Rroxscaffold_7G00207330

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001771
Physical Location & Seq
Forward (+)
57221427 .. 57227791
6365 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00207330.1

Sequence Viewer

Length: 465 bp
ATGGTAAAGCAAGCAGAGGGTGATGATGCAAGGCCTCCACCGCTCTTCTCTCTGTCGCTTCCCAAGGACGATTCCTCTTCCCCCTCTAAATCCGACGACGATGACTCCGATCGACTCGCCGCCCTCAACTCCCTCCACCGCGCCATTCTCTACCCTCCCAACTCCCTCCTCGTCACTCACTCCGCCTCTTTCCTCGCCCAGGGCTTCTCTCAGCTTCTCTCCGATAAATGTTATGGGGTGAGGCAAGAGGCTGCGGTGGCATATGGTGCTCTTTGTGCTGTGGTTTGCTCAATTCCTGTAACTTCAAATGGAAGACAGAACCATGTTATGCTTGGGAGCTTGGTTGACCGCTTCATTGGTTGGGCGCTGCCATTGCTTAGCAATATCAGCGCCACCGCAGAATTGGCATTGGACGGCCTGCAAGAGTTTCTTAACGTTGGGGATGTTGGCGGGATCGAGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006401 GO:0006402 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019219 GO:0019222 GO:0019439 GO:0019538 GO:0019637 GO:0030258 GO:0031323 GO:0031974 GO:0031981 GO:0032204 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034655 GO:0036211 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046486 GO:0046488 GO:0046700 GO:0046777 GO:0046834 GO:0046854 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140096 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901575 GO:2001020
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
FATC PI3_PI4_kinase SMG1 WD40

Protein Analysis

154

Amino Acids

16.36

Weight (kDa)

4.71

Isoelectric Point (pI)

37.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 43
AccII CGCG 1 cut(s) 141
AciI CCGC 8 cut(s) 41, 120, 139, 183, 254, 349, 396, 450
AclI AACGTT 1 cut(s) 435
AclWI GGATC 1 cut(s) 461
AfiI CCNNNNNNNGG 1 cut(s) 199
AgsI TTSAA 1 cut(s) 306
AjnI CCWGG 1 cut(s) 198
AluBI AGCT 2 cut(s) 214, 339
AluI AGCT 2 cut(s) 214, 339
Alw21I GWGCWC 1 cut(s) 271
AlwI GGATC 1 cut(s) 461
AoxI GGCC 2 cut(s) 32, 415
ApeKI GCWGC 2 cut(s) 251, 367
AspLEI GCGC 3 cut(s) 143, 367, 392
AsuHPI GGTGA 2 cut(s) 32, 250
BbsI GAAGAC 1 cut(s) 319
Bbv12I GWGCWC 1 cut(s) 271
BbvI GCAGC 2 cut(s) 238, 354
BceAI ACGGC 1 cut(s) 430
BciT130I CCWGG 1 cut(s) 200
BfoI RGCGCY 2 cut(s) 368, 393
BisI GCNGC 3 cut(s) 120, 252, 368
BlpI GCTNAGC 1 cut(s) 377
BlsI GCNGC 3 cut(s) 121, 253, 369
Bme1390I CCNGG 1 cut(s) 200
BmrFI CCNGG 1 cut(s) 200
BmsI GCATC 1 cut(s) 16
BpiI GAAGAC 1 cut(s) 319
Bpu1102I GCTNAGC 1 cut(s) 377
BsaJI CCNNGG 3 cut(s) 63, 198, 199
BsaXI ACNNNNNCTCC 2 cut(s) 89, 119
Bsc4I CCNNNNNNNGG 1 cut(s) 199
Bse3DI GCAATG 1 cut(s) 371
BseBI CCWGG 1 cut(s) 200
BseDI CCNNGG 3 cut(s) 63, 198, 199
BseGI GGATG 1 cut(s) 448
BseLI CCNNNNNNNGG 1 cut(s) 199
BseMI GCAATG 1 cut(s) 371
BseMII CTCAG 1 cut(s) 224
BseRI GAGGAG 1 cut(s) 158
BseXI GCAGC 2 cut(s) 238, 354
Bsh1236I CGCG 1 cut(s) 141
Bsh1285I CGRYCG 1 cut(s) 112
BshFI GGCC 2 cut(s) 34, 417
BsiEI CGRYCG 1 cut(s) 112
BsiHKAI GWGCWC 1 cut(s) 271
BslI CCNNNNNNNGG 1 cut(s) 199
BsnI GGCC 2 cut(s) 34, 417
Bsp1286I GDGCHC 1 cut(s) 271
Bsp143I GATC 2 cut(s) 109, 453
Bsp1720I GCTNAGC 1 cut(s) 377
BspACI CCGC 8 cut(s) 41, 120, 139, 183, 254, 349, 396, 450
BspANI GGCC 2 cut(s) 34, 417
BspCNI CTCAG 1 cut(s) 223
BspFNI CGCG 1 cut(s) 141
BspPI GGATC 1 cut(s) 461
BspQI GCTCTTC 1 cut(s) 50
BsrBI CCGCTC 1 cut(s) 43
BsrDI GCAATG 1 cut(s) 371
BssECI CCNNGG 3 cut(s) 63, 198, 199
BssMI GATC 2 cut(s) 109, 453
BssT1I CCWWGG 1 cut(s) 63
Bst2UI CCWGG 1 cut(s) 200
Bst6I CTCTTC 2 cut(s) 50, 82
BstAPI GCANNNNNTGC 1 cut(s) 266
BstC8I GCNNGC 2 cut(s) 12, 419
BstDEI CTNAG 2 cut(s) 210, 377
BstENI CCTNNNNNAGG 1 cut(s) 197
BstF5I GGATG 1 cut(s) 448
BstFNI CGCG 1 cut(s) 141
BstH2I RGCGCY 2 cut(s) 368, 393
BstHHI GCGC 3 cut(s) 143, 367, 392
BstKTI GATC 2 cut(s) 112, 456
BstMBI GATC 2 cut(s) 109, 453
BstMCI CGRYCG 1 cut(s) 112
BstMWI GCNNNNNNNGC 7 cut(s) 40, 257, 266, 275, 373, 387, 404
BstNI CCWGG 1 cut(s) 200
BstSCI CCNGG 1 cut(s) 198
BstUI CGCG 1 cut(s) 141
BstV1I GCAGC 2 cut(s) 238, 354
BstV2I GAAGAC 1 cut(s) 319
BsuRI GGCC 2 cut(s) 34, 417
BtsCI GGATG 1 cut(s) 448
Cac8I GCNNGC 2 cut(s) 12, 419
CfoI GCGC 3 cut(s) 143, 367, 392
CviAII CATG 1 cut(s) 323
CviJI RGCY 6 cut(s) 34, 204, 214, 251, 339, 417
CviKI_1 RGCY 6 cut(s) 34, 204, 214, 251, 339, 417
DdeI CTNAG 2 cut(s) 210, 377
DpnI GATC 2 cut(s) 111, 455
DpnII GATC 2 cut(s) 109, 453
Eam1104I CTCTTC 2 cut(s) 50, 82
EarI CTCTTC 2 cut(s) 50, 82
EciI GGCGGA 1 cut(s) 172
Eco130I CCWWGG 1 cut(s) 63
Eco147I AGGCCT 1 cut(s) 34
EcoNI CCTNNNNNAGG 1 cut(s) 197
EcoRII CCWGG 1 cut(s) 198
EcoT14I CCWWGG 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 63
FaeI CATG 1 cut(s) 326
FaiI YATR 5 cut(s) 234, 262, 264, 324, 329
FalI AAGNNNNNCTT 2 cut(s) 414, 446
FatI CATG 1 cut(s) 322
FauI CCCGC 1 cut(s) 443
FauNDI CATATG 1 cut(s) 262
Fnu4HI GCNGC 3 cut(s) 120, 252, 368
FokI GGATG 1 cut(s) 455
Fsp4HI GCNGC 3 cut(s) 120, 252, 368
GlaI GCGC 3 cut(s) 142, 366, 391
GluI GCNGC 3 cut(s) 120, 252, 368
HaeII RGCGCY 2 cut(s) 368, 393
HaeIII GGCC 2 cut(s) 34, 417
HhaI GCGC 3 cut(s) 143, 367, 392
Hin1II CATG 1 cut(s) 326
Hin6I GCGC 3 cut(s) 141, 365, 390
HinP1I GCGC 3 cut(s) 141, 365, 390
HincII GTYRAC 1 cut(s) 346
HindII GTYRAC 1 cut(s) 346
HinfI GANTC 3 cut(s) 71, 104, 114
HphI GGTGA 2 cut(s) 32, 250
Hpy166II GTNNAC 1 cut(s) 346
Hpy188I TCNGA 3 cut(s) 94, 109, 223
Hpy188III TCNNGA 1 cut(s) 457
Hpy8I GTNNAC 1 cut(s) 346
Hpy99I CGWCG 2 cut(s) 98, 101
HpyCH4IV ACGT 1 cut(s) 435
HpyCH4V TGCA 2 cut(s) 29, 421
HpyF10VI GCNNNNNNNGC 7 cut(s) 40, 257, 266, 275, 373, 387, 404
HpyF3I CTNAG 2 cut(s) 210, 377
HpySE526I ACGT 1 cut(s) 435
Hsp92II CATG 1 cut(s) 326
HspAI GCGC 3 cut(s) 141, 365, 390
Kzo9I GATC 2 cut(s) 109, 453
LguI GCTCTTC 1 cut(s) 50
LmnI GCTCC 1 cut(s) 336
LpnPI CCDG 4 cut(s) 185, 212, 309, 431
Lsp1109I GCAGC 2 cut(s) 238, 354
LweI GCATC 1 cut(s) 16
MaeII ACGT 1 cut(s) 435
MaeIII GTNAC 2 cut(s) 172, 298
MalI GATC 2 cut(s) 111, 455
MbiI CCGCTC 1 cut(s) 43
MboI GATC 2 cut(s) 109, 453
MboII GAAGA 3 cut(s) 37, 69, 324
MhlI GDGCHC 1 cut(s) 271
MluCI AATT 2 cut(s) 291, 401
MlyI GAGTC 2 cut(s) 98, 108
MmeI TCCRAC 1 cut(s) 117
MseI TTAA 1 cut(s) 432
MspR9I CCNGG 1 cut(s) 200
MvaI CCWGG 1 cut(s) 200
MvnI CGCG 1 cut(s) 141
MwoI GCNNNNNNNGC 7 cut(s) 40, 257, 266, 275, 373, 387, 404
NdeI CATATG 1 cut(s) 262
NdeII GATC 2 cut(s) 109, 453
NlaIII CATG 1 cut(s) 326
NmuCI GTSAC 1 cut(s) 172
PasI CCCWGGG 1 cut(s) 199
PceI AGGCCT 1 cut(s) 34
PciSI GCTCTTC 1 cut(s) 50
PcsI WCGNNNNNNNCGW 1 cut(s) 105
PfeI GAWTC 1 cut(s) 71
PkrI GCNGC 3 cut(s) 121, 253, 369
Ple19I CGATCG 1 cut(s) 112
PleI GAGTC 2 cut(s) 98, 108
PpsI GAGTC 2 cut(s) 98, 108
Psp1406I AACGTT 1 cut(s) 435
Psp6I CCWGG 1 cut(s) 198
PspGI CCWGG 1 cut(s) 198
PvuI CGATCG 1 cut(s) 112
SapI GCTCTTC 1 cut(s) 50
SaqAI TTAA 1 cut(s) 432
SatI GCNGC 3 cut(s) 120, 252, 368
Sau3AI GATC 2 cut(s) 109, 453
SchI GAGTC 2 cut(s) 98, 108
ScrFI CCNGG 1 cut(s) 200
SduI GDGCHC 1 cut(s) 271
SetI ASST 3 cut(s) 216, 341, 438
SfaNI GCATC 1 cut(s) 16
Sse9I AATT 2 cut(s) 291, 401
SseBI AGGCCT 1 cut(s) 34
SsiI CCGC 8 cut(s) 41, 120, 139, 183, 254, 349, 396, 450
StuI AGGCCT 1 cut(s) 34
StyD4I CCNGG 1 cut(s) 198
StyI CCWWGG 1 cut(s) 63
TaiI ACGT 1 cut(s) 438
TaqI TCGA 2 cut(s) 112, 456
TasI AATT 2 cut(s) 291, 401
TauI GCSGC 1 cut(s) 122
TfiI GAWTC 1 cut(s) 71
Tru1I TTAA 1 cut(s) 432
Tru9I TTAA 1 cut(s) 432
TseFI GTSAC 1 cut(s) 172
TseI GCWGC 2 cut(s) 251, 367
Tsp45I GTSAC 1 cut(s) 172
TspDTI ATGAA 1 cut(s) 343
XagI CCTNNNNNAGG 1 cut(s) 197
XcmI CCANNNNNNNNNTGG 2 cut(s) 329, 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.