Rmu_sc0036891.1_g000002

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0036891.1
OG0001771
Physical Location & Seq
Forward (+)
744 .. 1576
833 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0036891.1_g000002.1.cds

Sequence Viewer

Length: 522 bp
atgcaaggcctccaccaccaacagcagcaactagctgctcttctctccgtcgctcttcccaaggacgattcctcttccccttctaaacccgacgacgatgactccgctcgactcgccgccctcaactccctccaccgcgccattctctaccctcccaactccctcctcgtcactcactccgcctctttcctcgcccagggcttctctcagcttctctccgacaaatgttatggggtgaggcaagaggctgcggtggcatatggtgctctttgtgctgtggtttgttcagttcctataacttcaaatggaagacagaaccatgttatgcttgggagcttggttgaccgcttcattggttgggcgctgccgttgcttagcaatatcagtgccggagatgggaccgcggaattggcattggacggcctgcgagagtttcttaatgttggggatgttggcgggatcgagagatatgctttgtcaattcttaaagcgtgccaagttcttcttgaggatgagagaacc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006401 GO:0006402 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019219 GO:0019222 GO:0019439 GO:0019538 GO:0019637 GO:0030258 GO:0031323 GO:0031974 GO:0031981 GO:0032204 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034655 GO:0036211 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046486 GO:0046488 GO:0046700 GO:0046777 GO:0046834 GO:0046854 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140096 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901575 GO:2001020
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
FATC PI3_PI4_kinase SMG1 WD40

Protein Analysis

174

Amino Acids

18.54

Weight (kDa)

5.2

Isoelectric Point (pI)

35.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 107
AccII CGCG 2 cut(s) 138, 404
AciI CCGC 9 cut(s) 105, 117, 136, 180, 251, 346, 402, 404, 456
AclWI GGATC 1 cut(s) 467
AfiI CCNNNNNNNGG 2 cut(s) 196, 396
AgsI TTSAA 1 cut(s) 303
AjnI CCWGG 1 cut(s) 195
AluBI AGCT 3 cut(s) 35, 211, 336
AluI AGCT 3 cut(s) 35, 211, 336
Alw21I GWGCWC 1 cut(s) 268
AlwI GGATC 1 cut(s) 467
AoxI GGCC 2 cut(s) 7, 421
ApeKI GCWGC 4 cut(s) 25, 35, 248, 364
AspLEI GCGC 2 cut(s) 140, 364
AspS9I GGNCC 1 cut(s) 399
AsuHPI GGTGA 1 cut(s) 247
AvaII GGWCC 1 cut(s) 399
BbsI GAAGAC 1 cut(s) 316
Bbv12I GWGCWC 1 cut(s) 268
BbvI GCAGC 4 cut(s) 22, 37, 235, 351
BccI CCATC 1 cut(s) 389
BceAI ACGGC 2 cut(s) 352, 436
BcgI CGANNNNNNTGC 2 cut(s) 452, 486
BciT130I CCWGG 1 cut(s) 197
BfaI CTAG 1 cut(s) 32
BfoI RGCGCY 1 cut(s) 365
BisI GCNGC 5 cut(s) 26, 36, 117, 249, 365
BlpI GCTNAGC 1 cut(s) 374
BlsI GCNGC 5 cut(s) 27, 37, 118, 250, 366
Bme1390I CCNGG 1 cut(s) 197
Bme18I GGWCC 1 cut(s) 399
BmgT120I GGNCC 1 cut(s) 399
BmiI GGNNCC 1 cut(s) 400
BmrFI CCNGG 1 cut(s) 197
BpiI GAAGAC 1 cut(s) 316
Bpu1102I GCTNAGC 1 cut(s) 374
BsaJI CCNNGG 4 cut(s) 60, 195, 196, 402
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bsc4I CCNNNNNNNGG 2 cut(s) 196, 396
BseBI CCWGG 1 cut(s) 197
BseDI CCNNGG 4 cut(s) 60, 195, 196, 402
BseGI GGATG 2 cut(s) 454, 517
BseLI CCNNNNNNNGG 2 cut(s) 196, 396
BseMII CTCAG 1 cut(s) 221
BseRI GAGGAG 1 cut(s) 155
BseXI GCAGC 4 cut(s) 22, 37, 235, 351
Bsh1236I CGCG 2 cut(s) 138, 404
BshFI GGCC 2 cut(s) 9, 423
BsiHKAI GWGCWC 1 cut(s) 268
BsiSI CCGG 1 cut(s) 390
BslFI GGGAC 1 cut(s) 412
BslI CCNNNNNNNGG 2 cut(s) 196, 396
BsmFI GGGAC 1 cut(s) 412
BsnI GGCC 2 cut(s) 9, 423
Bsp1286I GDGCHC 1 cut(s) 268
Bsp143I GATC 1 cut(s) 459
Bsp1720I GCTNAGC 1 cut(s) 374
BspACI CCGC 9 cut(s) 105, 117, 136, 180, 251, 346, 402, 404, 456
BspANI GGCC 2 cut(s) 9, 423
BspCNI CTCAG 1 cut(s) 220
BspFNI CGCG 2 cut(s) 138, 404
BspLI GGNNCC 1 cut(s) 400
BspPI GGATC 1 cut(s) 467
BspQI GCTCTTC 2 cut(s) 45, 60
BsrBI CCGCTC 1 cut(s) 107
BssECI CCNNGG 4 cut(s) 60, 195, 196, 402
BssMI GATC 1 cut(s) 459
BssT1I CCWWGG 1 cut(s) 60
Bst2UI CCWGG 1 cut(s) 197
Bst6I CTCTTC 3 cut(s) 45, 60, 79
BstAPI GCANNNNNTGC 1 cut(s) 263
BstC8I GCNNGC 2 cut(s) 425, 493
BstDEI CTNAG 2 cut(s) 207, 374
BstDSI CCRYGG 1 cut(s) 402
BstENI CCTNNNNNAGG 1 cut(s) 194
BstF5I GGATG 2 cut(s) 454, 517
BstFNI CGCG 2 cut(s) 138, 404
BstH2I RGCGCY 1 cut(s) 365
BstHHI GCGC 2 cut(s) 140, 364
BstKTI GATC 1 cut(s) 462
BstMBI GATC 1 cut(s) 459
BstMWI GCNNNNNNNGC 6 cut(s) 113, 254, 263, 272, 370, 410
BstNI CCWGG 1 cut(s) 197
BstSCI CCNGG 1 cut(s) 195
BstUI CGCG 2 cut(s) 138, 404
BstV1I GCAGC 4 cut(s) 22, 37, 235, 351
BstV2I GAAGAC 1 cut(s) 316
BsuRI GGCC 2 cut(s) 9, 423
BtgI CCRYGG 1 cut(s) 402
BtsCI GGATG 2 cut(s) 454, 517
BtsIMutI CAGTG 1 cut(s) 391
Cac8I GCNNGC 2 cut(s) 425, 493
CfoI GCGC 2 cut(s) 140, 364
Cfr13I GGNCC 1 cut(s) 399
Cfr42I CCGCGG 1 cut(s) 405
CviAII CATG 1 cut(s) 320
CviJI RGCY 7 cut(s) 9, 35, 201, 211, 248, 336, 423
CviKI_1 RGCY 7 cut(s) 9, 35, 201, 211, 248, 336, 423
DdeI CTNAG 2 cut(s) 207, 374
DpnI GATC 1 cut(s) 461
DpnII GATC 1 cut(s) 459
Eam1104I CTCTTC 3 cut(s) 45, 60, 79
EarI CTCTTC 3 cut(s) 45, 60, 79
EciI GGCGGA 1 cut(s) 169
Eco130I CCWWGG 1 cut(s) 60
Eco147I AGGCCT 1 cut(s) 9
Eco47I GGWCC 1 cut(s) 399
EcoNI CCTNNNNNAGG 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 195
EcoT14I CCWWGG 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 60
FaeI CATG 1 cut(s) 323
FaiI YATR 7 cut(s) 231, 259, 261, 296, 321, 326, 471
FalI AAGNNNNNCTT 2 cut(s) 489, 521
FaqI GGGAC 1 cut(s) 412
FatI CATG 1 cut(s) 319
FauI CCCGC 1 cut(s) 449
FauNDI CATATG 1 cut(s) 259
Fnu4HI GCNGC 5 cut(s) 26, 36, 117, 249, 365
FokI GGATG 1 cut(s) 461
Fsp4HI GCNGC 5 cut(s) 26, 36, 117, 249, 365
FspBI CTAG 1 cut(s) 32
GlaI GCGC 2 cut(s) 139, 363
GluI GCNGC 5 cut(s) 26, 36, 117, 249, 365
HaeII RGCGCY 1 cut(s) 365
HaeIII GGCC 2 cut(s) 9, 423
HapII CCGG 1 cut(s) 390
HhaI GCGC 2 cut(s) 140, 364
Hin1II CATG 1 cut(s) 323
Hin6I GCGC 2 cut(s) 138, 362
HinP1I GCGC 2 cut(s) 138, 362
HincII GTYRAC 1 cut(s) 343
HindII GTYRAC 1 cut(s) 343
HinfI GANTC 3 cut(s) 68, 101, 111
HpaII CCGG 1 cut(s) 390
HphI GGTGA 1 cut(s) 247
Hpy166II GTNNAC 1 cut(s) 343
Hpy188I TCNGA 1 cut(s) 220
Hpy188III TCNNGA 2 cut(s) 463, 506
Hpy8I GTNNAC 1 cut(s) 343
Hpy99I CGWCG 3 cut(s) 53, 95, 98
HpyAV CCTTC 1 cut(s) 90
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 6 cut(s) 113, 254, 263, 272, 370, 410
HpyF3I CTNAG 2 cut(s) 207, 374
Hsp92II CATG 1 cut(s) 323
HspAI GCGC 2 cut(s) 138, 362
KspI CCGCGG 1 cut(s) 405
Kzo9I GATC 1 cut(s) 459
LguI GCTCTTC 2 cut(s) 45, 60
LmnI GCTCC 1 cut(s) 333
LpnPI CCDG 4 cut(s) 182, 209, 403, 437
Lsp1109I GCAGC 4 cut(s) 22, 37, 235, 351
MaeI CTAG 1 cut(s) 32
MaeIII GTNAC 1 cut(s) 169
MalI GATC 1 cut(s) 461
MbiI CCGCTC 1 cut(s) 107
MboI GATC 1 cut(s) 459
MboII GAAGA 5 cut(s) 32, 47, 66, 321, 494
MhlI GDGCHC 1 cut(s) 268
MluCI AATT 2 cut(s) 407, 480
MlyI GAGTC 2 cut(s) 95, 105
MmeI TCCRAC 1 cut(s) 243
MseI TTAA 2 cut(s) 438, 486
MspA1I CMGCKG 1 cut(s) 404
MspI CCGG 1 cut(s) 390
MspR9I CCNGG 1 cut(s) 197
MvaI CCWGG 1 cut(s) 197
MvnI CGCG 2 cut(s) 138, 404
MwoI GCNNNNNNNGC 6 cut(s) 113, 254, 263, 272, 370, 410
NdeI CATATG 1 cut(s) 259
NdeII GATC 1 cut(s) 459
NlaIII CATG 1 cut(s) 323
NlaIV GGNNCC 1 cut(s) 400
NmuCI GTSAC 1 cut(s) 169
PasI CCCWGGG 1 cut(s) 196
PceI AGGCCT 1 cut(s) 9
PciSI GCTCTTC 2 cut(s) 45, 60
PfeI GAWTC 1 cut(s) 68
PkrI GCNGC 5 cut(s) 27, 37, 118, 250, 366
PleI GAGTC 2 cut(s) 95, 105
PpsI GAGTC 2 cut(s) 95, 105
Psp6I CCWGG 1 cut(s) 195
PspGI CCWGG 1 cut(s) 195
PspN4I GGNNCC 1 cut(s) 400
PspPI GGNCC 1 cut(s) 399
SacII CCGCGG 1 cut(s) 405
SapI GCTCTTC 2 cut(s) 45, 60
SaqAI TTAA 2 cut(s) 438, 486
SatI GCNGC 5 cut(s) 26, 36, 117, 249, 365
Sau3AI GATC 1 cut(s) 459
Sau96I GGNCC 1 cut(s) 399
SchI GAGTC 2 cut(s) 95, 105
ScrFI CCNGG 1 cut(s) 197
SduI GDGCHC 1 cut(s) 268
SetI ASST 3 cut(s) 37, 213, 338
Sfr303I CCGCGG 1 cut(s) 405
SgrBI CCGCGG 1 cut(s) 405
SinI GGWCC 1 cut(s) 399
SmlI CTYRAG 1 cut(s) 506
SmoI CTYRAG 1 cut(s) 506
Sse9I AATT 2 cut(s) 407, 480
SseBI AGGCCT 1 cut(s) 9
SsiI CCGC 9 cut(s) 105, 117, 136, 180, 251, 346, 402, 404, 456
SspMI CTAG 1 cut(s) 32
StuI AGGCCT 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 195
StyI CCWWGG 1 cut(s) 60
TaqI TCGA 2 cut(s) 109, 462
TasI AATT 2 cut(s) 407, 480
TauI GCSGC 1 cut(s) 119
TfiI GAWTC 1 cut(s) 68
Tru1I TTAA 2 cut(s) 438, 486
Tru9I TTAA 2 cut(s) 438, 486
TscAI CASTG 1 cut(s) 391
TseFI GTSAC 1 cut(s) 169
TseI GCWGC 4 cut(s) 25, 35, 248, 364
Tsp45I GTSAC 1 cut(s) 169
TspDTI ATGAA 1 cut(s) 340
TspGWI ACGGA 1 cut(s) 37
TspRI CASTG 1 cut(s) 391
VpaK11BI GGWCC 1 cut(s) 399
XagI CCTNNNNNAGG 1 cut(s) 194
XcmI CCANNNNNNNNNTGG 1 cut(s) 326
XspI CTAG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.