Rh6CG101600

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001771
Physical Location & Seq
Forward (+)
11280825 .. 11282505
1681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG101600.1

Sequence Viewer

Length: 1086 bp
ATGCACTTGCAGTTGATATTTTATTTCAGAGTTTGGAAGTGGACGTACAATAGTAACCAAGCGGTGGGAAATGGAAGAATTACCTCCTTCCAAGTTCATAAAGTTTTAAAAACTAATCTCCAGTTATTATCTTTGCAGATGTTTGGGCTTCTTCCAATCTCTGTGCAGAAAATACTACAATTTGATGCCCACCAGGTCCTTGCAATAACTGAAGATCTACATGGTGTTCACAGTCCAGGAAAGGAGGCTGCTGCATTTCACTGTTCTCTTGTGGAAGACCTTTCAAAGGCAAATGCAATTCTTCTTCCTCTGGAAATAGTATTGTCCAAAGATGTAGCTGCTATGACTAATGCTATGTGTAGGGAAAGAGAGACCAAGATGGAAATATCTCCGATTCATGGACAAGCCATATACCAGTCCTATTCTCTAAAAATCAGGGAGGCTTGCCAGACCTTAGATCCCTTGGTGCCCTCACTTACTTCATCTGTGAAGGGGCTCTATTCTGTGTTGACCAGGCTTGCACGAACTGCAAGTCTCCATGCTGGGAATCTTCATAAAGCTCTTGAAGGACTAGGAGAAAGCCAGGAAGTAGAATCGCCAGTAACTGATGTATCAAGGCCAGATCTTGCTGCTGATGCTGCTGGGTTTGATGACAAGGAGAGAGAGAACCTCTCCATGTCAAATGGTGATAGCACCAAAGATTTTGTTGGCGTTGCATTTCCTTTGGAAGATAAAGGATGGTTATGTCCACCAGATAGTATCTGTAGTAGTAGTACAGATTCTGGCATTACCTTGCCTGAAATGAGTCTTCCAGGTAGCTTCAATGATCAAGAAGATATAAAGCAACAGCTTTTGCACGGACCTAGTAGCAGAGATGCTATAGATTTTCAAAATACCGCCCCTTACTCTCAAGCTGATAGCCAAGAAATGTTGGATTCTCCATACAGATTAAAATTTACAGAAGCACCTAGTGACCTCAATGAATATCCACTGGCTCCAGCATCACCAAGTGATGAACCTGTCAGTGTCTGTCCTGATACTTCACGTCCTTCAAATGAGAACAGAGAGGTGGTGTTTGGGGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006401 GO:0006402 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019219 GO:0019222 GO:0019439 GO:0019538 GO:0019637 GO:0030258 GO:0031323 GO:0031974 GO:0031981 GO:0032204 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034655 GO:0036211 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046486 GO:0046488 GO:0046700 GO:0046777 GO:0046834 GO:0046854 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140096 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901575 GO:2001020
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
FATC PI3_PI4_kinase SMG1 WD40

Protein Analysis

361

Amino Acids

39.58

Weight (kDa)

4.91

Isoelectric Point (pI)

49.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 466
AccB7I CCANNNNNTGG 1 cut(s) 64
AciI CCGC 2 cut(s) 62, 897
AclWI GGATC 1 cut(s) 452
AcsI RAATTY 1 cut(s) 953
AcuI CTGAAG 1 cut(s) 231
AdeI CACNNNGTG 2 cut(s) 971, 1010
AfaI GTAC 2 cut(s) 47, 775
AfiI CCNNNNNNNGG 3 cut(s) 64, 286, 398
AgsI TTSAA 5 cut(s) 285, 566, 823, 890, 1053
AjiI CACGTC 1 cut(s) 1046
AjnI CCWGG 5 cut(s) 192, 235, 512, 582, 811
AluBI AGCT 5 cut(s) 338, 560, 819, 850, 914
AluI AGCT 5 cut(s) 338, 560, 819, 850, 914
Alw26I GTCTC 2 cut(s) 365, 539
AlwI GGATC 1 cut(s) 452
AlwNI CAGNNNCTG 3 cut(s) 605, 782, 1029
AoxI GGCC 1 cut(s) 617
ApeKI GCWGC 5 cut(s) 248, 251, 338, 629, 638
ApoI RAATTY 1 cut(s) 953
ArsI GACNNNNNNTTYG 2 cut(s) 517, 549
AspS9I GGNCC 2 cut(s) 196, 860
AsuHPI GGTGA 2 cut(s) 698, 996
AvaII GGWCC 2 cut(s) 196, 860
BaeGI GKGCMC 1 cut(s) 471
BaeI ACNNNNGTAYC 2 cut(s) 594, 627
BanI GGYRCC 1 cut(s) 466
BanII GRGCYC 1 cut(s) 498
BarI GAAGNNNNNNTAC 2 cut(s) 29, 61
BbsI GAAGAC 2 cut(s) 282, 800
BbvI GCAGC 5 cut(s) 235, 238, 325, 616, 625
BccI CCATC 2 cut(s) 373, 732
BciT130I CCWGG 5 cut(s) 194, 237, 514, 584, 813
BclI TGATCA 1 cut(s) 826
BcoDI GTCTC 2 cut(s) 365, 539
BfaI CTAG 3 cut(s) 572, 864, 969
BfmI CTRYAG 2 cut(s) 763, 879
BglII AGATCT 2 cut(s) 214, 622
BisI GCNGC 5 cut(s) 249, 252, 339, 630, 639
BlsI GCNGC 5 cut(s) 250, 253, 340, 631, 640
Bme1390I CCNGG 5 cut(s) 194, 237, 514, 584, 813
Bme18I GGWCC 2 cut(s) 196, 860
BmgBI CACGTC 1 cut(s) 1046
BmgT120I GGNCC 2 cut(s) 196, 860
BmiI GGNNCC 2 cut(s) 468, 996
BmrFI CCNGG 5 cut(s) 194, 237, 514, 584, 813
BmsI GCATC 4 cut(s) 175, 625, 865, 1010
BpiI GAAGAC 2 cut(s) 282, 800
BplI GAGNNNNNCTC 4 cut(s) 654, 686, 656, 688
BpmI CTGGAG 2 cut(s) 104, 981
BpuEI CTTGAG 1 cut(s) 894
BsaI GGTCTC 1 cut(s) 365
BsaJI CCNNGG 1 cut(s) 462
Bsc4I CCNNNNNNNGG 3 cut(s) 64, 286, 398
Bse1I ACTGG 4 cut(s) 121, 415, 599, 996
BseBI CCWGG 5 cut(s) 194, 237, 514, 584, 813
BseDI CCNNGG 1 cut(s) 462
BseGI GGATG 1 cut(s) 743
BseLI CCNNNNNNNGG 3 cut(s) 64, 286, 398
BseNI ACTGG 4 cut(s) 121, 415, 599, 996
BseSI GKGCMC 1 cut(s) 471
BseXI GCAGC 5 cut(s) 235, 238, 325, 616, 625
BseYI CCCAGC 2 cut(s) 542, 641
BsgI GTGCAG 1 cut(s) 185
BshFI GGCC 1 cut(s) 619
BshNI GGYRCC 1 cut(s) 466
BslI CCNNNNNNNGG 3 cut(s) 64, 286, 398
BsmAI GTCTC 2 cut(s) 365, 539
BsnI GGCC 1 cut(s) 619
Bso31I GGTCTC 1 cut(s) 365
Bsp1286I GDGCHC 2 cut(s) 471, 498
Bsp143I GATC 4 cut(s) 214, 457, 622, 826
BspACI CCGC 2 cut(s) 62, 897
BspANI GGCC 1 cut(s) 619
BspLI GGNNCC 2 cut(s) 468, 996
BspPI GGATC 1 cut(s) 452
BspT107I GGYRCC 1 cut(s) 466
BspTNI GGTCTC 1 cut(s) 365
BsrI ACTGG 4 cut(s) 121, 415, 599, 996
BssECI CCNNGG 1 cut(s) 462
BssMI GATC 4 cut(s) 214, 457, 622, 826
BssT1I CCWWGG 1 cut(s) 462
Bst2UI CCWGG 5 cut(s) 194, 237, 514, 584, 813
Bst4CI ACNGT 2 cut(s) 233, 263
BstAPI GCANNNNNTGC 1 cut(s) 527
BstC8I GCNNGC 2 cut(s) 445, 519
BstDEI CTNAG 1 cut(s) 454
BstENI CCTNNNNNAGG 1 cut(s) 284
BstF5I GGATG 1 cut(s) 743
BstKTI GATC 4 cut(s) 217, 460, 625, 829
BstMAI GTCTC 2 cut(s) 365, 539
BstMBI GATC 4 cut(s) 214, 457, 622, 826
BstMWI GCNNNNNNNGC 3 cut(s) 527, 635, 638
BstNI CCWGG 5 cut(s) 194, 237, 514, 584, 813
BstSCI CCNGG 5 cut(s) 192, 235, 512, 582, 811
BstSFI CTRYAG 2 cut(s) 763, 879
BstSLI GKGCMC 1 cut(s) 471
BstV1I GCAGC 5 cut(s) 235, 238, 325, 616, 625
BstV2I GAAGAC 2 cut(s) 282, 800
BstX2I RGATCY 3 cut(s) 214, 457, 622
BstYI RGATCY 3 cut(s) 214, 457, 622
BsuRI GGCC 1 cut(s) 619
BtrI CACGTC 1 cut(s) 1046
BtsCI GGATG 1 cut(s) 743
BtsIMutI CAGTG 3 cut(s) 259, 989, 1030
Cac8I GCNNGC 2 cut(s) 445, 519
CaiI CAGNNNCTG 3 cut(s) 605, 782, 1029
Cfr13I GGNCC 2 cut(s) 196, 860
CsiI ACCWGGT 1 cut(s) 192
Csp6I GTAC 2 cut(s) 46, 774
CviAII CATG 4 cut(s) 221, 398, 539, 676
CviQI GTAC 2 cut(s) 46, 774
DdeI CTNAG 1 cut(s) 454
DpnI GATC 4 cut(s) 216, 459, 624, 828
DpnII GATC 4 cut(s) 214, 457, 622, 826
DraI TTTAAA 1 cut(s) 108
DraIII CACNNNGTG 2 cut(s) 971, 1010
Eco130I CCWWGG 1 cut(s) 462
Eco24I GRGCYC 1 cut(s) 498
Eco31I GGTCTC 1 cut(s) 365
Eco47I GGWCC 2 cut(s) 196, 860
Eco57I CTGAAG 1 cut(s) 231
EcoNI CCTNNNNNAGG 1 cut(s) 284
EcoO109I RGGNCCY 1 cut(s) 196
EcoRII CCWGG 5 cut(s) 192, 235, 512, 582, 811
EcoT14I CCWWGG 1 cut(s) 462
EcoT38I GRGCYC 1 cut(s) 498
ErhI CCWWGG 1 cut(s) 462
FaeI CATG 4 cut(s) 224, 401, 542, 679
FatI CATG 4 cut(s) 220, 397, 538, 675
FbaI TGATCA 1 cut(s) 826
Fnu4HI GCNGC 5 cut(s) 249, 252, 339, 630, 639
FokI GGATG 1 cut(s) 750
FriOI GRGCYC 1 cut(s) 498
Fsp4HI GCNGC 5 cut(s) 249, 252, 339, 630, 639
FspBI CTAG 3 cut(s) 572, 864, 969
GluI GCNGC 5 cut(s) 249, 252, 339, 630, 639
GsaI CCCAGC 2 cut(s) 546, 645
GsuI CTGGAG 2 cut(s) 104, 981
HaeIII GGCC 1 cut(s) 619
Hin1II CATG 4 cut(s) 224, 401, 542, 679
HincII GTYRAC 1 cut(s) 510
HindII GTYRAC 1 cut(s) 510
HinfI GANTC 6 cut(s) 394, 547, 593, 779, 805, 935
HphI GGTGA 2 cut(s) 698, 996
Hpy166II GTNNAC 4 cut(s) 42, 229, 510, 749
Hpy188I TCNGA 2 cut(s) 29, 393
Hpy188III TCNNGA 4 cut(s) 311, 563, 830, 1034
Hpy8I GTNNAC 4 cut(s) 42, 229, 510, 749
HpyAV CCTTC 4 cut(s) 97, 484, 560, 1059
HpyCH4III ACNGT 2 cut(s) 233, 263
HpyCH4IV ACGT 2 cut(s) 44, 1045
HpyF10VI GCNNNNNNNGC 3 cut(s) 527, 635, 638
HpyF3I CTNAG 1 cut(s) 454
HpySE526I ACGT 2 cut(s) 44, 1045
Hsp92II CATG 4 cut(s) 224, 401, 542, 679
Ksp22I TGATCA 1 cut(s) 826
Kzo9I GATC 4 cut(s) 214, 457, 622, 826
LmnI GCTCC 1 cut(s) 1000
Lsp1109I GCAGC 5 cut(s) 235, 238, 325, 616, 625
LweI GCATC 4 cut(s) 175, 625, 865, 1010
MabI ACCWGGT 1 cut(s) 192
MaeI CTAG 3 cut(s) 572, 864, 969
MaeII ACGT 2 cut(s) 44, 1045
MaeIII GTNAC 3 cut(s) 53, 601, 971
MalI GATC 4 cut(s) 216, 459, 624, 828
MboI GATC 4 cut(s) 214, 457, 622, 826
MflI RGATCY 3 cut(s) 214, 457, 622
MhlI GDGCHC 2 cut(s) 471, 498
MluCI AATT 4 cut(s) 78, 179, 297, 953
MlyI GAGTC 1 cut(s) 814
MmeI TCCRAC 1 cut(s) 912
MnlI CCTC 8 cut(s) 94, 238, 318, 433, 481, 680, 986, 1060
MseI TTAA 2 cut(s) 107, 950
MspR9I CCNGG 5 cut(s) 194, 237, 514, 584, 813
MvaI CCWGG 5 cut(s) 194, 237, 514, 584, 813
MwoI GCNNNNNNNGC 3 cut(s) 527, 635, 638
NdeII GATC 4 cut(s) 214, 457, 622, 826
NlaIII CATG 4 cut(s) 224, 401, 542, 679
NlaIV GGNNCC 2 cut(s) 468, 996
NmuCI GTSAC 1 cut(s) 971
PfeI GAWTC 5 cut(s) 394, 547, 593, 779, 935
PflMI CCANNNNNTGG 1 cut(s) 64
PfoI TCCNGGA 1 cut(s) 235
PkrI GCNGC 5 cut(s) 250, 253, 340, 631, 640
PleI GAGTC 1 cut(s) 813
PpsI GAGTC 1 cut(s) 813
PpuMI RGGWCCY 1 cut(s) 196
Psp5II RGGWCCY 1 cut(s) 196
Psp6I CCWGG 5 cut(s) 192, 235, 512, 582, 811
PspFI CCCAGC 2 cut(s) 542, 641
PspGI CCWGG 5 cut(s) 192, 235, 512, 582, 811
PspN4I GGNNCC 2 cut(s) 468, 996
PspPI GGNCC 2 cut(s) 196, 860
PspPPI RGGWCCY 1 cut(s) 196
PstNI CAGNNNCTG 3 cut(s) 605, 782, 1029
PsuI RGATCY 3 cut(s) 214, 457, 622
RsaI GTAC 2 cut(s) 47, 775
RsaNI GTAC 2 cut(s) 46, 774
SaqAI TTAA 2 cut(s) 107, 950
SatI GCNGC 5 cut(s) 249, 252, 339, 630, 639
Sau3AI GATC 4 cut(s) 214, 457, 622, 826
Sau96I GGNCC 2 cut(s) 196, 860
SchI GAGTC 1 cut(s) 814
ScrFI CCNGG 5 cut(s) 194, 237, 514, 584, 813
SduI GDGCHC 2 cut(s) 471, 498
SexAI ACCWGGT 1 cut(s) 192
SfaNI GCATC 4 cut(s) 175, 625, 865, 1010
SfcI CTRYAG 2 cut(s) 763, 879
SinI GGWCC 2 cut(s) 196, 860
SmlI CTYRAG 1 cut(s) 909
SmoI CTYRAG 1 cut(s) 909
Sse9I AATT 4 cut(s) 78, 179, 297, 953
SsiI CCGC 2 cut(s) 62, 897
SspMI CTAG 3 cut(s) 572, 864, 969
StyD4I CCNGG 5 cut(s) 192, 235, 512, 582, 811
StyI CCWWGG 1 cut(s) 462
TaaI ACNGT 2 cut(s) 233, 263
TaiI ACGT 2 cut(s) 47, 1048
TasI AATT 4 cut(s) 78, 179, 297, 953
TatI WGTACW 1 cut(s) 773
TfiI GAWTC 5 cut(s) 394, 547, 593, 779, 935
Tru1I TTAA 2 cut(s) 107, 950
Tru9I TTAA 2 cut(s) 107, 950
TscAI CASTG 3 cut(s) 266, 996, 1030
TseFI GTSAC 1 cut(s) 971
TseI GCWGC 5 cut(s) 248, 251, 338, 629, 638
Tsp45I GTSAC 1 cut(s) 971
TspDTI ATGAA 6 cut(s) 86, 386, 471, 542, 996, 1029
TspGWI ACGGA 1 cut(s) 873
TspRI CASTG 3 cut(s) 266, 996, 1030
Van91I CCANNNNNTGG 1 cut(s) 64
VpaK11BI GGWCC 2 cut(s) 196, 860
XagI CCTNNNNNAGG 1 cut(s) 284
XapI RAATTY 1 cut(s) 953
XspI CTAG 3 cut(s) 572, 864, 969
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.