Rh6CG098000

Serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001771
Physical Location & Seq
Forward (+)
10829888 .. 10836756
6869 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG098000.1

Sequence Viewer

Length: 993 bp
ATGCTTGGGAGCTTGGTTGACCGCTTCATTGGTTGGGCACTGCCGTTGCTTAGTAATATCAGCGCCGGAGGTGGGACCGCAGAATTGGCATTGGACGGCCTGCGAGAGTTTCTTAACGTTGGGGATGTTGGCGAGATCAAGAGATATGCTTTGTCGATTCTTAAAGCGTGCCAAGTTCTTCTTGAGGATGAGAGAACCTGCTTGAGTCTGTTGCACCACCTTCTCGGTGTTTTGACTTTGATTTCGTTGAAGTTTTCTAGATACTTCCAACCTCATTTTCTTGACATTGTTGATCTGCTTCTCGGTTGGGCGTTGGTACCGGACCTTGCTGAATCGGATAGAAGAATTATAGTGGATAGTTTCTTACAGTTTCAGAATCATTGGGTGGGTAGTTTGCAGTTTTCTCTGGGATTGCTGTCAAAGTTTGTAGGCGACATGGATGTTTTGATTCAGGATGTAAGTCATGGAACCCCACAACACTTCCGAAGGTTGCTTGCGTTACTATCATGCTTTTCAACAGTATTGCAGTCCACTGCTTCTGGACCCATTCTTTCCCTCCTCCACCTATCCCCGTTCTTTCCCTTTCTTGTAGAGGAAAACCAGTCCAGTAACAGTAGGATGTCTGGACTCATTACATGGGTTACTGGGCTTGTGTATCAGGCAGAAGGTAAATATGAAAAGGCTGCTGCTCACTTTACTTGCTACAGATTGAGGAGTCACTGGGTTCCTTGGGTTCTGATGCATGGCACAATCCTCATCACTAGCAGAAAGTCAACATTCTCAAGACCTGATGATGACCAGCATGATATAGTTGACTCGTTAACAAAAGTAGCAGTGGGCTTGCACTTGATCCCAAATTGGCCTTGCAAAGAAGTGAGCAGATGCTCTTACAGGCAATGCTTTTTCATAATGGTGAAAAGGAAGATAAGGTGCCACATGAGTTGGAGAAGACCAGGTCAATGCTGGAGGAAACATTGTCTGTTCTACCGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006139 GO:0006259 GO:0006281 GO:0006401 GO:0006402 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009892 GO:0009987 GO:0010468 GO:0010605 GO:0010629 GO:0016070 GO:0016071 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019219 GO:0019222 GO:0019439 GO:0019538 GO:0019637 GO:0030258 GO:0031323 GO:0031974 GO:0031981 GO:0032204 GO:0033043 GO:0033044 GO:0033554 GO:0034641 GO:0034655 GO:0036211 GO:0042162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044255 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046486 GO:0046488 GO:0046700 GO:0046777 GO:0046834 GO:0046854 GO:0048519 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051716 GO:0060255 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0097159 GO:0140096 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901575 GO:2001020
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
FATC PI3_PI4_kinase SMG1 WD40

Protein Analysis

330

Amino Acids

37.6

Weight (kDa)

8.8

Isoelectric Point (pI)

40.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 206
Acc65I GGTACC 1 cut(s) 316
AccB1I GGYRCC 2 cut(s) 316, 930
AciI CCGC 3 cut(s) 22, 78, 988
AclI AACGTT 1 cut(s) 117
AclWI GGATC 1 cut(s) 844
AfaI GTAC 1 cut(s) 318
AfiI CCNNNNNNNGG 1 cut(s) 72
AgsI TTSAA 2 cut(s) 250, 516
AjnI CCWGG 1 cut(s) 952
AjuI GAANNNNNNNTTGG 2 cut(s) 261, 293
AluBI AGCT 1 cut(s) 12
AluI AGCT 1 cut(s) 12
AlwI GGATC 1 cut(s) 844
AoxI GGCC 2 cut(s) 97, 860
ApeKI GCWGC 2 cut(s) 683, 686
ArsI GACNNNNNNTTYG 2 cut(s) 226, 258
Asp718I GGTACC 1 cut(s) 316
AspLEI GCGC 1 cut(s) 65
AspS9I GGNCC 3 cut(s) 75, 322, 542
AsuHPI GGTGA 1 cut(s) 925
AvaII GGWCC 3 cut(s) 75, 322, 542
BaeGI GKGCMC 1 cut(s) 40
BanI GGYRCC 2 cut(s) 316, 930
BbsI GAAGAC 1 cut(s) 955
BbvI GCAGC 2 cut(s) 670, 673
BceAI ACGGC 2 cut(s) 28, 112
BciT130I CCWGG 1 cut(s) 954
BfaI CTAG 3 cut(s) 258, 762, 991
BfmI CTRYAG 1 cut(s) 703
BfoI RGCGCY 1 cut(s) 66
BfuAI ACCTGC 1 cut(s) 206
BisI GCNGC 2 cut(s) 684, 687
BlsI GCNGC 2 cut(s) 685, 688
Bme1390I CCNGG 1 cut(s) 954
Bme18I GGWCC 3 cut(s) 75, 322, 542
BmgT120I GGNCC 3 cut(s) 75, 322, 542
BmiI GGNNCC 6 cut(s) 76, 318, 469, 544, 726, 932
BmrFI CCNGG 1 cut(s) 954
BmrI ACTGGG 2 cut(s) 654, 730
BmsI GCATC 2 cut(s) 729, 872
BmuI ACTGGG 2 cut(s) 654, 730
BpiI GAAGAC 1 cut(s) 955
BpmI CTGGAG 1 cut(s) 985
BpuEI CTTGAG 3 cut(s) 203, 223, 766
BsaJI CCNNGG 1 cut(s) 728
BsaWI WCCGGW 1 cut(s) 319
Bsc4I CCNNNNNNNGG 1 cut(s) 72
Bse1I ACTGG 4 cut(s) 601, 606, 649, 725
Bse3DI GCAATG 1 cut(s) 902
BseBI CCWGG 1 cut(s) 954
BseDI CCNNGG 1 cut(s) 728
BseGI GGATG 5 cut(s) 130, 193, 445, 460, 624
BseLI CCNNNNNNNGG 1 cut(s) 72
BseMI GCAATG 1 cut(s) 902
BseNI ACTGG 4 cut(s) 601, 606, 649, 725
BseRI GAGGAG 2 cut(s) 548, 727
BseSI GKGCMC 1 cut(s) 40
BseXI GCAGC 2 cut(s) 670, 673
BshFI GGCC 2 cut(s) 99, 862
BshNI GGYRCC 2 cut(s) 316, 930
BsiSI CCGG 2 cut(s) 66, 320
BslFI GGGAC 1 cut(s) 88
BslI CCNNNNNNNGG 1 cut(s) 72
BsmFI GGGAC 1 cut(s) 88
BsnI GGCC 2 cut(s) 99, 862
Bsp1286I GDGCHC 1 cut(s) 40
Bsp143I GATC 3 cut(s) 135, 292, 849
BspACI CCGC 3 cut(s) 22, 78, 988
BspANI GGCC 2 cut(s) 99, 862
BspLI GGNNCC 6 cut(s) 76, 318, 469, 544, 726, 932
BspMI ACCTGC 1 cut(s) 206
BspPI GGATC 1 cut(s) 844
BspT107I GGYRCC 2 cut(s) 316, 930
BsrDI GCAATG 1 cut(s) 902
BsrI ACTGG 4 cut(s) 601, 606, 649, 725
BssECI CCNNGG 1 cut(s) 728
BssMI GATC 3 cut(s) 135, 292, 849
BssT1I CCWWGG 1 cut(s) 728
Bst2UI CCWGG 1 cut(s) 954
Bst4CI ACNGT 3 cut(s) 369, 520, 614
BstC8I GCNNGC 4 cut(s) 101, 169, 495, 842
BstDEI CTNAG 1 cut(s) 50
BstF5I GGATG 5 cut(s) 130, 193, 445, 460, 624
BstH2I RGCGCY 1 cut(s) 66
BstHHI GCGC 1 cut(s) 65
BstKTI GATC 3 cut(s) 138, 295, 852
BstMBI GATC 3 cut(s) 135, 292, 849
BstMWI GCNNNNNNNGC 1 cut(s) 86
BstNI CCWGG 1 cut(s) 954
BstSCI CCNGG 1 cut(s) 952
BstSFI CTRYAG 1 cut(s) 703
BstSLI GKGCMC 1 cut(s) 40
BstV1I GCAGC 2 cut(s) 670, 673
BstV2I GAAGAC 1 cut(s) 955
BsuRI GGCC 2 cut(s) 99, 862
BtsCI GGATG 5 cut(s) 130, 193, 445, 460, 624
BtsI GCAGTG 3 cut(s) 38, 531, 840
BtsIMutI CAGTG 4 cut(s) 38, 531, 718, 840
BveI ACCTGC 1 cut(s) 206
Cac8I GCNNGC 4 cut(s) 101, 169, 495, 842
CfoI GCGC 1 cut(s) 65
Cfr13I GGNCC 3 cut(s) 75, 322, 542
CsiI ACCWGGT 1 cut(s) 952
Csp6I GTAC 1 cut(s) 317
CspCI CAANNNNNGTGG 2 cut(s) 923, 958
CviAII CATG 7 cut(s) 436, 464, 507, 636, 743, 803, 937
CviJI RGCY 6 cut(s) 12, 99, 649, 683, 840, 862
CviKI_1 RGCY 6 cut(s) 12, 99, 649, 683, 840, 862
CviQI GTAC 1 cut(s) 317
DdeI CTNAG 1 cut(s) 50
DpnI GATC 3 cut(s) 137, 294, 851
DpnII GATC 3 cut(s) 135, 292, 849
Eco130I CCWWGG 1 cut(s) 728
Eco47I GGWCC 3 cut(s) 75, 322, 542
EcoRII CCWGG 1 cut(s) 952
EcoT14I CCWWGG 1 cut(s) 728
EcoT22I ATGCAT 1 cut(s) 744
ErhI CCWWGG 1 cut(s) 728
FaeI CATG 7 cut(s) 439, 467, 510, 639, 746, 806, 940
FalI AAGNNNNNCTT 2 cut(s) 165, 197
FaqI GGGAC 1 cut(s) 88
FatI CATG 7 cut(s) 435, 463, 506, 635, 742, 802, 936
Fnu4HI GCNGC 2 cut(s) 684, 687
FokI GGATG 5 cut(s) 137, 200, 452, 467, 631
Fsp4HI GCNGC 2 cut(s) 684, 687
FspBI CTAG 3 cut(s) 258, 762, 991
GlaI GCGC 1 cut(s) 64
GluI GCNGC 2 cut(s) 684, 687
GsuI CTGGAG 1 cut(s) 985
HaeII RGCGCY 1 cut(s) 66
HaeIII GGCC 2 cut(s) 99, 862
HapII CCGG 2 cut(s) 66, 320
HhaI GCGC 1 cut(s) 65
Hin1II CATG 7 cut(s) 439, 467, 510, 639, 746, 806, 940
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HincII GTYRAC 4 cut(s) 19, 774, 814, 822
HindII GTYRAC 4 cut(s) 19, 774, 814, 822
HinfI GANTC 8 cut(s) 157, 205, 332, 376, 448, 627, 715, 815
HpaI GTTAAC 1 cut(s) 822
HpaII CCGG 2 cut(s) 66, 320
HphI GGTGA 1 cut(s) 925
Hpy166II GTNNAC 5 cut(s) 19, 531, 774, 814, 822
Hpy188I TCNGA 4 cut(s) 337, 375, 485, 738
Hpy188III TCNNGA 8 cut(s) 139, 182, 258, 281, 452, 540, 624, 783
Hpy8I GTNNAC 5 cut(s) 19, 531, 774, 814, 822
HpyAV CCTTC 3 cut(s) 230, 480, 659
HpyCH4III ACNGT 3 cut(s) 369, 520, 614
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 6 cut(s) 214, 397, 526, 742, 844, 867
HpyF10VI GCNNNNNNNGC 1 cut(s) 86
HpyF3I CTNAG 1 cut(s) 50
HpySE526I ACGT 1 cut(s) 117
Hsp92II CATG 7 cut(s) 439, 467, 510, 639, 746, 806, 940
HspAI GCGC 1 cut(s) 63
KpnI GGTACC 1 cut(s) 320
KspAI GTTAAC 1 cut(s) 822
Kzo9I GATC 3 cut(s) 135, 292, 849
LmnI GCTCC 1 cut(s) 9
Lsp1109I GCAGC 2 cut(s) 670, 673
LweI GCATC 2 cut(s) 729, 872
MabI ACCWGGT 1 cut(s) 952
MaeI CTAG 3 cut(s) 258, 762, 991
MaeII ACGT 1 cut(s) 117
MaeIII GTNAC 4 cut(s) 498, 608, 640, 716
MalI GATC 3 cut(s) 137, 294, 851
MboI GATC 3 cut(s) 135, 292, 849
MboII GAAGA 4 cut(s) 170, 354, 934, 960
MhlI GDGCHC 1 cut(s) 40
MluCI AATT 3 cut(s) 83, 345, 856
MlyI GAGTC 4 cut(s) 214, 621, 724, 809
MmeI TCCRAC 2 cut(s) 292, 923
MnlI CCTC 9 cut(s) 62, 178, 282, 566, 569, 586, 705, 764, 960
Mph1103I ATGCAT 1 cut(s) 744
MseI TTAA 3 cut(s) 114, 162, 821
MslI CAYNNNNRTG 1 cut(s) 911
MspI CCGG 2 cut(s) 66, 320
MspR9I CCNGG 1 cut(s) 954
MvaI CCWGG 1 cut(s) 954
MwoI GCNNNNNNNGC 1 cut(s) 86
NdeII GATC 3 cut(s) 135, 292, 849
NlaIII CATG 7 cut(s) 439, 467, 510, 639, 746, 806, 940
NlaIV GGNNCC 6 cut(s) 76, 318, 469, 544, 726, 932
NmuCI GTSAC 1 cut(s) 716
NsiI ATGCAT 1 cut(s) 744
PfeI GAWTC 4 cut(s) 157, 332, 376, 448
PflFI GACNNNGTC 1 cut(s) 954
PkrI GCNGC 2 cut(s) 685, 688
PleI GAGTC 4 cut(s) 213, 621, 723, 809
PpsI GAGTC 4 cut(s) 213, 621, 723, 809
Psp1406I AACGTT 1 cut(s) 117
Psp6I CCWGG 1 cut(s) 952
PspGI CCWGG 1 cut(s) 952
PspN4I GGNNCC 6 cut(s) 76, 318, 469, 544, 726, 932
PspPI GGNCC 3 cut(s) 75, 322, 542
PsyI GACNNNGTC 1 cut(s) 954
RsaI GTAC 1 cut(s) 318
RsaNI GTAC 1 cut(s) 317
RseI CAYNNNNRTG 1 cut(s) 911
SaqAI TTAA 3 cut(s) 114, 162, 821
SatI GCNGC 2 cut(s) 684, 687
Sau3AI GATC 3 cut(s) 135, 292, 849
Sau96I GGNCC 3 cut(s) 75, 322, 542
SchI GAGTC 4 cut(s) 214, 621, 724, 809
ScrFI CCNGG 1 cut(s) 954
SduI GDGCHC 1 cut(s) 40
SexAI ACCWGGT 1 cut(s) 952
SfaNI GCATC 2 cut(s) 729, 872
SfcI CTRYAG 1 cut(s) 703
SinI GGWCC 3 cut(s) 75, 322, 542
SmiMI CAYNNNNRTG 1 cut(s) 911
SmlI CTYRAG 3 cut(s) 182, 202, 781
SmoI CTYRAG 3 cut(s) 182, 202, 781
Sse9I AATT 3 cut(s) 83, 345, 856
SsiI CCGC 3 cut(s) 22, 78, 988
SspMI CTAG 3 cut(s) 258, 762, 991
StyD4I CCNGG 1 cut(s) 952
StyI CCWWGG 1 cut(s) 728
TaaI ACNGT 3 cut(s) 369, 520, 614
TaiI ACGT 1 cut(s) 120
TaqI TCGA 1 cut(s) 155
TasI AATT 3 cut(s) 83, 345, 856
TfiI GAWTC 4 cut(s) 157, 332, 376, 448
Tru1I TTAA 3 cut(s) 114, 162, 821
Tru9I TTAA 3 cut(s) 114, 162, 821
TscAI CASTG 4 cut(s) 45, 538, 725, 840
TseFI GTSAC 1 cut(s) 716
TseI GCWGC 2 cut(s) 683, 686
Tsp45I GTSAC 1 cut(s) 716
TspDTI ATGAA 3 cut(s) 16, 690, 895
TspRI CASTG 4 cut(s) 45, 538, 725, 840
Tth111I GACNNNGTC 1 cut(s) 954
VpaK11BI GGWCC 3 cut(s) 75, 322, 542
XbaI TCTAGA 1 cut(s) 257
XcmI CCANNNNNNNNNTGG 1 cut(s) 960
XspI CTAG 3 cut(s) 258, 762, 991
Zsp2I ATGCAT 1 cut(s) 744
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.