Rw6G009400

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0001771
Physical Location & Seq
Forward (+)
15697917 .. 15699145
1229 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G009400.1

Sequence Viewer

Length: 549 bp
ATGCTGGCTCTTGAAGGACTAGGAGAAAGCCAGGAAGTAGAATTGCTAGAAACTGATGTATCAAGGCCAGATCTTGCTGCTGATGATGCTGGATTTGATGACAAGGAGAGAGGGAACCTCTCCGTGTCAAATGGTGAGAGCACCAAAGATTTCGTTGGCGTTGGACTTCCTATGGAAAATAAAGGATGGTTATCGCCACCAGATAGTATCTGCAGTAGTAGTACAGATTCTGGCATTACACTGGCTGAAATGAGTCTTCCAGGTAGCTTCAATGATGAATTAGATATAAAGCAACAGCTTTTGCATGGACCTAGTAGCAGAGATGCTATAGATTTTCCAAATACCACCCCTTACTCTCAAGCTGATAGCCAAGAAATGTTGGATTCTCCGCACAGATCAAAATTTACAGAAGCAGATAACACTCATATTGGTTCTTTCAAGTCAACATCTAATGAATATCCACTGGCTCCAACATCACCAATGGCAAAGATGATTATGGAGTATTGGATGGCATCAAGTGCTAAACCAGTAAGCGGATTACGAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006401 GO:0006402 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019219 GO:0019222 GO:0019439 GO:0019538 GO:0019637 GO:0030258 GO:0031323 GO:0031974 GO:0031981 GO:0032204 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034655 GO:0036211 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046486 GO:0046488 GO:0046700 GO:0046777 GO:0046834 GO:0046854 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140096 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901575 GO:2001020
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
FATC PI3_PI4_kinase SMG1 WD40

Protein Analysis

182

Amino Acids

19.67

Weight (kDa)

4.29

Isoelectric Point (pI)

51.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 389, 534
AcsI RAATTY 1 cut(s) 401
AfaI GTAC 1 cut(s) 223
AfiI CCNNNNNNNGG 1 cut(s) 533
AgsI TTSAA 3 cut(s) 14, 271, 439
AjnI CCWGG 2 cut(s) 30, 259
AluBI AGCT 3 cut(s) 267, 298, 362
AluI AGCT 3 cut(s) 267, 298, 362
Alw21I GWGCWC 1 cut(s) 143
AlwNI CAGNNNCTG 1 cut(s) 230
AoxI GGCC 1 cut(s) 65
ApeKI GCWGC 1 cut(s) 77
ApoI RAATTY 1 cut(s) 401
AspS9I GGNCC 1 cut(s) 308
AsuHPI GGTGA 2 cut(s) 146, 468
AvaII GGWCC 1 cut(s) 308
BaeI ACNNNNGTAYC 2 cut(s) 42, 75
BbsI GAAGAC 1 cut(s) 248
Bbv12I GWGCWC 1 cut(s) 143
BbvI GCAGC 1 cut(s) 64
BccI CCATC 2 cut(s) 180, 502
BciT130I CCWGG 2 cut(s) 32, 261
BfaI CTAG 3 cut(s) 20, 47, 312
BfmI CTRYAG 2 cut(s) 211, 327
BglII AGATCT 1 cut(s) 70
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
Bme1390I CCNGG 2 cut(s) 32, 261
Bme18I GGWCC 1 cut(s) 308
BmgT120I GGNCC 1 cut(s) 308
BmiI GGNNCC 2 cut(s) 116, 468
BmrFI CCNGG 2 cut(s) 32, 261
BmsI GCATC 3 cut(s) 76, 313, 521
BpiI GAAGAC 1 cut(s) 248
BplI GAGNNNNNCTC 2 cut(s) 102, 134
BpuEI CTTGAG 1 cut(s) 342
BsaBI GATNNNNATC 1 cut(s) 190
Bsc4I CCNNNNNNNGG 1 cut(s) 533
Bse1I ACTGG 3 cut(s) 246, 468, 527
Bse8I GATNNNNATC 1 cut(s) 190
BseBI CCWGG 2 cut(s) 32, 261
BseGI GGATG 2 cut(s) 191, 513
BseJI GATNNNNATC 1 cut(s) 190
BseLI CCNNNNNNNGG 1 cut(s) 533
BseNI ACTGG 3 cut(s) 246, 468, 527
BseXI GCAGC 1 cut(s) 64
BshFI GGCC 1 cut(s) 67
BsiHKAI GWGCWC 1 cut(s) 143
BslI CCNNNNNNNGG 1 cut(s) 533
BsnI GGCC 1 cut(s) 67
Bsp1286I GDGCHC 1 cut(s) 143
Bsp143I GATC 2 cut(s) 70, 395
BspACI CCGC 2 cut(s) 389, 534
BspANI GGCC 1 cut(s) 67
BspLI GGNNCC 2 cut(s) 116, 468
BspMAI CTGCAG 1 cut(s) 215
BsrI ACTGG 3 cut(s) 246, 468, 527
BssMI GATC 2 cut(s) 70, 395
Bst2UI CCWGG 2 cut(s) 32, 261
BstAPI GCANNNNNTGC 1 cut(s) 518
BstC8I GCNNGC 1 cut(s) 6
BstF5I GGATG 2 cut(s) 191, 513
BstKTI GATC 2 cut(s) 73, 398
BstMBI GATC 2 cut(s) 70, 395
BstMWI GCNNNNNNNGC 2 cut(s) 86, 518
BstNI CCWGG 2 cut(s) 32, 261
BstSCI CCNGG 2 cut(s) 30, 259
BstSFI CTRYAG 2 cut(s) 211, 327
BstV1I GCAGC 1 cut(s) 64
BstV2I GAAGAC 1 cut(s) 248
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
BsuRI GGCC 1 cut(s) 67
BtsCI GGATG 2 cut(s) 191, 513
BtsIMutI CAGTG 2 cut(s) 239, 461
Cac8I GCNNGC 1 cut(s) 6
CaiI CAGNNNCTG 1 cut(s) 230
Cfr13I GGNCC 1 cut(s) 308
Csp6I GTAC 1 cut(s) 222
CviAII CATG 1 cut(s) 305
CviJI RGCY 9 cut(s) 8, 30, 67, 245, 267, 298, 362, 369, 467
CviKI_1 RGCY 9 cut(s) 8, 30, 67, 245, 267, 298, 362, 369, 467
CviQI GTAC 1 cut(s) 222
DpnI GATC 2 cut(s) 72, 397
DpnII GATC 2 cut(s) 70, 395
Eco47I GGWCC 1 cut(s) 308
EcoRII CCWGG 2 cut(s) 30, 259
FaeI CATG 1 cut(s) 308
FaiI YATR 6 cut(s) 173, 287, 306, 329, 426, 497
FatI CATG 1 cut(s) 304
Fnu4HI GCNGC 1 cut(s) 78
FokI GGATG 2 cut(s) 198, 520
Fsp4HI GCNGC 1 cut(s) 78
FspBI CTAG 3 cut(s) 20, 47, 312
GluI GCNGC 1 cut(s) 78
HaeIII GGCC 1 cut(s) 67
Hin1II CATG 1 cut(s) 308
HincII GTYRAC 1 cut(s) 444
HindII GTYRAC 1 cut(s) 444
HinfI GANTC 3 cut(s) 227, 253, 383
HphI GGTGA 2 cut(s) 146, 468
Hpy166II GTNNAC 1 cut(s) 444
Hpy188III TCNNGA 1 cut(s) 11
Hpy8I GTNNAC 1 cut(s) 444
HpyAV CCTTC 1 cut(s) 8
HpyCH4V TGCA 2 cut(s) 213, 304
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 518
Hsp92II CATG 1 cut(s) 308
Kzo9I GATC 2 cut(s) 70, 395
LmnI GCTCC 1 cut(s) 472
Lsp1109I GCAGC 1 cut(s) 64
LweI GCATC 3 cut(s) 76, 313, 521
MaeI CTAG 3 cut(s) 20, 47, 312
MalI GATC 2 cut(s) 72, 397
MboI GATC 2 cut(s) 70, 395
MboII GAAGA 1 cut(s) 248
MflI RGATCY 1 cut(s) 70
MhlI GDGCHC 1 cut(s) 143
MluCI AATT 3 cut(s) 41, 278, 401
MlyI GAGTC 1 cut(s) 262
MmeI TCCRAC 3 cut(s) 142, 360, 494
MnlI CCTC 2 cut(s) 104, 128
MseI TTAA 1 cut(s) 547
MspR9I CCNGG 2 cut(s) 32, 261
MvaI CCWGG 2 cut(s) 32, 261
MwoI GCNNNNNNNGC 2 cut(s) 86, 518
NdeII GATC 2 cut(s) 70, 395
NlaIII CATG 1 cut(s) 308
NlaIV GGNNCC 2 cut(s) 116, 468
PfeI GAWTC 2 cut(s) 227, 383
PkrI GCNGC 1 cut(s) 79
PleI GAGTC 1 cut(s) 261
PpsI GAGTC 1 cut(s) 261
Psp6I CCWGG 2 cut(s) 30, 259
PspGI CCWGG 2 cut(s) 30, 259
PspN4I GGNNCC 2 cut(s) 116, 468
PspPI GGNCC 1 cut(s) 308
PstI CTGCAG 1 cut(s) 215
PstNI CAGNNNCTG 1 cut(s) 230
PsuI RGATCY 1 cut(s) 70
RsaI GTAC 1 cut(s) 223
RsaNI GTAC 1 cut(s) 222
SaqAI TTAA 1 cut(s) 547
SatI GCNGC 1 cut(s) 78
Sau3AI GATC 2 cut(s) 70, 395
Sau96I GGNCC 1 cut(s) 308
SchI GAGTC 1 cut(s) 262
ScrFI CCNGG 2 cut(s) 32, 261
SduI GDGCHC 1 cut(s) 143
SetI ASST 6 cut(s) 120, 265, 269, 300, 313, 364
SfaNI GCATC 3 cut(s) 76, 313, 521
SfcI CTRYAG 2 cut(s) 211, 327
SinI GGWCC 1 cut(s) 308
SmlI CTYRAG 1 cut(s) 357
SmoI CTYRAG 1 cut(s) 357
Sse9I AATT 3 cut(s) 41, 278, 401
SsiI CCGC 2 cut(s) 389, 534
SspMI CTAG 3 cut(s) 20, 47, 312
StyD4I CCNGG 2 cut(s) 30, 259
TasI AATT 3 cut(s) 41, 278, 401
TatI WGTACW 1 cut(s) 221
TfiI GAWTC 2 cut(s) 227, 383
Tru1I TTAA 1 cut(s) 547
Tru9I TTAA 1 cut(s) 547
TscAI CASTG 2 cut(s) 246, 468
TseI GCWGC 1 cut(s) 77
TspDTI ATGAA 2 cut(s) 291, 468
TspGWI ACGGA 1 cut(s) 112
TspRI CASTG 2 cut(s) 246, 468
VpaK11BI GGWCC 1 cut(s) 308
XapI RAATTY 1 cut(s) 401
XspI CTAG 3 cut(s) 20, 47, 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.