Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001771

Physical Location & Seq

Genomic Coordinates Forward (+)

8065480 .. 8065791

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG076300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGACTGATGCTATGTGTAGGGAAAGAGACACCAAGATGGAAATATCTCCGATTCATGGACAAGCCATATACCAGTCATATTCTTTAAAAATCAGGGAGGCTTGCCAGACCTTAGATCCCTTGGTGCCCTCACTTACTTCATCTGTGAAGGGGCTCTATTCTATGTTGCCCAGGCTTGCACGAACTGCAAGTCTCCATGCTGGGAATCTTCATAAATTATATAGTCACAGTCTTCTCATAAATTATATATTGATATCAGGTAGAATAGCATGTTTAGCTAAAAACAAACTCTTTCTCTTTTATCTCTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000184 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006401 GO:0006402 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019219 GO:0019222 GO:0019439 GO:0019538 GO:0019637 GO:0030258 GO:0031323 GO:0031974 GO:0031981 GO:0032204 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034655 GO:0036211 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046486 GO:0046488 GO:0046700 GO:0046777 GO:0046834 GO:0046854 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140096 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901575 GO:2001020

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

FATC PI3_PI4_kinase SMG1 WD40

Protein Analysis

103

Amino Acids

11.63

Weight (kDa)

9.47

Isoelectric Point (pI)

42.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001771)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0124271 RchiOBHm_Chr6g0259991 RchiOBHm_Chr6g0260001 RchiOBHm_Chr6g0260221 RchiOBHm_Chr6g0260231 RchiOBHm_Chr6g0260571 RchiOBHm_Chr6g0260691 RchiOBHm_Chr6g0260701 RchiOBHm_Chr6g0260711 RchiOBHm_Chr6g0260721
rosa_laevigata	RLG00000014488
rosa_multiflora	Rmu_co8412781.1_g000001 Rmu_sc0000588.1_g000003 Rmu_sc0002968.1_g000004 Rmu_sc0004865.1_g000013 Rmu_sc0004865.1_g000014 Rmu_sc0036322.1_g000001 Rmu_sc0036891.1_g000002
rosa_roxburghii	Rroxscaffold_2G00119970 Rroxscaffold_2G00119990 Rroxscaffold_7G00207330 Rroxscaffold_7G00207340
rosa_samantha	Rh6AG087600 Rh6AG087700 Rh6AG108700 Rh6AG109000 Rh6AG109200 Rh6AG109600 Rh6AG110100 Rh6AG110300 Rh6AG110400 Rh6AG111300 Rh6AG111400 Rh6AG111500 Rh6AG111600 Rh6BG105100 Rh6BG105200 Rh6CG076300 Rh6CG076400 Rh6CG098000 Rh6CG098700 Rh6CG100500 Rh6CG101500 Rh6CG101600 Rh6DG093400 Rh6DG093500
rosa_wichuraiana	Rw6G009400 Rw6G009470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	124
AclWI	GGATC	1 cut(s)	110
AfiI	CCNNNNNNNGG	1 cut(s)	56
AjnI	CCWGG	1 cut(s)	170
AluBI	AGCT	1 cut(s)	278
AluI	AGCT	1 cut(s)	278
Alw26I	GTCTC	2 cut(s)	21, 197
AlwI	GGATC	1 cut(s)	110
ArsI	GACNNNNNNTTYG	2 cut(s)	175, 207
BaeGI	GKGCMC	1 cut(s)	129
BanI	GGYRCC	1 cut(s)	124
BanII	GRGCYC	1 cut(s)	156
BbsI	GAAGAC	1 cut(s)	224
BccI	CCATC	1 cut(s)	31
BciT130I	CCWGG	1 cut(s)	172
BcoDI	GTCTC	2 cut(s)	21, 197
Bme1390I	CCNGG	1 cut(s)	172
BmiI	GGNNCC	1 cut(s)	126
BmrFI	CCNGG	1 cut(s)	172
BpiI	GAAGAC	1 cut(s)	224
BsaJI	CCNNGG	2 cut(s)	120, 170
Bsc4I	CCNNNNNNNGG	1 cut(s)	56
Bse1I	ACTGG	1 cut(s)	73
BseBI	CCWGG	1 cut(s)	172
BseDI	CCNNGG	2 cut(s)	120, 170
BseLI	CCNNNNNNNGG	1 cut(s)	56
BseNI	ACTGG	1 cut(s)	73
BseSI	GKGCMC	1 cut(s)	129
BseYI	CCCAGC	1 cut(s)	200
BshNI	GGYRCC	1 cut(s)	124
BslI	CCNNNNNNNGG	1 cut(s)	56
BsmAI	GTCTC	2 cut(s)	21, 197
Bsp1286I	GDGCHC	2 cut(s)	129, 156
Bsp143I	GATC	1 cut(s)	115
BspLI	GGNNCC	1 cut(s)	126
BspPI	GGATC	1 cut(s)	110
BspT107I	GGYRCC	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	73
BssECI	CCNNGG	2 cut(s)	120, 170
BssMI	GATC	1 cut(s)	115
BssT1I	CCWWGG	1 cut(s)	120
Bst2UI	CCWGG	1 cut(s)	172
Bst4CI	ACNGT	1 cut(s)	230
BstAPI	GCANNNNNTGC	1 cut(s)	185
BstC8I	GCNNGC	2 cut(s)	103, 177
BstDEI	CTNAG	1 cut(s)	112
BstKTI	GATC	1 cut(s)	118
BstMAI	GTCTC	2 cut(s)	21, 197
BstMBI	GATC	1 cut(s)	115
BstMWI	GCNNNNNNNGC	2 cut(s)	185, 275
BstNI	CCWGG	1 cut(s)	172
BstNSI	RCATGY	1 cut(s)	273
BstSCI	CCNGG	1 cut(s)	170
BstSLI	GKGCMC	1 cut(s)	129
BstV2I	GAAGAC	1 cut(s)	224
BstX2I	RGATCY	1 cut(s)	115
BstYI	RGATCY	1 cut(s)	115
Cac8I	GCNNGC	2 cut(s)	103, 177
CviAII	CATG	3 cut(s)	56, 197, 270
CviJI	RGCY	5 cut(s)	65, 101, 154, 175, 278
CviKI_1	RGCY	5 cut(s)	65, 101, 154, 175, 278
DdeI	CTNAG	1 cut(s)	112
DpnI	GATC	1 cut(s)	117
DpnII	GATC	1 cut(s)	115
DraI	TTTAAA	1 cut(s)	87
Eco130I	CCWWGG	1 cut(s)	120
Eco24I	GRGCYC	1 cut(s)	156
Eco32I	GATATC	1 cut(s)	255
EcoRII	CCWGG	1 cut(s)	170
EcoRV	GATATC	1 cut(s)	255
EcoT14I	CCWWGG	1 cut(s)	120
EcoT38I	GRGCYC	1 cut(s)	156
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	3 cut(s)	59, 200, 273
FatI	CATG	3 cut(s)	55, 196, 269
FriOI	GRGCYC	1 cut(s)	156
GsaI	CCCAGC	1 cut(s)	204
Hin1II	CATG	3 cut(s)	59, 200, 273
HinfI	GANTC	2 cut(s)	52, 205
Hpy188I	TCNGA	1 cut(s)	51
HpyAV	CCTTC	1 cut(s)	142
HpyCH4III	ACNGT	1 cut(s)	230
HpyCH4V	TGCA	2 cut(s)	179, 188
HpyF10VI	GCNNNNNNNGC	2 cut(s)	185, 275
HpyF3I	CTNAG	1 cut(s)	112
Hsp92II	CATG	3 cut(s)	59, 200, 273
Kzo9I	GATC	1 cut(s)	115
LpnPI	CCDG	7 cut(s)	79, 86, 119, 157, 184, 186, 243
MaeIII	GTNAC	1 cut(s)	224
MalI	GATC	1 cut(s)	117
MboI	GATC	1 cut(s)	115
MboII	GAAGA	2 cut(s)	200, 224
MflI	RGATCY	1 cut(s)	115
MhlI	GDGCHC	2 cut(s)	129, 156
MluCI	AATT	2 cut(s)	215, 241
MnlI	CCTC	2 cut(s)	91, 139
MseI	TTAA	1 cut(s)	86
MslI	CAYNNNNRTG	1 cut(s)	35
MspR9I	CCNGG	1 cut(s)	172
MvaI	CCWGG	1 cut(s)	172
MwoI	GCNNNNNNNGC	2 cut(s)	185, 275
NdeII	GATC	1 cut(s)	115
NlaIII	CATG	3 cut(s)	59, 200, 273
NlaIV	GGNNCC	1 cut(s)	126
NmuCI	GTSAC	1 cut(s)	224
NspI	RCATGY	1 cut(s)	273
PfeI	GAWTC	2 cut(s)	52, 205
Psp6I	CCWGG	1 cut(s)	170
PspFI	CCCAGC	1 cut(s)	200
PspGI	CCWGG	1 cut(s)	170
PspN4I	GGNNCC	1 cut(s)	126
PsuI	RGATCY	1 cut(s)	115
RseI	CAYNNNNRTG	1 cut(s)	35
SaqAI	TTAA	1 cut(s)	86
Sau3AI	GATC	1 cut(s)	115
ScrFI	CCNGG	1 cut(s)	172
SduI	GDGCHC	2 cut(s)	129, 156
SetI	ASST	3 cut(s)	113, 262, 280
SmiMI	CAYNNNNRTG	1 cut(s)	35
Sse9I	AATT	2 cut(s)	215, 241
StyD4I	CCNGG	1 cut(s)	170
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	1 cut(s)	230
TasI	AATT	2 cut(s)	215, 241
TfiI	GAWTC	2 cut(s)	52, 205
Tru1I	TTAA	1 cut(s)	86
Tru9I	TTAA	1 cut(s)	86
TseFI	GTSAC	1 cut(s)	224
Tsp45I	GTSAC	1 cut(s)	224
TspDTI	ATGAA	3 cut(s)	44, 129, 200
XceI	RCATGY	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.