Rroxscaffold_7G00207340

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001771
Physical Location & Seq
Forward (+)
57223552 .. 57225270
1719 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00207340.1

Sequence Viewer

Length: 942 bp
ATGGATGTTACCTCTGATAAATTACTTAATAGTGAGACTTTGACGAATGAACATTTGGTTGTGGTTGTTGAGAATCTGAGAAAGTACAGTCTGTCTTTTGTGAAAGCTCTCCATGTCTCTTCTCCTTTTGCAGTTAAAGTAACTGCGCTGGATTGGGTACAAAGATTTTGTGAGAATGTTATTGCTTTTAATGAGAAATCAGACACAAAATCTCGTTTCTATGAAGTGTATGGACAGTATGGTAATGATAGAATTATTGGGAACATGCTTTACTCAATTATGGATGCTGCATCTGATAGGGAACCAAAAATCTACATGATGTTCAGTCTAGGAAAGGAGGCTGCTGCAGTTCATCGTTCTCTTGTGGAAGACCTTTCAAAGGCAAATGCAATTCTTCTTCCACTGGAAACAGTATTGTCCAAAGATGTAGCTGCTATGACTGATGCTATGTGTAGGGAAAGAGTGACCAATATGGAAATATCTCCGATTCATGGACAAGCCATATACCAGTCTTATTCTTTAAAAATCAGGGAGGCTTGCCAGACCTTACATCCCTTGGTGTCCTCACTTACCTCATCTGTGAAGGGGCTCTATTCTATGTTGACCAGGCTTGCACGAACTGCAAGTCTTCATGCTGGGGATCTTCATAAAGCTCTTGAAGGACTAGGAGAAAGCCAGGAAGTAAAATCGCCAGTAACTGATGTATCAAGGCCAGATCTTGCTACTGATGCTGCTGGGTTTGATGACAAGGAGAGAGAGAACCTCTCCATGTCAAATGGTGAGAGCATCAAAGATTTTGTTGGCATTGGACTTCCTTTGGAAGATAAAGGATGGTTATCTCCACCAGATAGTATCTGCAGTAGTAGTACAGATTCTGGCATTTCCTTTCCTGAAATGAGTCTTCCAGTTAGCTTCGATGATCAAGAAGATATAAAGCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006401 GO:0006402 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019219 GO:0019222 GO:0019439 GO:0019538 GO:0019637 GO:0030258 GO:0031323 GO:0031974 GO:0031981 GO:0032204 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034655 GO:0036211 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046486 GO:0046488 GO:0046700 GO:0046777 GO:0046834 GO:0046854 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140096 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901575 GO:2001020
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
FATC PI3_PI4_kinase SMG1 WD40

Protein Analysis

313

Amino Acids

34.54

Weight (kDa)

4.97

Isoelectric Point (pI)

35.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 648
AfaI GTAC 3 cut(s) 86, 159, 868
AfiI CCNNNNNNNGG 2 cut(s) 379, 491
AgsI TTSAA 2 cut(s) 378, 659
AjnI CCWGG 2 cut(s) 605, 675
AjuI GAANNNNNNNTTGG 2 cut(s) 38, 70
AluBI AGCT 4 cut(s) 107, 431, 653, 912
AluI AGCT 4 cut(s) 107, 431, 653, 912
Alw26I GTCTC 2 cut(s) 29, 121
AlwI GGATC 1 cut(s) 648
AlwNI CAGNNNCTG 2 cut(s) 698, 875
AoxI GGCC 1 cut(s) 710
ApeKI GCWGC 5 cut(s) 287, 341, 344, 431, 731
ArsI GACNNNNNNTTYG 2 cut(s) 610, 642
AspLEI GCGC 1 cut(s) 148
AsuHPI GGTGA 1 cut(s) 791
BaeI ACNNNNGTAYC 2 cut(s) 687, 720
BanII GRGCYC 1 cut(s) 591
BbsI GAAGAC 3 cut(s) 375, 620, 893
BbvI GCAGC 5 cut(s) 274, 328, 331, 418, 718
BccI CCATC 1 cut(s) 825
BciT130I CCWGG 2 cut(s) 607, 677
BclI TGATCA 1 cut(s) 919
BcoDI GTCTC 2 cut(s) 29, 121
BfaI CTAG 2 cut(s) 329, 665
BfmI CTRYAG 2 cut(s) 345, 856
BglII AGATCT 1 cut(s) 715
BisI GCNGC 5 cut(s) 288, 342, 345, 432, 732
BlsI GCNGC 5 cut(s) 289, 343, 346, 433, 733
Bme1390I CCNGG 2 cut(s) 607, 677
BmiI GGNNCC 1 cut(s) 303
BmrFI CCNGG 2 cut(s) 607, 677
BmsI GCATC 5 cut(s) 274, 299, 433, 718, 795
BpiI GAAGAC 3 cut(s) 375, 620, 893
BplI GAGNNNNNCTC 4 cut(s) 747, 779, 749, 781
BsaBI GATNNNNATC 1 cut(s) 835
BsaJI CCNNGG 1 cut(s) 555
Bsc4I CCNNNNNNNGG 2 cut(s) 379, 491
Bse1I ACTGG 4 cut(s) 408, 508, 692, 905
Bse8I GATNNNNATC 1 cut(s) 835
BseBI CCWGG 2 cut(s) 607, 677
BseDI CCNNGG 1 cut(s) 555
BseGI GGATG 4 cut(s) 10, 289, 550, 836
BseJI GATNNNNATC 1 cut(s) 835
BseLI CCNNNNNNNGG 2 cut(s) 379, 491
BseMII CTCAG 1 cut(s) 68
BseNI ACTGG 4 cut(s) 408, 508, 692, 905
BseXI GCAGC 5 cut(s) 274, 328, 331, 418, 718
BseYI CCCAGC 2 cut(s) 635, 734
BshFI GGCC 1 cut(s) 712
BslI CCNNNNNNNGG 2 cut(s) 379, 491
BsmAI GTCTC 2 cut(s) 29, 121
BsnI GGCC 1 cut(s) 712
Bsp1286I GDGCHC 1 cut(s) 591
Bsp143I GATC 3 cut(s) 640, 715, 919
BspANI GGCC 1 cut(s) 712
BspCNI CTCAG 1 cut(s) 69
BspLI GGNNCC 1 cut(s) 303
BspMAI CTGCAG 2 cut(s) 349, 860
BspPI GGATC 1 cut(s) 648
BsrI ACTGG 4 cut(s) 408, 508, 692, 905
BssECI CCNNGG 1 cut(s) 555
BssMI GATC 3 cut(s) 640, 715, 919
BssT1I CCWWGG 1 cut(s) 555
Bst2UI CCWGG 2 cut(s) 607, 677
Bst4CI ACNGT 3 cut(s) 89, 237, 412
Bst6I CTCTTC 1 cut(s) 124
BstAPI GCANNNNNTGC 1 cut(s) 620
BstC8I GCNNGC 2 cut(s) 538, 612
BstDEI CTNAG 1 cut(s) 77
BstENI CCTNNNNNAGG 1 cut(s) 377
BstF5I GGATG 4 cut(s) 10, 289, 550, 836
BstHHI GCGC 1 cut(s) 148
BstKTI GATC 3 cut(s) 643, 718, 922
BstMAI GTCTC 2 cut(s) 29, 121
BstMBI GATC 3 cut(s) 640, 715, 919
BstMWI GCNNNNNNNGC 2 cut(s) 620, 728
BstNI CCWGG 2 cut(s) 607, 677
BstNSI RCATGY 1 cut(s) 268
BstSCI CCNGG 2 cut(s) 605, 675
BstSFI CTRYAG 2 cut(s) 345, 856
BstV1I GCAGC 5 cut(s) 274, 328, 331, 418, 718
BstV2I GAAGAC 3 cut(s) 375, 620, 893
BstX2I RGATCY 2 cut(s) 640, 715
BstYI RGATCY 2 cut(s) 640, 715
BsuRI GGCC 1 cut(s) 712
BtsCI GGATG 4 cut(s) 10, 289, 550, 836
BtsIMutI CAGTG 1 cut(s) 401
Cac8I GCNNGC 2 cut(s) 538, 612
CaiI CAGNNNCTG 2 cut(s) 698, 875
CfoI GCGC 1 cut(s) 148
Csp6I GTAC 3 cut(s) 85, 158, 867
CviAII CATG 6 cut(s) 113, 265, 316, 491, 632, 769
CviQI GTAC 3 cut(s) 85, 158, 867
DdeI CTNAG 1 cut(s) 77
DpnI GATC 3 cut(s) 642, 717, 921
DpnII GATC 3 cut(s) 640, 715, 919
DraI TTTAAA 1 cut(s) 522
Eam1104I CTCTTC 1 cut(s) 124
EarI CTCTTC 1 cut(s) 124
Eco130I CCWWGG 1 cut(s) 555
Eco24I GRGCYC 1 cut(s) 591
EcoNI CCTNNNNNAGG 1 cut(s) 377
EcoRII CCWGG 2 cut(s) 605, 675
EcoT14I CCWWGG 1 cut(s) 555
EcoT38I GRGCYC 1 cut(s) 591
ErhI CCWWGG 1 cut(s) 555
FaeI CATG 6 cut(s) 116, 268, 319, 494, 635, 772
FatI CATG 6 cut(s) 112, 264, 315, 490, 631, 768
FbaI TGATCA 1 cut(s) 919
Fnu4HI GCNGC 5 cut(s) 288, 342, 345, 432, 732
FokI GGATG 4 cut(s) 17, 296, 537, 843
FriOI GRGCYC 1 cut(s) 591
Fsp4HI GCNGC 5 cut(s) 288, 342, 345, 432, 732
FspBI CTAG 2 cut(s) 329, 665
GlaI GCGC 1 cut(s) 147
GluI GCNGC 5 cut(s) 288, 342, 345, 432, 732
GsaI CCCAGC 2 cut(s) 639, 738
HaeIII GGCC 1 cut(s) 712
HhaI GCGC 1 cut(s) 148
Hin1II CATG 6 cut(s) 116, 268, 319, 494, 635, 772
Hin6I GCGC 1 cut(s) 146
HinP1I GCGC 1 cut(s) 146
HincII GTYRAC 1 cut(s) 603
HindII GTYRAC 1 cut(s) 603
HinfI GANTC 4 cut(s) 73, 487, 872, 898
HphI GGTGA 1 cut(s) 791
Hpy166II GTNNAC 1 cut(s) 603
Hpy188I TCNGA 5 cut(s) 16, 78, 202, 295, 486
Hpy188III TCNNGA 3 cut(s) 656, 890, 923
Hpy8I GTNNAC 1 cut(s) 603
HpyAV CCTTC 2 cut(s) 577, 653
HpyCH4III ACNGT 3 cut(s) 89, 237, 412
HpyCH4V TGCA 7 cut(s) 131, 290, 347, 389, 614, 623, 858
HpyF10VI GCNNNNNNNGC 2 cut(s) 620, 728
HpyF3I CTNAG 1 cut(s) 77
Hsp92II CATG 6 cut(s) 116, 268, 319, 494, 635, 772
HspAI GCGC 1 cut(s) 146
Ksp22I TGATCA 1 cut(s) 919
Kzo9I GATC 3 cut(s) 640, 715, 919
Lsp1109I GCAGC 5 cut(s) 274, 328, 331, 418, 718
LweI GCATC 5 cut(s) 274, 299, 433, 718, 795
MaeI CTAG 2 cut(s) 329, 665
MaeIII GTNAC 4 cut(s) 7, 139, 463, 694
MalI GATC 3 cut(s) 642, 717, 921
MboI GATC 3 cut(s) 640, 715, 919
MboII GAAGA 9 cut(s) 111, 380, 386, 389, 620, 635, 833, 893, 938
MflI RGATCY 2 cut(s) 640, 715
MhlI GDGCHC 1 cut(s) 591
MluCI AATT 4 cut(s) 20, 252, 276, 390
MlyI GAGTC 1 cut(s) 907
MnlI CCTC 6 cut(s) 22, 331, 526, 574, 583, 773
MseI TTAA 4 cut(s) 27, 135, 189, 521
MspR9I CCNGG 2 cut(s) 607, 677
MvaI CCWGG 2 cut(s) 607, 677
MwoI GCNNNNNNNGC 2 cut(s) 620, 728
NdeII GATC 3 cut(s) 640, 715, 919
NlaIII CATG 6 cut(s) 116, 268, 319, 494, 635, 772
NlaIV GGNNCC 1 cut(s) 303
NmuCI GTSAC 1 cut(s) 463
NspI RCATGY 1 cut(s) 268
PfeI GAWTC 3 cut(s) 73, 487, 872
PkrI GCNGC 5 cut(s) 289, 343, 346, 433, 733
PleI GAGTC 1 cut(s) 906
PpsI GAGTC 1 cut(s) 906
Psp6I CCWGG 2 cut(s) 605, 675
PspFI CCCAGC 2 cut(s) 635, 734
PspGI CCWGG 2 cut(s) 605, 675
PspN4I GGNNCC 1 cut(s) 303
PsrI GAACNNNNNNTAC 2 cut(s) 254, 286
PstI CTGCAG 2 cut(s) 349, 860
PstNI CAGNNNCTG 2 cut(s) 698, 875
PsuI RGATCY 2 cut(s) 640, 715
RsaI GTAC 3 cut(s) 86, 159, 868
RsaNI GTAC 3 cut(s) 85, 158, 867
SaqAI TTAA 4 cut(s) 27, 135, 189, 521
SatI GCNGC 5 cut(s) 288, 342, 345, 432, 732
Sau3AI GATC 3 cut(s) 640, 715, 919
SchI GAGTC 1 cut(s) 907
ScrFI CCNGG 2 cut(s) 607, 677
SduI GDGCHC 1 cut(s) 591
SetI ASST 9 cut(s) 14, 109, 375, 433, 548, 575, 655, 765, 914
SfaNI GCATC 5 cut(s) 274, 299, 433, 718, 795
SfcI CTRYAG 2 cut(s) 345, 856
Sse9I AATT 4 cut(s) 20, 252, 276, 390
SspMI CTAG 2 cut(s) 329, 665
StyD4I CCNGG 2 cut(s) 605, 675
StyI CCWWGG 1 cut(s) 555
TaaI ACNGT 3 cut(s) 89, 237, 412
TaqI TCGA 1 cut(s) 915
TasI AATT 4 cut(s) 20, 252, 276, 390
TatI WGTACW 2 cut(s) 84, 866
TfiI GAWTC 3 cut(s) 73, 487, 872
Tru1I TTAA 4 cut(s) 27, 135, 189, 521
Tru9I TTAA 4 cut(s) 27, 135, 189, 521
TscAI CASTG 1 cut(s) 408
TseFI GTSAC 1 cut(s) 463
TseI GCWGC 5 cut(s) 287, 341, 344, 431, 731
Tsp45I GTSAC 1 cut(s) 463
TspDTI ATGAA 6 cut(s) 63, 237, 341, 479, 620, 635
TspRI CASTG 1 cut(s) 408
XagI CCTNNNNNAGG 1 cut(s) 377
XceI RCATGY 1 cut(s) 268
XspI CTAG 2 cut(s) 329, 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.