Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001771

Physical Location & Seq

Genomic Coordinates Reverse (-)

52081702 .. 52082106

Gene Structure 405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00119990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGAGTCTTCCAGGTAGCTTCAATGATCAAGAAGATATAAAGCAACAGCTTTTGCATGGACCTAGTAGCAAAGATGCTAAAGATTTTCAAAATACCACCCCTTACCCTCAAGATGATAGCCAAGAAATGTTGGATTTTCCGCAAAGATCAAAATATACAAAAGCAGATAACACTCATATTAGTTCTTTCAAGTCAACACCTAGTGACCTAAATGAATATCCACCGGCTCGGCATCCCCAATTGATGAAGGCTGTCGGCGTACGTCCCGATACTTCACATCCTTCAAATGAGAACAGAGAGGTGGTGTTTGGGGGTAAAGATGAAATATCCTCACTGAACAAGGATATAACTAAAGATGAAACTCGTGATGCTACGCATGCTTCTAGTCAAGTGGGGCAGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000184 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006401 GO:0006402 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019219 GO:0019222 GO:0019439 GO:0019538 GO:0019637 GO:0030258 GO:0031323 GO:0031974 GO:0031981 GO:0032204 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034655 GO:0036211 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046486 GO:0046488 GO:0046700 GO:0046777 GO:0046834 GO:0046854 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140096 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901575 GO:2001020

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

FATC PI3_PI4_kinase SMG1 WD40

Protein Analysis

134

Amino Acids

14.92

Weight (kDa)

5.25

Isoelectric Point (pI)

51.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001771)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0124271 RchiOBHm_Chr6g0259991 RchiOBHm_Chr6g0260001 RchiOBHm_Chr6g0260221 RchiOBHm_Chr6g0260231 RchiOBHm_Chr6g0260571 RchiOBHm_Chr6g0260691 RchiOBHm_Chr6g0260701 RchiOBHm_Chr6g0260711 RchiOBHm_Chr6g0260721
rosa_laevigata	RLG00000014488
rosa_multiflora	Rmu_co8412781.1_g000001 Rmu_sc0000588.1_g000003 Rmu_sc0002968.1_g000004 Rmu_sc0004865.1_g000013 Rmu_sc0004865.1_g000014 Rmu_sc0036322.1_g000001 Rmu_sc0036891.1_g000002
rosa_roxburghii	Rroxscaffold_2G00119970 Rroxscaffold_2G00119990 Rroxscaffold_7G00207330 Rroxscaffold_7G00207340
rosa_samantha	Rh6AG087600 Rh6AG087700 Rh6AG108700 Rh6AG109000 Rh6AG109200 Rh6AG109600 Rh6AG110100 Rh6AG110300 Rh6AG110400 Rh6AG111300 Rh6AG111400 Rh6AG111500 Rh6AG111600 Rh6BG105100 Rh6BG105200 Rh6CG076300 Rh6CG076400 Rh6CG098000 Rh6CG098700 Rh6CG100500 Rh6CG101500 Rh6CG101600 Rh6DG093400 Rh6DG093500
rosa_wichuraiana	Rw6G009400 Rw6G009470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	140
AdeI	CACNNNGTG	1 cut(s)	203
AfaI	GTAC	1 cut(s)	261
AgsI	TTSAA	4 cut(s)	22, 89, 190, 285
AjnI	CCWGG	1 cut(s)	10
AluBI	AGCT	2 cut(s)	18, 49
AluI	AGCT	2 cut(s)	18, 49
AspS9I	GGNCC	1 cut(s)	59
AvaII	GGWCC	1 cut(s)	59
BauI	CACGAG	1 cut(s)	363
BciT130I	CCWGG	1 cut(s)	12
BclI	TGATCA	1 cut(s)	25
BfaI	CTAG	3 cut(s)	63, 201, 384
Bme1390I	CCNGG	1 cut(s)	12
Bme18I	GGWCC	1 cut(s)	59
BmgT120I	GGNCC	1 cut(s)	59
BmrFI	CCNGG	1 cut(s)	12
BmsI	GCATC	3 cut(s)	64, 241, 358
BpuEI	CTTGAG	1 cut(s)	93
Bse118I	RCCGGY	1 cut(s)	223
BseBI	CCWGG	1 cut(s)	12
BseGI	GGATG	2 cut(s)	232, 277
BsiSI	CCGG	1 cut(s)	224
BsiWI	CGTACG	1 cut(s)	259
BslFI	GGGAC	1 cut(s)	249
BsmFI	GGGAC	1 cut(s)	249
Bsp143I	GATC	2 cut(s)	25, 146
BspACI	CCGC	1 cut(s)	140
BsrFI	RCCGGY	1 cut(s)	223
BssAI	RCCGGY	1 cut(s)	223
BssMI	GATC	2 cut(s)	25, 146
BssSI	CACGAG	1 cut(s)	363
Bst2BI	CACGAG	1 cut(s)	363
Bst2UI	CCWGG	1 cut(s)	12
BstC8I	GCNNGC	1 cut(s)	378
BstF5I	GGATG	2 cut(s)	232, 277
BstKTI	GATC	2 cut(s)	28, 149
BstMBI	GATC	2 cut(s)	25, 146
BstMWI	GCNNNNNNNGC	1 cut(s)	377
BstNI	CCWGG	1 cut(s)	12
BstNSI	RCATGY	1 cut(s)	380
BstSCI	CCNGG	1 cut(s)	10
BtsCI	GGATG	2 cut(s)	232, 277
BtsIMutI	CAGTG	1 cut(s)	332
Cac8I	GCNNGC	1 cut(s)	378
Cfr10I	RCCGGY	1 cut(s)	223
Cfr13I	GGNCC	1 cut(s)	59
Csp6I	GTAC	1 cut(s)	260
CviAII	CATG	2 cut(s)	56, 377
CviJI	RGCY	5 cut(s)	18, 49, 120, 227, 251
CviKI_1	RGCY	5 cut(s)	18, 49, 120, 227, 251
CviQI	GTAC	1 cut(s)	260
DpnI	GATC	2 cut(s)	27, 148
DpnII	GATC	2 cut(s)	25, 146
DraIII	CACNNNGTG	1 cut(s)	203
Eco47I	GGWCC	1 cut(s)	59
EcoRII	CCWGG	1 cut(s)	10
FaeI	CATG	2 cut(s)	59, 380
FaiI	YATR	6 cut(s)	38, 57, 156, 177, 347, 378
FaqI	GGGAC	1 cut(s)	249
FatI	CATG	2 cut(s)	55, 376
FbaI	TGATCA	1 cut(s)	25
FokI	GGATG	2 cut(s)	219, 264
FspBI	CTAG	3 cut(s)	63, 201, 384
HapII	CCGG	1 cut(s)	224
Hin1II	CATG	2 cut(s)	59, 380
HincII	GTYRAC	1 cut(s)	195
HindII	GTYRAC	1 cut(s)	195
HinfI	GANTC	1 cut(s)	4
HpaII	CCGG	1 cut(s)	224
Hpy166II	GTNNAC	1 cut(s)	195
Hpy188III	TCNNGA	4 cut(s)	29, 110, 266, 365
Hpy8I	GTNNAC	1 cut(s)	195
HpyAV	CCTTC	2 cut(s)	241, 291
HpyCH4IV	ACGT	1 cut(s)	262
HpyCH4V	TGCA	1 cut(s)	55
HpyF10VI	GCNNNNNNNGC	1 cut(s)	377
HpySE526I	ACGT	1 cut(s)	262
Hsp92II	CATG	2 cut(s)	59, 380
Ksp22I	TGATCA	1 cut(s)	25
Kzo9I	GATC	2 cut(s)	25, 146
LpnPI	CCDG	3 cut(s)	24, 237, 383
LweI	GCATC	3 cut(s)	64, 241, 358
MaeI	CTAG	3 cut(s)	63, 201, 384
MaeII	ACGT	1 cut(s)	262
MaeIII	GTNAC	1 cut(s)	203
MalI	GATC	2 cut(s)	27, 148
MboI	GATC	2 cut(s)	25, 146
MboII	GAAGA	1 cut(s)	44
MfeI	CAATTG	1 cut(s)	239
MluCI	AATT	1 cut(s)	239
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	1 cut(s)	111
MnlI	CCTC	3 cut(s)	117, 292, 340
MspI	CCGG	1 cut(s)	224
MspR9I	CCNGG	1 cut(s)	12
MunI	CAATTG	1 cut(s)	239
MvaI	CCWGG	1 cut(s)	12
MwoI	GCNNNNNNNGC	1 cut(s)	377
NdeII	GATC	2 cut(s)	25, 146
NlaIII	CATG	2 cut(s)	59, 380
NmeAIII	GCCGAG	1 cut(s)	208
NmuCI	GTSAC	1 cut(s)	203
NspI	RCATGY	1 cut(s)	380
PaeI	GCATGC	1 cut(s)	380
Pfl23II	CGTACG	1 cut(s)	259
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	10
PspGI	CCWGG	1 cut(s)	10
PspLI	CGTACG	1 cut(s)	259
PspPI	GGNCC	1 cut(s)	59
RsaI	GTAC	1 cut(s)	261
RsaNI	GTAC	1 cut(s)	260
Sau3AI	GATC	2 cut(s)	25, 146
Sau96I	GGNCC	1 cut(s)	59
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	12
SetI	ASST	8 cut(s)	16, 20, 51, 64, 202, 210, 265, 303
SfaNI	GCATC	3 cut(s)	64, 241, 358
SinI	GGWCC	1 cut(s)	59
SmlI	CTYRAG	1 cut(s)	108
SmoI	CTYRAG	1 cut(s)	108
SphI	GCATGC	1 cut(s)	380
Sse9I	AATT	1 cut(s)	239
SsiI	CCGC	1 cut(s)	140
SspMI	CTAG	3 cut(s)	63, 201, 384
StyD4I	CCNGG	1 cut(s)	10
TaiI	ACGT	1 cut(s)	265
TasI	AATT	1 cut(s)	239
TscAI	CASTG	1 cut(s)	339
TseFI	GTSAC	1 cut(s)	203
Tsp45I	GTSAC	1 cut(s)	203
TspDTI	ATGAA	4 cut(s)	228, 260, 336, 372
TspRI	CASTG	1 cut(s)	339
VpaK11BI	GGWCC	1 cut(s)	59
XceI	RCATGY	1 cut(s)	380
XspI	CTAG	3 cut(s)	63, 201, 384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.