Rroxscaffold_2G00119970

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
52064341 .. 52065493
1153 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00119970.1

Sequence Viewer

Length: 384 bp
ATGAAACTAGATGGTCGAGATATATCCAACAACAGAGAAATTAGTATCTCCGAACAAGTGGACTATCTACTTAAGCAAGCCACTAGTGTAGACAATCTTTGCAACATGTATGAAGTTGTCCGTCTGAGTTCAATTCTCAGTATCATGAGAAGCACTGCCACTGCCCACAAGGAGTCTGTATCACAAGTTTACCACCAATGCAATCAGCTCACTTTTGCACAGGTTGCATTTGGTTTAGAAGATCTTACCTCAGCATACAGGAATATCAGAAGTATCAATCATCCACAATATAGGAAATTCTTGATTTCGTCAATGACATCTGCCGACCACCTCTTCCTTTCTGGTCTGAGAATTTCTTTGTTTGATAATAAGTTAAGAATGTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

127

Amino Acids

14.55

Weight (kDa)

8.64

Isoelectric Point (pI)

35.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FATC PF02260 15 - 38 7e-09 FATC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 90
AcsI RAATTY 2 cut(s) 296, 351
AflII CTTAAG 1 cut(s) 71
AflIII ACRYGT 1 cut(s) 105
AgsI TTSAA 1 cut(s) 132
AhlI ACTAGT 1 cut(s) 83
AluBI AGCT 1 cut(s) 208
AluI AGCT 1 cut(s) 208
ApoI RAATTY 2 cut(s) 296, 351
BbvCI CCTCAGC 1 cut(s) 250
BccI CCATC 1 cut(s) 5
BcuI ACTAGT 1 cut(s) 83
BfaI CTAG 2 cut(s) 8, 84
BfrI CTTAAG 1 cut(s) 71
BglII AGATCT 1 cut(s) 241
Bpu10I CCTNAGC 1 cut(s) 250
BseGI GGATG 1 cut(s) 280
BseMII CTCAG 4 cut(s) 116, 151, 264, 338
Bsp143I GATC 1 cut(s) 241
BspCNI CTCAG 4 cut(s) 117, 150, 263, 339
BspHI TCATGA 1 cut(s) 144
BspTI CTTAAG 1 cut(s) 71
BssMI GATC 1 cut(s) 241
Bst6I CTCTTC 1 cut(s) 338
BstAFI CTTAAG 1 cut(s) 71
BstAPI GCANNNNNTGC 1 cut(s) 224
BstC8I GCNNGC 1 cut(s) 78
BstDEI CTNAG 4 cut(s) 125, 137, 250, 347
BstF5I GGATG 1 cut(s) 280
BstKTI GATC 1 cut(s) 244
BstMBI GATC 1 cut(s) 241
BstMWI GCNNNNNNNGC 1 cut(s) 224
BstNSI RCATGY 1 cut(s) 109
BstX2I RGATCY 1 cut(s) 241
BstYI RGATCY 1 cut(s) 241
BtsCI GGATG 1 cut(s) 280
BtsI GCAGTG 2 cut(s) 153, 159
BtsIMutI CAGTG 2 cut(s) 153, 159
Cac8I GCNNGC 1 cut(s) 78
CciI TCATGA 1 cut(s) 144
CviAII CATG 2 cut(s) 106, 145
CviJI RGCY 2 cut(s) 80, 208
CviKI_1 RGCY 2 cut(s) 80, 208
DdeI CTNAG 4 cut(s) 125, 137, 250, 347
DpnI GATC 1 cut(s) 243
DpnII GATC 1 cut(s) 241
Eam1104I CTCTTC 1 cut(s) 338
EarI CTCTTC 1 cut(s) 338
FaeI CATG 2 cut(s) 109, 148
FaiI YATR 6 cut(s) 23, 107, 111, 146, 256, 291
FatI CATG 2 cut(s) 105, 144
FblI GTMKAC 1 cut(s) 90
FokI GGATG 1 cut(s) 267
FspBI CTAG 2 cut(s) 8, 84
Hin1II CATG 2 cut(s) 109, 148
HinfI GANTC 1 cut(s) 173
Hpy166II GTNNAC 3 cut(s) 61, 91, 190
Hpy188I TCNGA 4 cut(s) 52, 126, 269, 348
Hpy188III TCNNGA 3 cut(s) 17, 145, 301
Hpy8I GTNNAC 3 cut(s) 61, 91, 190
HpyCH4V TGCA 4 cut(s) 102, 201, 218, 227
HpyF10VI GCNNNNNNNGC 1 cut(s) 224
HpyF3I CTNAG 4 cut(s) 125, 137, 250, 347
Hsp92II CATG 2 cut(s) 109, 148
Kzo9I GATC 1 cut(s) 241
LpnPI CCDG 3 cut(s) 206, 244, 327
MaeI CTAG 2 cut(s) 8, 84
MalI GATC 1 cut(s) 243
MboI GATC 1 cut(s) 241
MboII GAAGA 2 cut(s) 251, 325
MflI RGATCY 1 cut(s) 241
MluCI AATT 4 cut(s) 39, 132, 296, 351
MlyI GAGTC 1 cut(s) 182
MmeI TCCRAC 1 cut(s) 51
MnlI CCTC 2 cut(s) 259, 341
MseI TTAA 2 cut(s) 72, 374
MspCI CTTAAG 1 cut(s) 71
MwoI GCNNNNNNNGC 1 cut(s) 224
NdeII GATC 1 cut(s) 241
NlaIII CATG 2 cut(s) 109, 148
NspI RCATGY 1 cut(s) 109
PagI TCATGA 1 cut(s) 144
PciI ACATGT 1 cut(s) 105
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
PscI ACATGT 1 cut(s) 105
PsuI RGATCY 1 cut(s) 241
SaqAI TTAA 2 cut(s) 72, 374
Sau3AI GATC 1 cut(s) 241
SchI GAGTC 1 cut(s) 182
SetI ASST 4 cut(s) 210, 225, 251, 333
SmlI CTYRAG 1 cut(s) 71
SmoI CTYRAG 1 cut(s) 71
SpeI ACTAGT 1 cut(s) 83
Sse9I AATT 4 cut(s) 39, 132, 296, 351
SspMI CTAG 2 cut(s) 8, 84
TaqI TCGA 1 cut(s) 16
TasI AATT 4 cut(s) 39, 132, 296, 351
Tru1I TTAA 2 cut(s) 72, 374
Tru9I TTAA 2 cut(s) 72, 374
TscAI CASTG 2 cut(s) 160, 166
TspDTI ATGAA 2 cut(s) 17, 126
TspGWI ACGGA 1 cut(s) 110
TspRI CASTG 2 cut(s) 160, 166
Vha464I CTTAAG 1 cut(s) 71
XapI RAATTY 2 cut(s) 296, 351
XceI RCATGY 1 cut(s) 109
XmiI GTMKAC 1 cut(s) 90
XspI CTAG 2 cut(s) 8, 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.