 4 cut(s) 50, 539, 932, 948
HpyCH4III ACNGT 2 cut(s) 678, 828
HpyCH4IV ACGT 2 cut(s) 426, 806
HpyCH4V TGCA 4 cut(s) 4, 523, 706, 834
HpyF10VI GCNNNNNNNGC 5 cut(s) 98, 239, 248, 257, 355
HpyF3I CTNAG 2 cut(s) 192, 359
HpySE526I ACGT 2 cut(s) 426, 806
Hsp92II CATG 5 cut(s) 308, 748, 776, 819, 973
HspAI GCGC 3 cut(s) 123, 347, 372
KpnI GGTACC 1 cut(s) 629
Kzo9I GATC 2 cut(s) 444, 601
LmnI GCTCC 1 cut(s) 318
Lsp1109I GCAGC 4 cut(s) 37, 220, 336, 786
MaeI CTAG 1 cut(s) 567
MaeII ACGT 2 cut(s) 426, 806
MaeIII GTNAC 2 cut(s) 154, 807
MalI GATC 2 cut(s) 446, 603
MbiI CCGCTC 1 cut(s) 92
MboI GATC 2 cut(s) 444, 601
MboII GAAGA 4 cut(s) 51, 306, 479, 663
MhlI GDGCHC 1 cut(s) 253
MluCI AATT 8 cut(s) 273, 392, 465, 654, 788, 878, 899, 997
MlyI GAGTC 4 cut(s) 47, 80, 90, 523
MmeI TCCRAC 2 cut(s) 601, 915
MseI TTAA 3 cut(s) 423, 471, 893
MslI CAYNNNNRTG 1 cut(s) 974
MspI CCGG 3 cut(s) 331, 375, 629
MspR9I CCNGG 1 cut(s) 182
MvaI CCWGG 1 cut(s) 182
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 5 cut(s) 98, 239, 248, 257, 355
NdeI CATATG 1 cut(s) 244
NdeII GATC 2 cut(s) 444, 601
NlaIII CATG 5 cut(s) 308, 748, 776, 819, 973
NlaIV GGNNCC 3 cut(s) 385, 627, 778
NmuCI GTSAC 1 cut(s) 154
PasI CCCWGGG 1 cut(s) 181
PceI AGGCCT 1 cut(s) 9
PfeI GAWTC 4 cut(s) 641, 757, 864, 966
PinAI ACCGGT 1 cut(s) 330
PkrI GCNGC 6 cut(s) 27, 37, 103, 235, 351, 801
PleI GAGTC 4 cut(s) 47, 80, 90, 522
PpsI GAGTC 4 cut(s) 47, 80, 90, 522
PsiI TTATAA 1 cut(s) 659
Psp1406I AACGTT 1 cut(s) 426
Psp6I CCWGG 1 cut(s) 180
PspGI CCWGG 1 cut(s) 180
PspN4I GGNNCC 3 cut(s) 385, 627, 778
PspPI GGNCC 2 cut(s) 384, 631
RsaI GTAC 1 cut(s) 627
RsaNI GTAC 1 cut(s) 626
RseI CAYNNNNRTG 1 cut(s) 974
SaqAI TTAA 3 cut(s) 423, 471, 893
SatI GCNGC 6 cut(s) 26, 36, 102, 234, 350, 800
Sau3AI GATC 2 cut(s) 444, 601
Sau96I GGNCC 2 cut(s) 384, 631
SchI GAGTC 4 cut(s) 47, 80, 90, 523
ScrFI CCNGG 1 cut(s) 182
SduI GDGCHC 1 cut(s) 253
SetI ASST 7 cut(s) 198, 323, 429, 509, 583, 636, 809
SinI GGWCC 2 cut(s) 384, 631
SmiMI CAYNNNNRTG 1 cut(s) 974
SmlI CTYRAG 2 cut(s) 491, 511
SmoI CTYRAG 2 cut(s) 491, 511
Sse9I AATT 8 cut(s) 273, 392, 465, 654, 788, 878, 899, 997
SseBI AGGCCT 1 cut(s) 9
SsiI CCGC 8 cut(s) 36, 90, 102, 121, 165, 236, 441, 526
SspMI CTAG 1 cut(s) 567
StuI AGGCCT 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 180
StyI CCWWGG 1 cut(s) 45
TaaI ACNGT 2 cut(s) 678, 828
TaiI ACGT 2 cut(s) 429, 809
TaqI TCGA 3 cut(s) 94, 447, 728
TasI AATT 8 cut(s) 273, 392, 465, 654, 788, 878, 899, 997
TauI GCSGC 2 cut(s) 38, 104
TfiI GAWTC 4 cut(s) 641, 757, 864, 966
Tru1I TTAA 3 cut(s) 423, 471, 893
Tru9I TTAA 3 cut(s) 423, 471, 893
TscAI CASTG 1 cut(s) 846
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 4 cut(s) 25, 233, 349, 799
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 5 cut(s) 325, 543, 671, 804, 958
TspGWI ACGGA 1 cut(s) 404
TspRI CASTG 1 cut(s) 846
VpaK11BI GGWCC 2 cut(s) 384, 631
XagI CCTNNNNNAGG 2 cut(s) 44, 179
XapI RAATTY 1 cut(s) 997
XbaI TCTAGA 1 cut(s) 566
XcmI CCANNNNNNNNNTGG 1 cut(s) 311
XspI CTAG 1 cut(s) 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.