Rh6AG111600

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0001771
Physical Location & Seq
Forward (+)
16541462 .. 16565755
24294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG111600.1

Sequence Viewer

Length: 1194 bp
ATGAAGATGGTGGGGCAACATATGGCGGTGTTTGAATTTGGGATCAAAACTACAGAGGCGACAGCGATCCGATCTGCCAGCGTGGCGGTGGTCTGGTTTGCAAGCGTCAAGGCTAGCGGCATAGGGGCATGGCAACTTCGATCCAGGCCACCATACGCTTCTAATTCCCAGAGGAGAAATGTCTTTGGCCATGCCGATACCGCTGTCAATGATAGAGAGGGTATTGTTGGTCTTATCAGGGACGAGCCTGATGAAAAACTCCGGTTGAGCATCAAGCTTGCTATTATCTGTATTGATGATCAAGCTAACAAGCTGGTTGATCTCTACGTGGAATGCGAATGTCTCAGCATCACCAATGGAGTGTTGAACATGAAAAGGGCGTCACAGCATTCCAGTTTTAGAGCCATAACCACTTTGCAAACGCATCTGTCTCAAGTCCTTGCTATAACTGAAGATCTACATGATGTTCACAGTCTAGGAAAGGAGGCTGCTGCAGTTCATCGTTCTCTTGTGGAAGACCTTTCAAAGGCTCTTGAAGGACTAGGAGAAAGCCAGGAAGTAGAATCGCCAGTAACTGATGTATCAAGGCCAGATCTTGCTGCTGATGCTGCTGGGTTTGATGACAAGGAGAGAGAGAACCTCTCCATGTCAAATGGTGAGAGCACCAAAGATTTTGTTGGCATTGGACTTCCTTTGGAAGGTAAAGGATGGTTATCTCCACCAGACAGTATCTGCAGTAGTAGTACAGATTCTGGCATTACCTTGCCTGAACTGAGTCTTCCAGGTAGCTTCAATGATCAAGAAGATATAAAGCAACAGCTTTTGCACGGACCTAGTAGCAGAGATGCGATAGATTTTCAAAATACCACCCTTTACTCTCAAGCTGATAGCCAAGAAATTTTGGATTCTCCGCACATATCAAAATTTACAGACGCAGATAACACTCATATTGGTTCTTTCAAGTCAGCACCTAGTGACCTAAATGAATATCCACCGGCTCCAGCATCACCAAGTGATGAACCTAAGTTCAAACTTCAAAATGAAAATAGACGAATTCAGAAGGATCAAACCCTTTCGTCGAATGCCTCGGCTTCATCAAGCACTGATGTTGGGGTTAACCAAGCGAAAGGAGGGATAAGCTCGTCAACCTTTTTAGCTCCTGTTTTAGGCCAAGTCGTAATATGCGATATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006401 GO:0006402 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019219 GO:0019222 GO:0019439 GO:0019538 GO:0019637 GO:0030258 GO:0031323 GO:0031974 GO:0031981 GO:0032204 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034655 GO:0036211 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046486 GO:0046488 GO:0046700 GO:0046777 GO:0046834 GO:0046854 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140096 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901575 GO:2001020
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
FATC PI3_PI4_kinase SMG1 WD40

Protein Analysis

397

Amino Acids

42.77

Weight (kDa)

4.87

Isoelectric Point (pI)

51.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 26, 86, 117, 201, 911
AclWI GGATC 4 cut(s) 50, 61, 135, 1071
AcoI YGGCCR 1 cut(s) 187
AcsI RAATTY 4 cut(s) 35, 897, 923, 1053
AcuI CTGAAG 1 cut(s) 471
AcyI GRCGYC 1 cut(s) 380
AdeI CACNNNGTG 2 cut(s) 974, 1013
AfaI GTAC 1 cut(s) 745
AfiI CCNNNNNNNGG 3 cut(s) 526, 698, 1166
AgsI TTSAA 9 cut(s) 35, 367, 525, 536, 793, 860, 961, 1030, 1037
AjnI CCWGG 3 cut(s) 143, 552, 781
AluBI AGCT 8 cut(s) 277, 305, 313, 789, 820, 884, 1140, 1157
AluI AGCT 8 cut(s) 277, 305, 313, 789, 820, 884, 1140, 1157
Alw21I GWGCWC 1 cut(s) 665
Alw26I GTCTC 2 cut(s) 347, 435
AlwI GGATC 4 cut(s) 50, 61, 135, 1071
AlwNI CAGNNNCTG 3 cut(s) 575, 732, 752
AoxI GGCC 4 cut(s) 146, 187, 587, 1168
ApeKI GCWGC 4 cut(s) 488, 491, 599, 608
ApoI RAATTY 4 cut(s) 35, 897, 923, 1053
AspS9I GGNCC 1 cut(s) 830
AsuHPI GGTGA 3 cut(s) 343, 668, 999
AsuNHI GCTAGC 1 cut(s) 113
AvaII GGWCC 1 cut(s) 830
BaeI ACNNNNGTAYC 4 cut(s) 189, 222, 564, 597
BalI TGGCCA 1 cut(s) 189
BbsI GAAGAC 2 cut(s) 522, 770
Bbv12I GWGCWC 1 cut(s) 665
BbvI GCAGC 4 cut(s) 475, 478, 586, 595
BccI CCATC 1 cut(s) 702
BciT130I CCWGG 3 cut(s) 145, 554, 783
BclI TGATCA 2 cut(s) 298, 796
BcoDI GTCTC 2 cut(s) 347, 435
BfaI CTAG 5 cut(s) 114, 476, 542, 834, 972
BfmI CTRYAG 3 cut(s) 51, 492, 733
BglI GCCNNNNNGGC 1 cut(s) 83
BglII AGATCT 2 cut(s) 454, 592
BisI GCNGC 5 cut(s) 118, 489, 492, 600, 609
BlsI GCNGC 5 cut(s) 119, 490, 493, 601, 610
Bme1390I CCNGG 3 cut(s) 145, 554, 783
Bme18I GGWCC 1 cut(s) 830
BmgT120I GGNCC 1 cut(s) 830
BmiI GGNNCC 1 cut(s) 999
BmrFI CCNGG 3 cut(s) 145, 554, 783
BmsI GCATC 6 cut(s) 279, 357, 433, 595, 835, 1013
BmtI GCTAGC 1 cut(s) 117
BpiI GAAGAC 2 cut(s) 522, 770
BplI GAGNNNNNCTC 4 cut(s) 624, 656, 626, 658
BpmI CTGGAG 1 cut(s) 984
BpuEI CTTGAG 2 cut(s) 417, 864
BsaAI YACGTR 1 cut(s) 328
BsaBI GATNNNNATC 1 cut(s) 712
BsaHI GRCGYC 1 cut(s) 380
BsaJI CCNNGG 1 cut(s) 1086
BsaWI WCCGGW 1 cut(s) 261
Bsc4I CCNNNNNNNGG 3 cut(s) 526, 698, 1166
Bse118I RCCGGY 1 cut(s) 994
Bse1I ACTGG 2 cut(s) 393, 569
Bse8I GATNNNNATC 1 cut(s) 712
BseBI CCWGG 3 cut(s) 145, 554, 783
BseDI CCNNGG 1 cut(s) 1086
BseGI GGATG 1 cut(s) 713
BseJI GATNNNNATC 1 cut(s) 712
BseLI CCNNNNNNNGG 3 cut(s) 526, 698, 1166
BseMII CTCAG 2 cut(s) 358, 764
BseNI ACTGG 2 cut(s) 393, 569
BseRI GAGGAG 1 cut(s) 187
BseXI GCAGC 4 cut(s) 475, 478, 586, 595
BseYI CCCAGC 1 cut(s) 611
BshFI GGCC 4 cut(s) 148, 189, 589, 1170
BsiHKAI GWGCWC 1 cut(s) 665
BsiSI CCGG 2 cut(s) 262, 995
BslFI GGGAC 1 cut(s) 254
BslI CCNNNNNNNGG 3 cut(s) 526, 698, 1166
BsmAI GTCTC 2 cut(s) 347, 435
BsmFI GGGAC 1 cut(s) 254
BsmI GAATGC 3 cut(s) 338, 388, 1087
BsnI GGCC 4 cut(s) 148, 189, 589, 1170
Bsp1286I GDGCHC 1 cut(s) 665
BspACI CCGC 5 cut(s) 26, 86, 117, 201, 911
BspANI GGCC 4 cut(s) 148, 189, 589, 1170
BspCNI CTCAG 2 cut(s) 357, 765
BspLI GGNNCC 1 cut(s) 999
BspMAI CTGCAG 2 cut(s) 496, 737
BspOI GCTAGC 1 cut(s) 117
BspPI GGATC 4 cut(s) 50, 61, 135, 1071
BsrFI RCCGGY 1 cut(s) 994
BsrI ACTGG 2 cut(s) 393, 569
BssAI RCCGGY 1 cut(s) 994
BssECI CCNNGG 1 cut(s) 1086
BssNI GRCGYC 1 cut(s) 380
Bst2UI CCWGG 3 cut(s) 145, 554, 783
Bst4CI ACNGT 2 cut(s) 473, 728
BstACI GRCGYC 1 cut(s) 380
BstBAI YACGTR 1 cut(s) 328
BstC8I GCNNGC 4 cut(s) 79, 103, 115, 279
BstDEI CTNAG 3 cut(s) 344, 773, 1023
BstENI CCTNNNNNAGG 3 cut(s) 524, 696, 1164
BstF5I GGATG 1 cut(s) 713
BstMAI GTCTC 2 cut(s) 347, 435
BstMWI GCNNNNNNNGC 4 cut(s) 83, 200, 605, 608
BstNI CCWGG 3 cut(s) 145, 554, 783
BstSCI CCNGG 3 cut(s) 143, 552, 781
BstSFI CTRYAG 3 cut(s) 51, 492, 733
BstV1I GCAGC 4 cut(s) 475, 478, 586, 595
BstV2I GAAGAC 2 cut(s) 522, 770
BstX2I RGATCY 2 cut(s) 454, 592
BstYI RGATCY 2 cut(s) 454, 592
BsuRI GGCC 4 cut(s) 148, 189, 589, 1170
BtsCI GGATG 1 cut(s) 713
BtsIMutI CAGTG 1 cut(s) 1101
Cac8I GCNNGC 4 cut(s) 79, 103, 115, 279
CaiI CAGNNNCTG 3 cut(s) 575, 732, 752
Cfr10I RCCGGY 1 cut(s) 994
Cfr13I GGNCC 1 cut(s) 830
CseI GACGC 3 cut(s) 94, 369, 941
Csp6I GTAC 1 cut(s) 744
CviAII CATG 5 cut(s) 129, 191, 370, 461, 646
CviQI GTAC 1 cut(s) 744
DdeI CTNAG 3 cut(s) 344, 773, 1023
DraIII CACNNNGTG 2 cut(s) 974, 1013
EaeI YGGCCR 1 cut(s) 187
Eco47I GGWCC 1 cut(s) 830
Eco57I CTGAAG 1 cut(s) 471
EcoNI CCTNNNNNAGG 3 cut(s) 524, 696, 1164
EcoRI GAATTC 1 cut(s) 1053
EcoRII CCWGG 3 cut(s) 143, 552, 781
FaeI CATG 5 cut(s) 132, 194, 373, 464, 649
FaqI GGGAC 1 cut(s) 254
FatI CATG 5 cut(s) 128, 190, 369, 460, 645
FauNDI CATATG 1 cut(s) 21
FbaI TGATCA 2 cut(s) 298, 796
Fnu4HI GCNGC 5 cut(s) 118, 489, 492, 600, 609
FokI GGATG 1 cut(s) 720
Fsp4HI GCNGC 5 cut(s) 118, 489, 492, 600, 609
FspBI CTAG 5 cut(s) 114, 476, 542, 834, 972
GluI GCNGC 5 cut(s) 118, 489, 492, 600, 609
GsaI CCCAGC 1 cut(s) 615
GsuI CTGGAG 1 cut(s) 984
HaeIII GGCC 4 cut(s) 148, 189, 589, 1170
HapII CCGG 2 cut(s) 262, 995
HgaI GACGC 3 cut(s) 94, 369, 941
Hin1I GRCGYC 1 cut(s) 380
Hin1II CATG 5 cut(s) 132, 194, 373, 464, 649
HincII GTYRAC 2 cut(s) 1117, 1146
HindII GTYRAC 2 cut(s) 1117, 1146
HindIII AAGCTT 1 cut(s) 275
HinfI GANTC 4 cut(s) 563, 749, 775, 905
HpaI GTTAAC 1 cut(s) 1117
HpaII CCGG 2 cut(s) 262, 995
HphI GGTGA 3 cut(s) 343, 668, 999
Hpy166II GTNNAC 3 cut(s) 469, 1117, 1146
Hpy188I TCNGA 2 cut(s) 71, 1059
Hpy188III TCNNGA 2 cut(s) 533, 800
Hpy8I GTNNAC 3 cut(s) 469, 1117, 1146
Hpy99I CGWCG 1 cut(s) 1081
HpyAV CCTTC 3 cut(s) 530, 692, 1054
HpyCH4III ACNGT 2 cut(s) 473, 728
HpyCH4IV ACGT 1 cut(s) 327
HpyCH4V TGCA 5 cut(s) 101, 418, 494, 735, 826
HpyF10VI GCNNNNNNNGC 4 cut(s) 83, 200, 605, 608
HpyF3I CTNAG 3 cut(s) 344, 773, 1023
HpySE526I ACGT 1 cut(s) 327
Hsp92I GRCGYC 1 cut(s) 380
Hsp92II CATG 5 cut(s) 132, 194, 373, 464, 649
Ksp22I TGATCA 2 cut(s) 298, 796
KspAI GTTAAC 1 cut(s) 1117
LmnI GCTCC 2 cut(s) 1003, 1162
Lsp1109I GCAGC 4 cut(s) 475, 478, 586, 595
LweI GCATC 6 cut(s) 279, 357, 433, 595, 835, 1013
MaeI CTAG 5 cut(s) 114, 476, 542, 834, 972
MaeII ACGT 1 cut(s) 327
MaeIII GTNAC 3 cut(s) 381, 571, 974
MboII GAAGA 5 cut(s) 16, 464, 527, 770, 815
MflI RGATCY 2 cut(s) 454, 592
MhlI GDGCHC 1 cut(s) 665
MlsI TGGCCA 1 cut(s) 189
MluCI AATT 5 cut(s) 35, 163, 897, 923, 1053
MluNI TGGCCA 1 cut(s) 189
MlyI GAGTC 1 cut(s) 784
MnlI CCTC 7 cut(s) 49, 165, 211, 478, 650, 1096, 1124
Mox20I TGGCCA 1 cut(s) 189
MscI TGGCCA 1 cut(s) 189
MseI TTAA 1 cut(s) 1116
Msp20I TGGCCA 1 cut(s) 189
MspA1I CMGCKG 1 cut(s) 203
MspI CCGG 2 cut(s) 262, 995
MspR9I CCNGG 3 cut(s) 145, 554, 783
Mva1269I GAATGC 3 cut(s) 338, 388, 1087
MvaI CCWGG 3 cut(s) 145, 554, 783
MwoI GCNNNNNNNGC 4 cut(s) 83, 200, 605, 608
NdeI CATATG 1 cut(s) 21
NheI GCTAGC 1 cut(s) 113
NlaIII CATG 5 cut(s) 132, 194, 373, 464, 649
NlaIV GGNNCC 1 cut(s) 999
NmeAIII GCCGAG 1 cut(s) 1067
NmuCI GTSAC 2 cut(s) 381, 974
PcsI WCGNNNNNNNCGW 2 cut(s) 333, 1182
PctI GAATGC 3 cut(s) 338, 388, 1087
PfeI GAWTC 3 cut(s) 563, 749, 905
PkrI GCNGC 5 cut(s) 119, 490, 493, 601, 610
PleI GAGTC 1 cut(s) 783
PpsI GAGTC 1 cut(s) 783
Ppu21I YACGTR 1 cut(s) 328
Psp6I CCWGG 3 cut(s) 143, 552, 781
PspFI CCCAGC 1 cut(s) 611
PspGI CCWGG 3 cut(s) 143, 552, 781
PspN4I GGNNCC 1 cut(s) 999
PspPI GGNCC 1 cut(s) 830
PstI CTGCAG 2 cut(s) 496, 737
PstNI CAGNNNCTG 3 cut(s) 575, 732, 752
PsuI RGATCY 2 cut(s) 454, 592
RsaI GTAC 1 cut(s) 745
RsaNI GTAC 1 cut(s) 744
SaqAI TTAA 1 cut(s) 1116
SatI GCNGC 5 cut(s) 118, 489, 492, 600, 609
Sau96I GGNCC 1 cut(s) 830
SchI GAGTC 1 cut(s) 784
ScrFI CCNGG 3 cut(s) 145, 554, 783
SduI GDGCHC 1 cut(s) 665
SfaNI GCATC 6 cut(s) 279, 357, 433, 595, 835, 1013
SfcI CTRYAG 3 cut(s) 51, 492, 733
SinI GGWCC 1 cut(s) 830
SmlI CTYRAG 2 cut(s) 432, 879
SmoI CTYRAG 2 cut(s) 432, 879
Sse9I AATT 5 cut(s) 35, 163, 897, 923, 1053
SsiI CCGC 5 cut(s) 26, 86, 117, 201, 911
SspMI CTAG 5 cut(s) 114, 476, 542, 834, 972
StyD4I CCNGG 3 cut(s) 143, 552, 781
TaaI ACNGT 2 cut(s) 473, 728
TaiI ACGT 1 cut(s) 330
TaqI TCGA 2 cut(s) 139, 1079
TasI AATT 5 cut(s) 35, 163, 897, 923, 1053
TatI WGTACW 1 cut(s) 743
TauI GCSGC 1 cut(s) 120
TfiI GAWTC 3 cut(s) 563, 749, 905
Tru1I TTAA 1 cut(s) 1116
Tru9I TTAA 1 cut(s) 1116
TscAI CASTG 1 cut(s) 1108
TseFI GTSAC 2 cut(s) 381, 974
TseI GCWGC 4 cut(s) 488, 491, 599, 608
Tsp45I GTSAC 2 cut(s) 381, 974
TspDTI ATGAA 8 cut(s) 17, 267, 386, 488, 999, 1032, 1056, 1083
TspGWI ACGGA 1 cut(s) 843
TspRI CASTG 1 cut(s) 1108
VpaK11BI GGWCC 1 cut(s) 830
XagI CCTNNNNNAGG 3 cut(s) 524, 696, 1164
XapI RAATTY 4 cut(s) 35, 897, 923, 1053
XcmI CCANNNNNNNNNTGG 1 cut(s) 85
XspI CTAG 5 cut(s) 114, 476, 542, 834, 972
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.