Rh6AG111400

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001771
Physical Location & Seq
Forward (+)
16481091 .. 16482557
1467 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG111400.1

Sequence Viewer

Length: 747 bp
ATGTTTCTTAAGGGCTGCTATCCAAATGTCCTTGCAATAACTGAAGATCTACATGATGTTCACAGTCTAGGAAAGGAGGCTGCTGCAGTTCAGCGTTCTCTTGTGGAAGACCTTTCAAAGGCAAATGGAATTCTTCTTCCACTGGAAACAGTATTGTCCAAAGATGTAGCTGCTATGACTGATGCTATGTGTAGGGAAAGAGTGACCAATATGGAAATATCTCCGATTCATGGACAAGCCATATACCAGTCCTATTCTTTAAAAATCAGGGAGGCTTGCCAGACCTTACATCCCTTGGTGTCCTCACTTACCTCATCTGTGAAGGGGCTCTATTCTATGTTGACCAGGCTTGCACGAACTGCAAGTCTTCATGCTGGGGATCTTCATAAAGCTCTTGAAGGACTAGGAGAAAGCCAGGAAGTAGAATCGCCAGTAACTGATGTATCAAGGCCAGATCTTGCTACTGATGCTGCTGGGTTTGATGACAAGGAGAGAGAGAACCTCTCCATGTCAAATGGTGAGAGCATCAAAGATTTTGTTGGCATTGGACTTCCTTTGGAAGATAAAGGATGGTTATCTCCACCAGATAGTATCTGCAGTAGTAGTACAGATTCTGGCATTTCCTTGCCTGAAATGAGTGTTCCAGTTAGCTTCAATGATCAAGAAGATAAAGCAATAGCTTTTGCACGGACCTGGTGGCAGAGATGCTATAGATTTTCAAAATACCACCCCTTACTCTCAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006401 GO:0006402 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019219 GO:0019222 GO:0019439 GO:0019538 GO:0019637 GO:0030258 GO:0031323 GO:0031974 GO:0031981 GO:0032204 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034655 GO:0036211 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046486 GO:0046488 GO:0046700 GO:0046777 GO:0046834 GO:0046854 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140096 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901575 GO:2001020
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
FATC PI3_PI4_kinase SMG1 WD40

Protein Analysis

248

Amino Acids

27.13

Weight (kDa)

5.07

Isoelectric Point (pI)

39.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 387
AcsI RAATTY 1 cut(s) 129
AcuI CTGAAG 1 cut(s) 63
AfaI GTAC 1 cut(s) 607
AfiI CCNNNNNNNGG 2 cut(s) 118, 230
AflII CTTAAG 1 cut(s) 8
AgsI TTSAA 4 cut(s) 117, 398, 655, 720
AjnI CCWGG 3 cut(s) 344, 414, 692
AluBI AGCT 5 cut(s) 170, 392, 651, 680, 744
AluI AGCT 5 cut(s) 170, 392, 651, 680, 744
AlwI GGATC 1 cut(s) 387
AlwNI CAGNNNCTG 2 cut(s) 437, 614
AoxI GGCC 1 cut(s) 449
ApeKI GCWGC 5 cut(s) 15, 80, 83, 170, 470
ApoI RAATTY 1 cut(s) 129
ArsI GACNNNNNNTTYG 2 cut(s) 349, 381
AspS9I GGNCC 1 cut(s) 690
AsuHPI GGTGA 1 cut(s) 530
AvaII GGWCC 1 cut(s) 690
BaeI ACNNNNGTAYC 2 cut(s) 426, 459
BanII GRGCYC 1 cut(s) 330
BbsI GAAGAC 2 cut(s) 114, 359
BbvI GCAGC 5 cut(s) 2, 67, 70, 157, 457
BccI CCATC 1 cut(s) 564
BciT130I CCWGG 3 cut(s) 346, 416, 694
BclI TGATCA 1 cut(s) 658
BfaI CTAG 2 cut(s) 68, 404
BfmI CTRYAG 3 cut(s) 84, 595, 709
BfrI CTTAAG 1 cut(s) 8
BglII AGATCT 2 cut(s) 46, 454
BisI GCNGC 5 cut(s) 16, 81, 84, 171, 471
BlsI GCNGC 5 cut(s) 17, 82, 85, 172, 472
Bme1390I CCNGG 3 cut(s) 346, 416, 694
Bme18I GGWCC 1 cut(s) 690
BmgT120I GGNCC 1 cut(s) 690
BmrFI CCNGG 3 cut(s) 346, 416, 694
BmsI GCATC 4 cut(s) 172, 457, 534, 695
BpiI GAAGAC 2 cut(s) 114, 359
BplI GAGNNNNNCTC 4 cut(s) 486, 518, 488, 520
BpuEI CTTGAG 1 cut(s) 724
BsaBI GATNNNNATC 1 cut(s) 574
BsaJI CCNNGG 1 cut(s) 294
Bsc4I CCNNNNNNNGG 2 cut(s) 118, 230
Bse1I ACTGG 4 cut(s) 147, 247, 431, 644
Bse8I GATNNNNATC 1 cut(s) 574
BseBI CCWGG 3 cut(s) 346, 416, 694
BseDI CCNNGG 1 cut(s) 294
BseGI GGATG 2 cut(s) 289, 575
BseJI GATNNNNATC 1 cut(s) 574
BseLI CCNNNNNNNGG 2 cut(s) 118, 230
BseNI ACTGG 4 cut(s) 147, 247, 431, 644
BseXI GCAGC 5 cut(s) 2, 67, 70, 157, 457
BseYI CCCAGC 2 cut(s) 374, 473
BshFI GGCC 1 cut(s) 451
BslI CCNNNNNNNGG 2 cut(s) 118, 230
BsnI GGCC 1 cut(s) 451
Bsp1286I GDGCHC 1 cut(s) 330
Bsp143I GATC 4 cut(s) 46, 379, 454, 658
BspANI GGCC 1 cut(s) 451
BspMAI CTGCAG 2 cut(s) 88, 599
BspPI GGATC 1 cut(s) 387
BspTI CTTAAG 1 cut(s) 8
BsrI ACTGG 4 cut(s) 147, 247, 431, 644
BssECI CCNNGG 1 cut(s) 294
BssMI GATC 4 cut(s) 46, 379, 454, 658
BssT1I CCWWGG 1 cut(s) 294
Bst2UI CCWGG 3 cut(s) 346, 416, 694
Bst4CI ACNGT 2 cut(s) 65, 151
BstAFI CTTAAG 1 cut(s) 8
BstAPI GCANNNNNTGC 1 cut(s) 359
BstC8I GCNNGC 2 cut(s) 277, 351
BstENI CCTNNNNNAGG 1 cut(s) 116
BstF5I GGATG 2 cut(s) 289, 575
BstKTI GATC 4 cut(s) 49, 382, 457, 661
BstMBI GATC 4 cut(s) 46, 379, 454, 658
BstMWI GCNNNNNNNGC 2 cut(s) 359, 467
BstNI CCWGG 3 cut(s) 346, 416, 694
BstSCI CCNGG 3 cut(s) 344, 414, 692
BstSFI CTRYAG 3 cut(s) 84, 595, 709
BstV1I GCAGC 5 cut(s) 2, 67, 70, 157, 457
BstV2I GAAGAC 2 cut(s) 114, 359
BstX2I RGATCY 3 cut(s) 46, 379, 454
BstYI RGATCY 3 cut(s) 46, 379, 454
BsuRI GGCC 1 cut(s) 451
BtsCI GGATG 2 cut(s) 289, 575
BtsIMutI CAGTG 1 cut(s) 140
Cac8I GCNNGC 2 cut(s) 277, 351
CaiI CAGNNNCTG 2 cut(s) 437, 614
Cfr13I GGNCC 1 cut(s) 690
CsiI ACCWGGT 1 cut(s) 692
Csp6I GTAC 1 cut(s) 606
CviAII CATG 4 cut(s) 53, 230, 371, 508
CviQI GTAC 1 cut(s) 606
DpnI GATC 4 cut(s) 48, 381, 456, 660
DpnII GATC 4 cut(s) 46, 379, 454, 658
DraI TTTAAA 1 cut(s) 261
Eco130I CCWWGG 1 cut(s) 294
Eco24I GRGCYC 1 cut(s) 330
Eco47I GGWCC 1 cut(s) 690
Eco57I CTGAAG 1 cut(s) 63
EcoNI CCTNNNNNAGG 1 cut(s) 116
EcoRI GAATTC 1 cut(s) 129
EcoRII CCWGG 3 cut(s) 344, 414, 692
EcoT14I CCWWGG 1 cut(s) 294
EcoT38I GRGCYC 1 cut(s) 330
ErhI CCWWGG 1 cut(s) 294
FaeI CATG 4 cut(s) 56, 233, 374, 511
FatI CATG 4 cut(s) 52, 229, 370, 507
FbaI TGATCA 1 cut(s) 658
Fnu4HI GCNGC 5 cut(s) 16, 81, 84, 171, 471
FokI GGATG 2 cut(s) 276, 582
FriOI GRGCYC 1 cut(s) 330
Fsp4HI GCNGC 5 cut(s) 16, 81, 84, 171, 471
FspBI CTAG 2 cut(s) 68, 404
GluI GCNGC 5 cut(s) 16, 81, 84, 171, 471
GsaI CCCAGC 2 cut(s) 378, 477
HaeIII GGCC 1 cut(s) 451
Hin1II CATG 4 cut(s) 56, 233, 374, 511
HincII GTYRAC 1 cut(s) 342
HindII GTYRAC 1 cut(s) 342
HinfI GANTC 3 cut(s) 226, 425, 611
HphI GGTGA 1 cut(s) 530
Hpy166II GTNNAC 2 cut(s) 61, 342
Hpy188I TCNGA 1 cut(s) 225
Hpy188III TCNNGA 2 cut(s) 395, 662
Hpy8I GTNNAC 2 cut(s) 61, 342
HpyAV CCTTC 2 cut(s) 316, 392
HpyCH4III ACNGT 2 cut(s) 65, 151
HpyCH4V TGCA 6 cut(s) 35, 86, 353, 362, 597, 686
HpyF10VI GCNNNNNNNGC 2 cut(s) 359, 467
Hsp92II CATG 4 cut(s) 56, 233, 374, 511
Ksp22I TGATCA 1 cut(s) 658
Kzo9I GATC 4 cut(s) 46, 379, 454, 658
Lsp1109I GCAGC 5 cut(s) 2, 67, 70, 157, 457
LweI GCATC 4 cut(s) 172, 457, 534, 695
MabI ACCWGGT 1 cut(s) 692
MaeI CTAG 2 cut(s) 68, 404
MaeIII GTNAC 2 cut(s) 202, 433
MalI GATC 4 cut(s) 48, 381, 456, 660
MboI GATC 4 cut(s) 46, 379, 454, 658
MboII GAAGA 8 cut(s) 56, 119, 125, 128, 359, 374, 572, 677
MflI RGATCY 3 cut(s) 46, 379, 454
MhlI GDGCHC 1 cut(s) 330
MluCI AATT 1 cut(s) 129
MnlI CCTC 5 cut(s) 70, 265, 313, 322, 512
MseI TTAA 2 cut(s) 9, 260
MspCI CTTAAG 1 cut(s) 8
MspR9I CCNGG 3 cut(s) 346, 416, 694
MvaI CCWGG 3 cut(s) 346, 416, 694
MwoI GCNNNNNNNGC 2 cut(s) 359, 467
NdeII GATC 4 cut(s) 46, 379, 454, 658
NlaIII CATG 4 cut(s) 56, 233, 374, 511
NmuCI GTSAC 1 cut(s) 202
PfeI GAWTC 3 cut(s) 226, 425, 611
PkrI GCNGC 5 cut(s) 17, 82, 85, 172, 472
Psp6I CCWGG 3 cut(s) 344, 414, 692
PspFI CCCAGC 2 cut(s) 374, 473
PspGI CCWGG 3 cut(s) 344, 414, 692
PspPI GGNCC 1 cut(s) 690
PstI CTGCAG 2 cut(s) 88, 599
PstNI CAGNNNCTG 2 cut(s) 437, 614
PsuI RGATCY 3 cut(s) 46, 379, 454
RsaI GTAC 1 cut(s) 607
RsaNI GTAC 1 cut(s) 606
SaqAI TTAA 2 cut(s) 9, 260
SatI GCNGC 5 cut(s) 16, 81, 84, 171, 471
Sau3AI GATC 4 cut(s) 46, 379, 454, 658
Sau96I GGNCC 1 cut(s) 690
ScrFI CCNGG 3 cut(s) 346, 416, 694
SduI GDGCHC 1 cut(s) 330
SexAI ACCWGGT 1 cut(s) 692
SfaNI GCATC 4 cut(s) 172, 457, 534, 695
SfcI CTRYAG 3 cut(s) 84, 595, 709
SinI GGWCC 1 cut(s) 690
SmlI CTYRAG 2 cut(s) 8, 739
SmoI CTYRAG 2 cut(s) 8, 739
Sse9I AATT 1 cut(s) 129
SspMI CTAG 2 cut(s) 68, 404
StyD4I CCNGG 3 cut(s) 344, 414, 692
StyI CCWWGG 1 cut(s) 294
TaaI ACNGT 2 cut(s) 65, 151
TasI AATT 1 cut(s) 129
TatI WGTACW 1 cut(s) 605
TfiI GAWTC 3 cut(s) 226, 425, 611
Tru1I TTAA 2 cut(s) 9, 260
Tru9I TTAA 2 cut(s) 9, 260
TscAI CASTG 1 cut(s) 147
TseFI GTSAC 1 cut(s) 202
TseI GCWGC 5 cut(s) 15, 80, 83, 170, 470
Tsp45I GTSAC 1 cut(s) 202
TspDTI ATGAA 3 cut(s) 218, 359, 374
TspGWI ACGGA 1 cut(s) 703
TspRI CASTG 1 cut(s) 147
Vha464I CTTAAG 1 cut(s) 8
VpaK11BI GGWCC 1 cut(s) 690
XagI CCTNNNNNAGG 1 cut(s) 116
XapI RAATTY 1 cut(s) 129
XspI CTAG 2 cut(s) 68, 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.