RchiOBHm_Chr6g0260711

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001771
Physical Location & Seq
Forward (+)
15674371 .. 15675599
1229 bp
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UTR
Exon/CDS
Intron
PRQ23381

Sequence Viewer

Length: 309 bp
ATGTTGGATTCTCCGCACATATCAAAATTTACAGACGCAGATAACACTCATGTTGGTTCTTTCAAGTTAGCACCTAGTGACCTAAATGAATGTCAACTGGCTCCAGCATCACCAAGTGATGACCCTGTCAGTGTCCGTCCTGATACTTCACGTCCTTCAAATGAGAACAGAGAGGTGGTGTTTGGGGGTAAAGATGAAAGATCCTCACTGAACAAGGTTATAATTAAGGATGAAACTTGTGATGCTACACATGCTTCTAGTCGAGTTGGCAGGGGTAAAAACCCTTATGCAATGTCAGTCTTGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006401 GO:0006402 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019219 GO:0019222 GO:0019439 GO:0019538 GO:0019637 GO:0030258 GO:0031323 GO:0031974 GO:0031981 GO:0032204 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034655 GO:0036211 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046486 GO:0046488 GO:0046700 GO:0046777 GO:0046834 GO:0046854 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140096 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901575 GO:2001020
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
FATC PI3_PI4_kinase SMG1 WD40

Protein Analysis

102

Amino Acids

11.07

Weight (kDa)

5.85

Isoelectric Point (pI)

58.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 221
AciI CCGC 1 cut(s) 14
AclWI GGATC 1 cut(s) 195
AcsI RAATTY 1 cut(s) 26
AdeI CACNNNGTG 2 cut(s) 77, 116
AgsI TTSAA 2 cut(s) 64, 159
AjiI CACGTC 1 cut(s) 152
AlwI GGATC 1 cut(s) 195
ApoI RAATTY 1 cut(s) 26
AsuHPI GGTGA 1 cut(s) 102
BfaI CTAG 2 cut(s) 75, 258
BmgBI CACGTC 1 cut(s) 152
BmiI GGNNCC 1 cut(s) 102
BmsI GCATC 2 cut(s) 116, 232
BpmI CTGGAG 1 cut(s) 87
Bse1I ACTGG 1 cut(s) 102
Bse3DI GCAATG 1 cut(s) 297
BseGI GGATG 1 cut(s) 235
BseMI GCAATG 1 cut(s) 297
BseNI ACTGG 1 cut(s) 102
Bsp143I GATC 1 cut(s) 200
BspACI CCGC 1 cut(s) 14
BspLI GGNNCC 1 cut(s) 102
BspPI GGATC 1 cut(s) 195
BsrDI GCAATG 1 cut(s) 297
BsrI ACTGG 1 cut(s) 102
BssMI GATC 1 cut(s) 200
BstF5I GGATG 1 cut(s) 235
BstKTI GATC 1 cut(s) 203
BstMBI GATC 1 cut(s) 200
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstNSI RCATGY 1 cut(s) 254
BstX2I RGATCY 1 cut(s) 200
BstYI RGATCY 1 cut(s) 200
BtrI CACGTC 1 cut(s) 152
BtsCI GGATG 1 cut(s) 235
BtsIMutI CAGTG 2 cut(s) 136, 206
CseI GACGC 1 cut(s) 44
CviAII CATG 2 cut(s) 50, 251
CviJI RGCY 1 cut(s) 101
CviKI_1 RGCY 1 cut(s) 101
DpnI GATC 1 cut(s) 202
DpnII GATC 1 cut(s) 200
DraIII CACNNNGTG 2 cut(s) 77, 116
FaeI CATG 2 cut(s) 53, 254
FaiI YATR 5 cut(s) 20, 51, 221, 252, 288
FatI CATG 2 cut(s) 49, 250
FokI GGATG 1 cut(s) 242
FspBI CTAG 2 cut(s) 75, 258
GsuI CTGGAG 1 cut(s) 87
HgaI GACGC 1 cut(s) 44
Hin1II CATG 2 cut(s) 53, 254
HincII GTYRAC 1 cut(s) 95
HindII GTYRAC 1 cut(s) 95
HinfI GANTC 1 cut(s) 8
HphI GGTGA 1 cut(s) 102
Hpy166II GTNNAC 1 cut(s) 95
Hpy188III TCNNGA 2 cut(s) 140, 301
Hpy8I GTNNAC 1 cut(s) 95
HpyAV CCTTC 1 cut(s) 165
HpyCH4IV ACGT 1 cut(s) 151
HpyCH4V TGCA 1 cut(s) 290
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpySE526I ACGT 1 cut(s) 151
Hsp92II CATG 2 cut(s) 53, 254
Kzo9I GATC 1 cut(s) 200
LmnI GCTCC 1 cut(s) 106
LpnPI CCDG 5 cut(s) 83, 117, 138, 153, 256
LweI GCATC 2 cut(s) 116, 232
MaeI CTAG 2 cut(s) 75, 258
MaeII ACGT 1 cut(s) 151
MaeIII GTNAC 1 cut(s) 77
MalI GATC 1 cut(s) 202
MboI GATC 1 cut(s) 200
MflI RGATCY 1 cut(s) 200
MluCI AATT 2 cut(s) 26, 222
MnlI CCTC 2 cut(s) 166, 214
MseI TTAA 1 cut(s) 225
MwoI GCNNNNNNNGC 1 cut(s) 251
NdeII GATC 1 cut(s) 200
NlaIII CATG 2 cut(s) 53, 254
NlaIV GGNNCC 1 cut(s) 102
NmuCI GTSAC 1 cut(s) 77
NspI RCATGY 1 cut(s) 254
PfeI GAWTC 1 cut(s) 8
PflFI GACNNNGTC 1 cut(s) 125
PsiI TTATAA 1 cut(s) 221
PspN4I GGNNCC 1 cut(s) 102
PsuI RGATCY 1 cut(s) 200
PsyI GACNNNGTC 1 cut(s) 125
SaqAI TTAA 1 cut(s) 225
Sau3AI GATC 1 cut(s) 200
SetI ASST 5 cut(s) 76, 84, 154, 177, 219
SfaNI GCATC 2 cut(s) 116, 232
SmlI CTYRAG 1 cut(s) 301
SmoI CTYRAG 1 cut(s) 301
Sse9I AATT 2 cut(s) 26, 222
SsiI CCGC 1 cut(s) 14
SspMI CTAG 2 cut(s) 75, 258
TaiI ACGT 1 cut(s) 154
TaqI TCGA 1 cut(s) 262
TasI AATT 2 cut(s) 26, 222
TfiI GAWTC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TscAI CASTG 2 cut(s) 136, 213
TseFI GTSAC 1 cut(s) 77
Tsp45I GTSAC 1 cut(s) 77
TspDTI ATGAA 3 cut(s) 102, 210, 246
TspGWI ACGGA 1 cut(s) 125
TspRI CASTG 2 cut(s) 136, 213
Tth111I GACNNNGTC 1 cut(s) 125
XapI RAATTY 1 cut(s) 26
XceI RCATGY 1 cut(s) 254
XspI CTAG 2 cut(s) 75, 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.