Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001771

Physical Location & Seq

Genomic Coordinates Forward (+)

15675601 .. 15676923

Gene Structure 1323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ23382

Sequence Viewer

CDS Protein Promoter (2k)

Length: 135 bp

ATGAAACTAGATGGTCGAGATATATCTGACAACAGAGAAATTAGTATCTCCGAAGAAGTGGGCTGTCTACTTAAGCAAGCCACTAGTGTAGACAATCTTTGCAACATGTATGAAGGTTGGACACCATGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000184 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006401 GO:0006402 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019219 GO:0019222 GO:0019439 GO:0019538 GO:0019637 GO:0030258 GO:0031323 GO:0031974 GO:0031981 GO:0032204 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034655 GO:0036211 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046486 GO:0046488 GO:0046700 GO:0046777 GO:0046834 GO:0046854 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140096 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901575 GO:2001020

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

FATC PI3_PI4_kinase SMG1 WD40

Protein Analysis

44

Amino Acids

5.03

Weight (kDa)

4.29

Isoelectric Point (pI)

28.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FATC	PF02260	15 - 44	3.7e-14	FATC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001771)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0124271 RchiOBHm_Chr6g0259991 RchiOBHm_Chr6g0260001 RchiOBHm_Chr6g0260221 RchiOBHm_Chr6g0260231 RchiOBHm_Chr6g0260571 RchiOBHm_Chr6g0260691 RchiOBHm_Chr6g0260701 RchiOBHm_Chr6g0260711 RchiOBHm_Chr6g0260721
rosa_laevigata	RLG00000014488
rosa_multiflora	Rmu_co8412781.1_g000001 Rmu_sc0000588.1_g000003 Rmu_sc0002968.1_g000004 Rmu_sc0004865.1_g000013 Rmu_sc0004865.1_g000014 Rmu_sc0036322.1_g000001 Rmu_sc0036891.1_g000002
rosa_roxburghii	Rroxscaffold_2G00119970 Rroxscaffold_2G00119990 Rroxscaffold_7G00207330 Rroxscaffold_7G00207340
rosa_samantha	Rh6AG087600 Rh6AG087700 Rh6AG108700 Rh6AG109000 Rh6AG109200 Rh6AG109600 Rh6AG110100 Rh6AG110300 Rh6AG110400 Rh6AG111300 Rh6AG111400 Rh6AG111500 Rh6AG111600 Rh6BG105100 Rh6BG105200 Rh6CG076300 Rh6CG076400 Rh6CG098000 Rh6CG098700 Rh6CG100500 Rh6CG101500 Rh6CG101600 Rh6DG093400 Rh6DG093500
rosa_wichuraiana	Rw6G009400 Rw6G009470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	67, 90
AflII	CTTAAG	1 cut(s)	71
AflIII	ACRYGT	1 cut(s)	105
AhlI	ACTAGT	1 cut(s)	83
BccI	CCATC	1 cut(s)	5
BcuI	ACTAGT	1 cut(s)	83
BfaI	CTAG	2 cut(s)	8, 84
BfrI	CTTAAG	1 cut(s)	71
BsaJI	CCNNGG	1 cut(s)	125
BseDI	CCNNGG	1 cut(s)	125
Bsp19I	CCATGG	1 cut(s)	125
BspTI	CTTAAG	1 cut(s)	71
BssECI	CCNNGG	1 cut(s)	125
BssT1I	CCWWGG	1 cut(s)	125
BstAFI	CTTAAG	1 cut(s)	71
BstC8I	GCNNGC	1 cut(s)	78
BstDSI	CCRYGG	1 cut(s)	125
BstNSI	RCATGY	1 cut(s)	109
BtgI	CCRYGG	1 cut(s)	125
Cac8I	GCNNGC	1 cut(s)	78
CviAII	CATG	2 cut(s)	106, 126
CviJI	RGCY	2 cut(s)	63, 80
CviKI_1	RGCY	2 cut(s)	63, 80
Eco130I	CCWWGG	1 cut(s)	125
EcoT14I	CCWWGG	1 cut(s)	125
ErhI	CCWWGG	1 cut(s)	125
FaeI	CATG	2 cut(s)	109, 129
FaiI	YATR	4 cut(s)	23, 107, 111, 127
FatI	CATG	2 cut(s)	105, 125
FblI	GTMKAC	2 cut(s)	67, 90
FspBI	CTAG	2 cut(s)	8, 84
FspEI	CC	7 cut(s)	44, 45, 64, 94, 99, 103, 112
Hin1II	CATG	2 cut(s)	109, 129
Hpy166II	GTNNAC	2 cut(s)	68, 91
Hpy188I	TCNGA	2 cut(s)	28, 52
Hpy188III	TCNNGA	1 cut(s)	17
Hpy8I	GTNNAC	2 cut(s)	68, 91
HpyAV	CCTTC	1 cut(s)	107
HpyCH4V	TGCA	1 cut(s)	102
Hsp92II	CATG	2 cut(s)	109, 129
MaeI	CTAG	2 cut(s)	8, 84
MboII	GAAGA	1 cut(s)	65
MluCI	AATT	1 cut(s)	39
MmeI	TCCRAC	1 cut(s)	98
MseI	TTAA	1 cut(s)	72
MspCI	CTTAAG	1 cut(s)	71
NcoI	CCATGG	1 cut(s)	125
NlaIII	CATG	2 cut(s)	109, 129
NspI	RCATGY	1 cut(s)	109
PciI	ACATGT	1 cut(s)	105
PscI	ACATGT	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	72
SetI	ASST	1 cut(s)	118
SgeI	CNNG	5 cut(s)	20, 29, 89, 96, 118
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
SpeI	ACTAGT	1 cut(s)	83
Sse9I	AATT	1 cut(s)	39
SspMI	CTAG	2 cut(s)	8, 84
StyI	CCWWGG	1 cut(s)	125
TaqI	TCGA	1 cut(s)	16
TasI	AATT	1 cut(s)	39
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TspDTI	ATGAA	2 cut(s)	17, 126
Vha464I	CTTAAG	1 cut(s)	71
XceI	RCATGY	1 cut(s)	109
XmiI	GTMKAC	2 cut(s)	67, 90
XspI	CTAG	2 cut(s)	8, 84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.