Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8412781.1

Orthogroup ID

OG0001771

Physical Location & Seq

Genomic Coordinates Forward (+)

195 .. 533

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8412781.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

atgttggattctccgcacatatcaaaatttacagacgcagataacactcatgttggttctttcaagttagcacctagtgacctaaatgaatatcaactggctccagcatcaccaagtgctgaccctgtcagtgtccgtcctgatacttcacgtccttcaaatgagaacagagaggtggtgtttgggggtaaagatgaaatatcctcactgaacaagattataattaaggatgaaacttgtgatgctacacatgcttctagtcgagttggcaggggtaagcatgctgatcccataaaatcttttacctgcactttgtatgttttttccatttctccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000184 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006401 GO:0006402 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019219 GO:0019222 GO:0019439 GO:0019538 GO:0019637 GO:0030258 GO:0031323 GO:0031974 GO:0031981 GO:0032204 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034655 GO:0036211 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046486 GO:0046488 GO:0046700 GO:0046777 GO:0046834 GO:0046854 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140096 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901575 GO:2001020

KEGG Pathways

Metabolic & Signaling

ko03015 map03015

Pfam Domains

Protein Families

FATC PI3_PI4_kinase SMG1 WD40

Protein Analysis

112

Amino Acids

12.13

Weight (kDa)

5.72

Isoelectric Point (pI)

46.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001771)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0124271 RchiOBHm_Chr6g0259991 RchiOBHm_Chr6g0260001 RchiOBHm_Chr6g0260221 RchiOBHm_Chr6g0260231 RchiOBHm_Chr6g0260571 RchiOBHm_Chr6g0260691 RchiOBHm_Chr6g0260701 RchiOBHm_Chr6g0260711 RchiOBHm_Chr6g0260721
rosa_laevigata	RLG00000014488
rosa_multiflora	Rmu_co8412781.1_g000001 Rmu_sc0000588.1_g000003 Rmu_sc0002968.1_g000004 Rmu_sc0004865.1_g000013 Rmu_sc0004865.1_g000014 Rmu_sc0036322.1_g000001 Rmu_sc0036891.1_g000002
rosa_roxburghii	Rroxscaffold_2G00119970 Rroxscaffold_2G00119990 Rroxscaffold_7G00207330 Rroxscaffold_7G00207340
rosa_samantha	Rh6AG087600 Rh6AG087700 Rh6AG108700 Rh6AG109000 Rh6AG109200 Rh6AG109600 Rh6AG110100 Rh6AG110300 Rh6AG110400 Rh6AG111300 Rh6AG111400 Rh6AG111500 Rh6AG111600 Rh6BG105100 Rh6BG105200 Rh6CG076300 Rh6CG076400 Rh6CG098000 Rh6CG098700 Rh6CG100500 Rh6CG101500 Rh6CG101600 Rh6DG093400 Rh6DG093500
rosa_wichuraiana	Rw6G009400 Rw6G009470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	221
Acc36I	ACCTGC	1 cut(s)	314
AciI	CCGC	1 cut(s)	14
AclWI	GGATC	1 cut(s)	281
AcsI	RAATTY	1 cut(s)	26
AdeI	CACNNNGTG	2 cut(s)	77, 116
AgsI	TTSAA	2 cut(s)	64, 159
AjiI	CACGTC	1 cut(s)	152
AlwI	GGATC	1 cut(s)	281
ApoI	RAATTY	1 cut(s)	26
AsuHPI	GGTGA	1 cut(s)	102
BfaI	CTAG	2 cut(s)	75, 258
BfuAI	ACCTGC	1 cut(s)	314
BmgBI	CACGTC	1 cut(s)	152
BmiI	GGNNCC	1 cut(s)	102
BmsI	GCATC	2 cut(s)	116, 232
BpmI	CTGGAG	1 cut(s)	87
Bse1I	ACTGG	1 cut(s)	102
BseGI	GGATG	1 cut(s)	235
BseNI	ACTGG	1 cut(s)	102
BsgI	GTGCAG	1 cut(s)	292
Bsp143I	GATC	1 cut(s)	286
BspACI	CCGC	1 cut(s)	14
BspLI	GGNNCC	1 cut(s)	102
BspMI	ACCTGC	1 cut(s)	314
BspPI	GGATC	1 cut(s)	281
BsrI	ACTGG	1 cut(s)	102
BssMI	GATC	1 cut(s)	286
BstC8I	GCNNGC	1 cut(s)	282
BstDEI	CTNAG	1 cut(s)	336
BstF5I	GGATG	1 cut(s)	235
BstKTI	GATC	1 cut(s)	289
BstMBI	GATC	1 cut(s)	286
BstMWI	GCNNNNNNNGC	1 cut(s)	251
BstNSI	RCATGY	2 cut(s)	254, 284
BtrI	CACGTC	1 cut(s)	152
BtsCI	GGATG	1 cut(s)	235
BtsIMutI	CAGTG	2 cut(s)	136, 206
BveI	ACCTGC	1 cut(s)	314
Cac8I	GCNNGC	1 cut(s)	282
CseI	GACGC	1 cut(s)	44
CviAII	CATG	3 cut(s)	50, 251, 281
CviJI	RGCY	1 cut(s)	101
CviKI_1	RGCY	1 cut(s)	101
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	1 cut(s)	288
DpnII	GATC	1 cut(s)	286
DraIII	CACNNNGTG	2 cut(s)	77, 116
FaeI	CATG	3 cut(s)	53, 254, 284
FaiI	YATR	7 cut(s)	20, 51, 221, 252, 282, 293, 318
FatI	CATG	3 cut(s)	49, 250, 280
FokI	GGATG	1 cut(s)	242
FspBI	CTAG	2 cut(s)	75, 258
GsuI	CTGGAG	1 cut(s)	87
HgaI	GACGC	1 cut(s)	44
Hin1II	CATG	3 cut(s)	53, 254, 284
HinfI	GANTC	1 cut(s)	8
HphI	GGTGA	1 cut(s)	102
Hpy188III	TCNNGA	1 cut(s)	140
HpyAV	CCTTC	1 cut(s)	165
HpyCH4IV	ACGT	1 cut(s)	151
HpyCH4V	TGCA	1 cut(s)	309
HpyF10VI	GCNNNNNNNGC	1 cut(s)	251
HpyF3I	CTNAG	1 cut(s)	336
HpySE526I	ACGT	1 cut(s)	151
Hsp92II	CATG	3 cut(s)	53, 254, 284
Kzo9I	GATC	1 cut(s)	286
LmnI	GCTCC	1 cut(s)	106
LpnPI	CCDG	6 cut(s)	83, 117, 138, 153, 256, 319
LweI	GCATC	2 cut(s)	116, 232
MaeI	CTAG	2 cut(s)	75, 258
MaeII	ACGT	1 cut(s)	151
MaeIII	GTNAC	1 cut(s)	77
MalI	GATC	1 cut(s)	288
MboI	GATC	1 cut(s)	286
MluCI	AATT	2 cut(s)	26, 222
MnlI	CCTC	2 cut(s)	166, 214
MseI	TTAA	1 cut(s)	225
MwoI	GCNNNNNNNGC	1 cut(s)	251
NdeII	GATC	1 cut(s)	286
NlaIII	CATG	3 cut(s)	53, 254, 284
NlaIV	GGNNCC	1 cut(s)	102
NmuCI	GTSAC	1 cut(s)	77
NspI	RCATGY	2 cut(s)	254, 284
PaeI	GCATGC	1 cut(s)	284
PfeI	GAWTC	1 cut(s)	8
PflFI	GACNNNGTC	1 cut(s)	125
PsiI	TTATAA	1 cut(s)	221
PspN4I	GGNNCC	1 cut(s)	102
PsyI	GACNNNGTC	1 cut(s)	125
SaqAI	TTAA	1 cut(s)	225
Sau3AI	GATC	1 cut(s)	286
SetI	ASST	5 cut(s)	76, 84, 154, 177, 308
SfaNI	GCATC	2 cut(s)	116, 232
SphI	GCATGC	1 cut(s)	284
Sse9I	AATT	2 cut(s)	26, 222
SsiI	CCGC	1 cut(s)	14
SspMI	CTAG	2 cut(s)	75, 258
TaiI	ACGT	1 cut(s)	154
TaqI	TCGA	1 cut(s)	262
TasI	AATT	2 cut(s)	26, 222
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	2 cut(s)	136, 213
TseFI	GTSAC	1 cut(s)	77
Tsp45I	GTSAC	1 cut(s)	77
TspDTI	ATGAA	3 cut(s)	102, 210, 246
TspGWI	ACGGA	1 cut(s)	125
TspRI	CASTG	2 cut(s)	136, 213
Tth111I	GACNNNGTC	1 cut(s)	125
XapI	RAATTY	1 cut(s)	26
XceI	RCATGY	2 cut(s)	254, 284
XspI	CTAG	2 cut(s)	75, 258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.