RchiOBHm_Chr6g0260571

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0001771
Physical Location & Seq
Reverse (-)
15557695 .. 15559139
1445 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23368

Sequence Viewer

Length: 1023 bp
ATGCTGCTAGTGTTTGGTTACTGTGAAATTGGAACTATATGTTATGGGGTGAGGCAAGAGGCTGCGGTGGCATATGGTGCTCTTTGTGATGTGGTTTGCTCAATTCCTATAACTTCAAATGGAAGACAGAACCATGTTATGCTTGGGAGCTTGGTTGACCGCTTCATTGGTTGGGCGCTGCCGTTGCTTAGCAATATCAGCGCCAGAGATGGGACCGCGGAATTGGCATTGGACGTCGTGCAAGAGTATCTTAACGTTGGGGATGTTGGTGGGATCGAGAAATATGCTTTGTCGATTCTTAAAGTGTGCCAATTTCTTGTTGAGGTAGAGAACCTCCTTGAGTCTGTTGCACCGCCTTCTCGGTATGCAAGTCATGGAACCCTGCAACACTTCCGAATGCTGCTCGCGTTACTTTCGTGCTTTTCAACAGTATTGCAGTCCACTGCTTCTGGATCCATTCTTTCCCTCCTCCACCTATCCCCGTTCTTTCCCTTTCTTGTAGACGAAAACCAGTCCAGTAACAGTAGGATGTCTGGACTCATTACATGGGTTACTGGGCTTGTGTATCAGGCCGAAGGTAAATATGAAAAGGCTGCTGCTCACTTTACTTGCTACAGACTGAGGAGTCATTGGGTTCCTTGGGTTCTGATGGTGTACAATTTGCCATTGCATGTATCATCGAGTACACTACATGCCAAGCATGCTGGGAAGAGTTATTGTGGTGCGCTAACGACAACTGGCAATGAAATTAATGCAATTCATGCCTTGGCACAGTATGATGAGGGTGAATATCAGGCAGCATGGGCATGCCTTGGTTTGACACCTAAAAGTAGCAGTGAGCTCGCACTTGATCCCAAATTGGCCTTGCAAAGAAGTGAGCATATGCTCTTACAGGCAATGCTTTTTCAGAATGGTGAAAAGGAAGATGAGGTGCCACATGAGTTGGAGAAGGCCAGGTCAATGTTGGAGGAAACATTGTCTGTTCTGCCGCTAGTCGCTAGATGGGCTAGAAGAGGCGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006401 GO:0006402 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019219 GO:0019222 GO:0019439 GO:0019538 GO:0019637 GO:0030258 GO:0031323 GO:0031974 GO:0031981 GO:0032204 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034655 GO:0036211 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046486 GO:0046488 GO:0046700 GO:0046777 GO:0046834 GO:0046854 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140096 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901575 GO:2001020
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
FATC PI3_PI4_kinase SMG1 WD40

Protein Analysis

340

Amino Acids

37.36

Weight (kDa)

5.83

Isoelectric Point (pI)

40.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 624
AatII GACGTC 1 cut(s) 237
AccB1I GGYRCC 1 cut(s) 931
AccI GTMKAC 1 cut(s) 501
AccII CGCG 2 cut(s) 218, 407
AciI CCGC 7 cut(s) 65, 160, 216, 218, 353, 989, 1017
AclI AACGTT 1 cut(s) 255
AclWI GGATC 4 cut(s) 281, 447, 460, 845
AcyI GRCGYC 1 cut(s) 234
AfaI GTAC 2 cut(s) 656, 685
AfiI CCNNNNNNNGG 1 cut(s) 210
AgsI TTSAA 2 cut(s) 117, 426
AjnI CCWGG 1 cut(s) 953
AluBI AGCT 2 cut(s) 150, 841
AluI AGCT 2 cut(s) 150, 841
Alw21I GWGCWC 2 cut(s) 82, 843
AlwI GGATC 4 cut(s) 281, 447, 460, 845
AoxI GGCC 3 cut(s) 570, 861, 951
ApeKI GCWGC 7 cut(s) 4, 62, 178, 400, 593, 596, 797
AseI ATTAAT 1 cut(s) 750
AspLEI GCGC 3 cut(s) 178, 203, 727
AspS9I GGNCC 1 cut(s) 213
AsuHPI GGTGA 3 cut(s) 61, 797, 926
AvaII GGWCC 1 cut(s) 213
BamHI GGATCC 1 cut(s) 452
BanI GGYRCC 1 cut(s) 931
BanII GRGCYC 1 cut(s) 843
BbsI GAAGAC 1 cut(s) 130
Bbv12I GWGCWC 2 cut(s) 82, 843
BbvI GCAGC 6 cut(s) 49, 165, 387, 580, 583, 809
BccI CCATC 3 cut(s) 203, 643, 996
BceAI ACGGC 1 cut(s) 166
BcgI CGANNNNNNTGC 4 cut(s) 266, 300, 823, 857
BciT130I CCWGG 1 cut(s) 955
BfaI CTAG 4 cut(s) 8, 992, 999, 1008
BfmI CTRYAG 1 cut(s) 613
BfoI RGCGCY 2 cut(s) 179, 204
BisI GCNGC 8 cut(s) 5, 63, 179, 401, 594, 597, 798, 989
BlpI GCTNAGC 1 cut(s) 188
BlsI GCNGC 8 cut(s) 6, 64, 180, 402, 595, 598, 799, 990
Bme1390I CCNGG 1 cut(s) 955
Bme18I GGWCC 1 cut(s) 213
BmgT120I GGNCC 1 cut(s) 213
BmiI GGNNCC 5 cut(s) 214, 379, 454, 636, 933
BmrFI CCNGG 1 cut(s) 955
BmrI ACTGGG 1 cut(s) 564
BmuI ACTGGG 1 cut(s) 564
BpiI GAAGAC 1 cut(s) 130
Bpu1102I GCTNAGC 1 cut(s) 188
BpuEI CTTGAG 1 cut(s) 359
BsaHI GRCGYC 1 cut(s) 234
BsaJI CCNNGG 4 cut(s) 216, 638, 765, 811
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse1I ACTGG 4 cut(s) 511, 516, 559, 742
Bse3DI GCAATG 3 cut(s) 665, 748, 903
BseBI CCWGG 1 cut(s) 955
BseDI CCNNGG 4 cut(s) 216, 638, 765, 811
BseGI GGATG 2 cut(s) 268, 534
BseLI CCNNNNNNNGG 1 cut(s) 210
BseMI GCAATG 3 cut(s) 665, 748, 903
BseMII CTCAG 1 cut(s) 611
BseNI ACTGG 4 cut(s) 511, 516, 559, 742
BseRI GAGGAG 2 cut(s) 458, 637
BseXI GCAGC 6 cut(s) 49, 165, 387, 580, 583, 809
BseYI CCCAGC 1 cut(s) 704
Bsh1236I CGCG 2 cut(s) 218, 407
BshFI GGCC 3 cut(s) 572, 863, 953
BshNI GGYRCC 1 cut(s) 931
BsiHKAI GWGCWC 2 cut(s) 82, 843
BslFI GGGAC 1 cut(s) 226
BslI CCNNNNNNNGG 1 cut(s) 210
BsmFI GGGAC 1 cut(s) 226
BsmI GAATGC 1 cut(s) 402
BsnI GGCC 3 cut(s) 572, 863, 953
Bsp1286I GDGCHC 2 cut(s) 82, 843
Bsp1407I TGTACA 1 cut(s) 654
Bsp143I GATC 3 cut(s) 273, 452, 850
Bsp1720I GCTNAGC 1 cut(s) 188
BspACI CCGC 7 cut(s) 65, 160, 216, 218, 353, 989, 1017
BspANI GGCC 3 cut(s) 572, 863, 953
BspCNI CTCAG 1 cut(s) 612
BspFNI CGCG 2 cut(s) 218, 407
BspLI GGNNCC 5 cut(s) 214, 379, 454, 636, 933
BspPI GGATC 4 cut(s) 281, 447, 460, 845
BspT107I GGYRCC 1 cut(s) 931
BsrDI GCAATG 3 cut(s) 665, 748, 903
BsrGI TGTACA 1 cut(s) 654
BsrI ACTGG 4 cut(s) 511, 516, 559, 742
BssECI CCNNGG 4 cut(s) 216, 638, 765, 811
BssMI GATC 3 cut(s) 273, 452, 850
BssNI GRCGYC 1 cut(s) 234
BssT1I CCWWGG 3 cut(s) 638, 765, 811
Bst2UI CCWGG 1 cut(s) 955
Bst4CI ACNGT 4 cut(s) 23, 430, 524, 774
Bst6I CTCTTC 2 cut(s) 704, 1006
BstACI GRCGYC 1 cut(s) 234
BstAPI GCANNNNNTGC 2 cut(s) 77, 761
BstAUI TGTACA 1 cut(s) 654
BstC8I GCNNGC 4 cut(s) 405, 702, 808, 843
BstDEI CTNAG 2 cut(s) 188, 620
BstDSI CCRYGG 1 cut(s) 216
BstF5I GGATG 2 cut(s) 268, 534
BstFNI CGCG 2 cut(s) 218, 407
BstH2I RGCGCY 2 cut(s) 179, 204
BstHHI GCGC 3 cut(s) 178, 203, 727
BstKTI GATC 3 cut(s) 276, 455, 853
BstMBI GATC 3 cut(s) 273, 452, 850
BstMWI GCNNNNNNNGC 9 cut(s) 68, 77, 184, 198, 224, 701, 761, 803, 1004
BstNI CCWGG 1 cut(s) 955
BstNSI RCATGY 4 cut(s) 674, 695, 704, 810
BstSCI CCNGG 1 cut(s) 953
BstSFI CTRYAG 1 cut(s) 613
BstUI CGCG 2 cut(s) 218, 407
BstV1I GCAGC 6 cut(s) 49, 165, 387, 580, 583, 809
BstV2I GAAGAC 1 cut(s) 130
BstX2I RGATCY 1 cut(s) 452
BstYI RGATCY 1 cut(s) 452
BsuRI GGCC 3 cut(s) 572, 863, 953
BtgI CCRYGG 1 cut(s) 216
BtsCI GGATG 2 cut(s) 268, 534
BtsI GCAGTG 2 cut(s) 441, 841
BtsIMutI CAGTG 2 cut(s) 441, 841
Cac8I GCNNGC 4 cut(s) 405, 702, 808, 843
CfoI GCGC 3 cut(s) 178, 203, 727
Cfr13I GGNCC 1 cut(s) 213
Cfr42I CCGCGG 1 cut(s) 219
Csp6I GTAC 2 cut(s) 655, 684
CspCI CAANNNNNGTGG 2 cut(s) 924, 959
CviJI RGCY 9 cut(s) 62, 150, 559, 572, 593, 841, 863, 953, 1007
CviKI_1 RGCY 9 cut(s) 62, 150, 559, 572, 593, 841, 863, 953, 1007
CviQI GTAC 2 cut(s) 655, 684
DdeI CTNAG 2 cut(s) 188, 620
DpnI GATC 3 cut(s) 275, 454, 852
DpnII GATC 3 cut(s) 273, 452, 850
DrdI GACNNNNNNGTC 1 cut(s) 624
DseDI GACNNNNNNGTC 1 cut(s) 624
Eam1104I CTCTTC 2 cut(s) 704, 1006
EarI CTCTTC 2 cut(s) 704, 1006
Ecl136II GAGCTC 1 cut(s) 841
Eco130I CCWWGG 3 cut(s) 638, 765, 811
Eco24I GRGCYC 1 cut(s) 843
Eco47I GGWCC 1 cut(s) 213
Eco53kI GAGCTC 1 cut(s) 841
EcoICRI GAGCTC 1 cut(s) 841
EcoRII CCWGG 1 cut(s) 953
EcoT14I CCWWGG 3 cut(s) 638, 765, 811
EcoT38I GRGCYC 1 cut(s) 843
ErhI CCWWGG 3 cut(s) 638, 765, 811
FalI AAGNNNNNCTT 2 cut(s) 234, 266
FaqI GGGAC 1 cut(s) 226
FauNDI CATATG 2 cut(s) 73, 882
FblI GTMKAC 1 cut(s) 501
Fnu4HI GCNGC 8 cut(s) 5, 63, 179, 401, 594, 597, 798, 989
FokI GGATG 2 cut(s) 275, 541
FriOI GRGCYC 1 cut(s) 843
Fsp4HI GCNGC 8 cut(s) 5, 63, 179, 401, 594, 597, 798, 989
FspBI CTAG 4 cut(s) 8, 992, 999, 1008
GlaI GCGC 3 cut(s) 177, 202, 726
GluI GCNGC 8 cut(s) 5, 63, 179, 401, 594, 597, 798, 989
GsaI CCCAGC 1 cut(s) 708
HaeII RGCGCY 2 cut(s) 179, 204
HaeIII GGCC 3 cut(s) 572, 863, 953
HhaI GCGC 3 cut(s) 178, 203, 727
Hin1I GRCGYC 1 cut(s) 234
Hin6I GCGC 3 cut(s) 176, 201, 725
HinP1I GCGC 3 cut(s) 176, 201, 725
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HinfI GANTC 4 cut(s) 295, 341, 537, 625
HphI GGTGA 3 cut(s) 61, 797, 926
Hpy166II GTNNAC 5 cut(s) 157, 441, 502, 655, 686
Hpy188I TCNGA 3 cut(s) 395, 648, 909
Hpy188III TCNNGA 3 cut(s) 277, 450, 534
Hpy8I GTNNAC 5 cut(s) 157, 441, 502, 655, 686
Hpy99I CGWCG 1 cut(s) 239
HpyAV CCTTC 3 cut(s) 366, 569, 943
HpyCH4III ACNGT 4 cut(s) 23, 430, 524, 774
HpyCH4IV ACGT 2 cut(s) 234, 255
HpyCH4V TGCA 8 cut(s) 241, 350, 368, 385, 436, 670, 755, 868
HpyF10VI GCNNNNNNNGC 9 cut(s) 68, 77, 184, 198, 224, 701, 761, 803, 1004
HpyF3I CTNAG 2 cut(s) 188, 620
HpySE526I ACGT 2 cut(s) 234, 255
Hsp92I GRCGYC 1 cut(s) 234
HspAI GCGC 3 cut(s) 176, 201, 725
KspI CCGCGG 1 cut(s) 219
Kzo9I GATC 3 cut(s) 273, 452, 850
LmnI GCTCC 1 cut(s) 147
Lsp1109I GCAGC 6 cut(s) 49, 165, 387, 580, 583, 809
MaeI CTAG 4 cut(s) 8, 992, 999, 1008
MaeII ACGT 2 cut(s) 234, 255
MaeIII GTNAC 4 cut(s) 17, 408, 518, 550
MalI GATC 3 cut(s) 275, 454, 852
MboI GATC 3 cut(s) 273, 452, 850
MboII GAAGA 4 cut(s) 135, 721, 935, 1023
MflI RGATCY 1 cut(s) 452
MhlI GDGCHC 2 cut(s) 82, 843
MluCI AATT 8 cut(s) 27, 102, 221, 311, 658, 747, 756, 857
MlyI GAGTC 3 cut(s) 350, 531, 634
MmeI TCCRAC 2 cut(s) 924, 945
MseI TTAA 4 cut(s) 252, 300, 750, 1021
MslI CAYNNNNRTG 1 cut(s) 805
MspA1I CMGCKG 1 cut(s) 218
MspR9I CCNGG 1 cut(s) 955
Mva1269I GAATGC 1 cut(s) 402
MvaI CCWGG 1 cut(s) 955
MvnI CGCG 2 cut(s) 218, 407
MwoI GCNNNNNNNGC 9 cut(s) 68, 77, 184, 198, 224, 701, 761, 803, 1004
NdeI CATATG 2 cut(s) 73, 882
NdeII GATC 3 cut(s) 273, 452, 850
NlaIV GGNNCC 5 cut(s) 214, 379, 454, 636, 933
NspI RCATGY 4 cut(s) 674, 695, 704, 810
PaeI GCATGC 2 cut(s) 704, 810
PctI GAATGC 1 cut(s) 402
PfeI GAWTC 1 cut(s) 295
PkrI GCNGC 8 cut(s) 6, 64, 180, 402, 595, 598, 799, 990
PleI GAGTC 3 cut(s) 349, 531, 633
PpsI GAGTC 3 cut(s) 349, 531, 633
PshBI ATTAAT 1 cut(s) 750
Psp124BI GAGCTC 1 cut(s) 843
Psp1406I AACGTT 1 cut(s) 255
Psp6I CCWGG 1 cut(s) 953
PspFI CCCAGC 1 cut(s) 704
PspGI CCWGG 1 cut(s) 953
PspN4I GGNNCC 5 cut(s) 214, 379, 454, 636, 933
PspPI GGNCC 1 cut(s) 213
PsuI RGATCY 1 cut(s) 452
RsaI GTAC 2 cut(s) 656, 685
RsaNI GTAC 2 cut(s) 655, 684
RseI CAYNNNNRTG 1 cut(s) 805
SacI GAGCTC 1 cut(s) 843
SacII CCGCGG 1 cut(s) 219
SaqAI TTAA 4 cut(s) 252, 300, 750, 1021
SatI GCNGC 8 cut(s) 5, 63, 179, 401, 594, 597, 798, 989
Sau3AI GATC 3 cut(s) 273, 452, 850
Sau96I GGNCC 1 cut(s) 213
SchI GAGTC 3 cut(s) 350, 531, 634
ScrFI CCNGG 1 cut(s) 955
SduI GDGCHC 2 cut(s) 82, 843
SfcI CTRYAG 1 cut(s) 613
Sfr303I CCGCGG 1 cut(s) 219
SgrBI CCGCGG 1 cut(s) 219
SinI GGWCC 1 cut(s) 213
SmiMI CAYNNNNRTG 1 cut(s) 805
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
SphI GCATGC 2 cut(s) 704, 810
Sse9I AATT 8 cut(s) 27, 102, 221, 311, 658, 747, 756, 857
SsiI CCGC 7 cut(s) 65, 160, 216, 218, 353, 989, 1017
SspMI CTAG 4 cut(s) 8, 992, 999, 1008
SstI GAGCTC 1 cut(s) 843
StyD4I CCNGG 1 cut(s) 953
StyI CCWWGG 3 cut(s) 638, 765, 811
TaaI ACNGT 4 cut(s) 23, 430, 524, 774
TaiI ACGT 2 cut(s) 237, 258
TaqI TCGA 3 cut(s) 276, 293, 680
TasI AATT 8 cut(s) 27, 102, 221, 311, 658, 747, 756, 857
TatI WGTACW 2 cut(s) 654, 683
TauI GCSGC 1 cut(s) 991
TfiI GAWTC 1 cut(s) 295
Tru1I TTAA 4 cut(s) 252, 300, 750, 1021
Tru9I TTAA 4 cut(s) 252, 300, 750, 1021
TscAI CASTG 2 cut(s) 448, 841
TseI GCWGC 7 cut(s) 4, 62, 178, 400, 593, 596, 797
TspDTI ATGAA 4 cut(s) 154, 600, 749, 759
TspRI CASTG 2 cut(s) 448, 841
VpaK11BI GGWCC 1 cut(s) 213
VspI ATTAAT 1 cut(s) 750
XceI RCATGY 4 cut(s) 674, 695, 704, 810
XcmI CCANNNNNNNNNTGG 2 cut(s) 140, 961
XmiI GTMKAC 1 cut(s) 501
XspI CTAG 4 cut(s) 8, 992, 999, 1008
ZraI GACGTC 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.