Rh6BG105200

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001771
Physical Location & Seq
Forward (+)
16197130 .. 16197885
756 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG105200.1

Sequence Viewer

Length: 756 bp
ATGCTGCTCGCGTTACTTTCTTGCTTTTCAACAGTATTGCAGTCCACTGCTTCTGGGTTGCTGGAAATGAATCTACTTGAACAAATTACTGAACCCCTTAACAGAATTATTCCTCGGTTGTTGGGATGTTTATCTATGGTTGGAAGGAAATTTGGGTGGTTGGAATGGATTGGGGATTCATGGAAGTGTCTGACTCTACTGGCAGAAAATTTTTGTGAAAGATTTTCCACTTTTTATGCACTTGCAGTTGATATTTTATTTCAAAGTTTGGAAGTGGACAATAGTAACCAAGCAGGGGGAACTGGAAGAATTACCTCCTTCCAAGTTCATGGAGTTTTAAAAACTAATCTCCAGTTATTATCTTTGCAGAAGTCTGGGCTTCTCCCAATCTCTGTGCAGAAAATACTGCAATTTGATGCTCCAATCTCTCAGTTGCGTTTGCATCCTAATCACTTGGTAACAGGCAGTTCGGCTGCCACTTATATATTCTTGCTTCAACATGGGAATAATGAAGTGGTTGAACAAGCACTGATTTCATTAACAGAGGAGCTGGAGTTATTAAAAGGGATGCTGGAGAAAGCCCTGGGCCATGACGATGGGGTTCTTGCATGTTCTAAATCATATTCAAAATGTGAATTGTTTGCATTGATTAAATTTGATTTGAAGGTTCTTCTGTCATGTGTTTTCTTCAGTGGGGGTGATAGTTATAGTTTGATTGGCCAACCAGACATTGCAACCCTATATCTTATGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006401 GO:0006402 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019219 GO:0019222 GO:0019439 GO:0019538 GO:0019637 GO:0030258 GO:0031323 GO:0031974 GO:0031981 GO:0032204 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034655 GO:0036211 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046486 GO:0046488 GO:0046700 GO:0046777 GO:0046834 GO:0046854 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140096 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901575 GO:2001020
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
FATC PI3_PI4_kinase SMG1 WD40

Protein Analysis

251

Amino Acids

27.73

Weight (kDa)

5.54

Isoelectric Point (pI)

33.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 11
AcoI YGGCCR 1 cut(s) 718
AcsI RAATTY 3 cut(s) 149, 208, 653
AcuI CTGAAG 1 cut(s) 673
AfiI CCNNNNNNNGG 1 cut(s) 295
AgsI TTSAA 7 cut(s) 30, 80, 263, 497, 521, 627, 664
AjnI CCWGG 1 cut(s) 582
AluBI AGCT 1 cut(s) 550
AluI AGCT 1 cut(s) 550
AoxI GGCC 2 cut(s) 586, 718
ApeKI GCWGC 2 cut(s) 4, 473
ApoI RAATTY 3 cut(s) 149, 208, 653
AspS9I GGNCC 1 cut(s) 586
AsuHPI GGTGA 1 cut(s) 710
BalI TGGCCA 1 cut(s) 720
BbvI GCAGC 1 cut(s) 460
BccI CCATC 1 cut(s) 590
BciT130I CCWGG 1 cut(s) 584
BisI GCNGC 2 cut(s) 5, 474
BlsI GCNGC 2 cut(s) 6, 475
Bme1390I CCNGG 1 cut(s) 584
BmgT120I GGNCC 1 cut(s) 586
BmrFI CCNGG 1 cut(s) 584
BmsI GCATC 3 cut(s) 406, 451, 558
BpmI CTGGAG 3 cut(s) 335, 572, 593
BsaBI GATNNNNATC 1 cut(s) 130
BsaJI CCNNGG 3 cut(s) 113, 582, 583
BsaXI ACNNNNNCTCC 2 cut(s) 539, 569
Bsc4I CCNNNNNNNGG 1 cut(s) 295
Bse1I ACTGG 3 cut(s) 204, 307, 352
Bse3DI GCAATG 1 cut(s) 729
Bse8I GATNNNNATC 1 cut(s) 130
BseBI CCWGG 1 cut(s) 584
BseDI CCNNGG 3 cut(s) 113, 582, 583
BseGI GGATG 3 cut(s) 131, 442, 573
BseJI GATNNNNATC 1 cut(s) 130
BseLI CCNNNNNNNGG 1 cut(s) 295
BseMI GCAATG 1 cut(s) 729
BseMII CTCAG 1 cut(s) 443
BseNI ACTGG 3 cut(s) 204, 307, 352
BseRI GAGGAG 1 cut(s) 560
BseXI GCAGC 1 cut(s) 460
BsgI GTGCAG 1 cut(s) 416
Bsh1236I CGCG 1 cut(s) 11
BshFI GGCC 2 cut(s) 588, 720
BslI CCNNNNNNNGG 1 cut(s) 295
BsnI GGCC 2 cut(s) 588, 720
BspANI GGCC 2 cut(s) 588, 720
BspCNI CTCAG 1 cut(s) 442
BspFNI CGCG 1 cut(s) 11
BsrDI GCAATG 1 cut(s) 729
BsrI ACTGG 3 cut(s) 204, 307, 352
BssECI CCNNGG 3 cut(s) 113, 582, 583
Bst2UI CCWGG 1 cut(s) 584
Bst4CI ACNGT 1 cut(s) 34
BstC8I GCNNGC 1 cut(s) 9
BstDEI CTNAG 1 cut(s) 429
BstF5I GGATG 3 cut(s) 131, 442, 573
BstFNI CGCG 1 cut(s) 11
BstNI CCWGG 1 cut(s) 584
BstNSI RCATGY 1 cut(s) 612
BstSCI CCNGG 1 cut(s) 582
BstUI CGCG 1 cut(s) 11
BstV1I GCAGC 1 cut(s) 460
BstXI CCANNNNNNTGG 2 cut(s) 329, 596
BsuRI GGCC 2 cut(s) 588, 720
BtsCI GGATG 3 cut(s) 131, 442, 573
BtsI GCAGTG 1 cut(s) 45
BtsIMutI CAGTG 3 cut(s) 45, 527, 697
Cac8I GCNNGC 1 cut(s) 9
Cfr13I GGNCC 1 cut(s) 586
CviAII CATG 6 cut(s) 180, 329, 500, 590, 609, 678
CviJI RGCY 6 cut(s) 379, 473, 550, 581, 588, 720
CviKI_1 RGCY 6 cut(s) 379, 473, 550, 581, 588, 720
DdeI CTNAG 1 cut(s) 429
DraI TTTAAA 1 cut(s) 339
EaeI YGGCCR 1 cut(s) 718
Eco57I CTGAAG 1 cut(s) 673
EcoRII CCWGG 1 cut(s) 582
FaeI CATG 6 cut(s) 183, 332, 503, 593, 612, 681
FatI CATG 6 cut(s) 179, 328, 499, 589, 608, 677
Fnu4HI GCNGC 2 cut(s) 5, 474
FokI GGATG 3 cut(s) 138, 429, 580
Fsp4HI GCNGC 2 cut(s) 5, 474
GluI GCNGC 2 cut(s) 5, 474
GsuI CTGGAG 3 cut(s) 335, 572, 593
HaeIII GGCC 2 cut(s) 588, 720
Hin1II CATG 6 cut(s) 183, 332, 503, 593, 612, 681
HinfI GANTC 3 cut(s) 70, 176, 193
HphI GGTGA 1 cut(s) 710
Hpy166II GTNNAC 2 cut(s) 45, 277
Hpy188I TCNGA 1 cut(s) 192
Hpy8I GTNNAC 2 cut(s) 45, 277
HpyAV CCTTC 3 cut(s) 138, 328, 658
HpyCH4III ACNGT 1 cut(s) 34
HpyF3I CTNAG 1 cut(s) 429
Hsp92II CATG 6 cut(s) 183, 332, 503, 593, 612, 681
LmnI GCTCC 2 cut(s) 424, 547
Lsp1109I GCAGC 1 cut(s) 460
LweI GCATC 3 cut(s) 406, 451, 558
MaeIII GTNAC 3 cut(s) 12, 284, 457
MboII GAAGA 3 cut(s) 318, 662, 679
MlsI TGGCCA 1 cut(s) 720
MluCI AATT 8 cut(s) 84, 105, 149, 208, 309, 410, 635, 653
MluNI TGGCCA 1 cut(s) 720
MlyI GAGTC 1 cut(s) 187
MmeI TCCRAC 2 cut(s) 121, 141
MnlI CCTC 4 cut(s) 123, 325, 538, 744
Mox20I TGGCCA 1 cut(s) 720
MscI TGGCCA 1 cut(s) 720
MseI TTAA 5 cut(s) 99, 338, 539, 560, 651
MslI CAYNNNNRTG 2 cut(s) 184, 594
Msp20I TGGCCA 1 cut(s) 720
MspR9I CCNGG 1 cut(s) 584
MvaI CCWGG 1 cut(s) 584
MvnI CGCG 1 cut(s) 11
NlaIII CATG 6 cut(s) 183, 332, 503, 593, 612, 681
NspI RCATGY 1 cut(s) 612
PasI CCCWGGG 1 cut(s) 583
PfeI GAWTC 2 cut(s) 70, 176
PkrI GCNGC 2 cut(s) 6, 475
PleI GAGTC 1 cut(s) 187
PpsI GAGTC 1 cut(s) 187
Psp6I CCWGG 1 cut(s) 582
PspGI CCWGG 1 cut(s) 582
PspPI GGNCC 1 cut(s) 586
RseI CAYNNNNRTG 2 cut(s) 184, 594
SaqAI TTAA 5 cut(s) 99, 338, 539, 560, 651
SatI GCNGC 2 cut(s) 5, 474
Sau96I GGNCC 1 cut(s) 586
SchI GAGTC 1 cut(s) 187
ScrFI CCNGG 1 cut(s) 584
SetI ASST 4 cut(s) 317, 552, 669, 755
SfaNI GCATC 3 cut(s) 406, 451, 558
SmiMI CAYNNNNRTG 2 cut(s) 184, 594
Sse9I AATT 8 cut(s) 84, 105, 149, 208, 309, 410, 635, 653
StyD4I CCNGG 1 cut(s) 582
TaaI ACNGT 1 cut(s) 34
TasI AATT 8 cut(s) 84, 105, 149, 208, 309, 410, 635, 653
TfiI GAWTC 2 cut(s) 70, 176
Tru1I TTAA 5 cut(s) 99, 338, 539, 560, 651
Tru9I TTAA 5 cut(s) 99, 338, 539, 560, 651
TscAI CASTG 3 cut(s) 52, 534, 697
TseI GCWGC 2 cut(s) 4, 473
TspDTI ATGAA 5 cut(s) 83, 168, 317, 525, 525
TspRI CASTG 3 cut(s) 52, 534, 697
XapI RAATTY 3 cut(s) 149, 208, 653
XceI RCATGY 1 cut(s) 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.